Year |
Citation |
Score |
2023 |
Li Y, Fan H, Qin W, Wang Y, Chen S, Bao W, Sun MA. Regulation of the three-dimensional chromatin organization by transposable elements in pig spleen. Computational and Structural Biotechnology Journal. 21: 4580-4588. PMID 37790243 DOI: 10.1016/j.csbj.2023.09.029 |
0.421 |
|
2021 |
Sun MA, Wolf G, Wang Y, Senft AD, Ralls S, Jin J, Dunn-Fletcher CE, Muglia LJ, Macfarlan TS. Endogenous retroviruses drive lineage-specific regulatory evolution across primate and rodent placentae. Molecular Biology and Evolution. PMID 34320657 DOI: 10.1093/molbev/msab223 |
0.436 |
|
2020 |
Hui X, Chen Z, Lin M, Zhang J, Hu Y, Zeng Y, Cheng X, Ou-Yang L, Sun MA, White AP, Wang Y. T3SEpp: an Integrated Prediction Pipeline for Bacterial Type III Secreted Effectors. Msystems. 5. PMID 32753503 DOI: 10.1128/mSystems.00288-20 |
0.496 |
|
2020 |
Hu Y, Shu XS, Yu J, Sun MA, Chen Z, Liu X, Fang Q, Zhang W, Hui X, Ying Y, Fu L, Lu D, Kumar R, Wang Y. Improving the diversity of captured full-length isoforms using a normalized single-molecule RNA-sequencing method. Communications Biology. 3: 403. PMID 32732980 DOI: 10.1038/s42003-020-01125-7 |
0.467 |
|
2019 |
Zhang H, Niu Y, Tan J, Liu W, Sun MA, Yang E, Wang Q, Li R, Wang Y, Liu W. Global Screening of Genomic and Transcriptomic Factors Associated with Phenotype Differences between Multidrug-Resistant and -Susceptible Candida haemulonii Strains. Msystems. 4. PMID 31848301 DOI: 10.1128/mSystems.00459-19 |
0.392 |
|
2018 |
Luo Y, He J, Xu X, Sun MA, Wu X, Lu X, Xie H. Integrative single-cell omics analyses reveal epigenetic heterogeneity in mouse embryonic stem cells. Plos Computational Biology. 14: e1006034. PMID 29561833 DOI: 10.1371/Journal.Pcbi.1006034 |
0.327 |
|
2018 |
Shao X, Sun MA. Predicting Gene Expression Noise from Gene Expression Variations. Methods in Molecular Biology (Clifton, N.J.). 1751: 183-198. PMID 29508298 DOI: 10.1007/978-1-4939-7710-9_13 |
0.305 |
|
2018 |
Sun MA, Zhai R, Zhang Q, Wang Y. Identification and Expression Analysis of Long Intergenic Noncoding RNAs. Methods in Molecular Biology (Clifton, N.J.). 1751: 139-152. PMID 29508295 DOI: 10.1007/978-1-4939-7710-9_10 |
0.492 |
|
2018 |
Wang Y, Sun MA, White AP. RNA-Seq-Based Transcript Structure Analysis with TrBorderExt. Methods in Molecular Biology (Clifton, N.J.). 1751: 89-99. PMID 29508291 DOI: 10.1007/978-1-4939-7710-9_6 |
0.505 |
|
2018 |
Huang Q, Sun MA, Yan P. Pathway and Network Analysis of Differentially Expressed Genes in Transcriptomes. Methods in Molecular Biology (Clifton, N.J.). 1751: 35-55. PMID 29508288 DOI: 10.1007/978-1-4939-7710-9_3 |
0.358 |
|
2018 |
Sun MA, Shao X, Wang Y. Microarray Data Analysis for Transcriptome Profiling. Methods in Molecular Biology (Clifton, N.J.). 1751: 17-33. PMID 29508287 DOI: 10.1007/978-1-4939-7710-9_2 |
0.5 |
|
2018 |
Cheng H, Wang Y, Sun MA. Comparison of Gene Expression Profiles in Nonmodel Eukaryotic Organisms with RNA-Seq. Methods in Molecular Biology (Clifton, N.J.). 1751: 3-16. PMID 29508286 DOI: 10.1007/978-1-4939-7710-9_1 |
0.515 |
|
2018 |
Brown JL, Sun MA, Kassis JA. Global changes of H3K27me3 domains and Polycomb group protein distribution in the absence of recruiters Spps or Pho. Proceedings of the National Academy of Sciences of the United States of America. PMID 29432187 DOI: 10.1073/Pnas.1716299115 |
0.36 |
|
2017 |
Fu L, Liu KK, Sun MA, Tian CP, Sun R, Morales Betanzos C, Tallman KA, Porter NA, Yang Y, Guo DJ, Liebler DC, Yang J. Systematic and quantitative assessment of hydrogen peroxide reactivity with cysteines across human proteomes. Molecular & Cellular Proteomics : McP. PMID 28827280 DOI: 10.1074/Mcp.Ra117.000108 |
0.59 |
|
2017 |
Zhang Q, Fan X, Wang Y, Sun M, Shao J, Guo D. BPP: a sequence-based algorithm for branch point prediction. Bioinformatics (Oxford, England). PMID 28633445 DOI: 10.1093/Bioinformatics/Btx401 |
0.64 |
|
2017 |
Hui X, Hu Y, Sun MA, Shu X, Han R, Ge Q, Wang Y. EBT: A Statistic Test Identifying Moderate Size of Significant Features with Balanced Power and Precision for Genome-wide Rate Comparisons. Bioinformatics (Oxford, England). PMID 28472273 DOI: 10.1093/Bioinformatics/Btx294 |
0.474 |
|
2017 |
Sun MA, Wang Y, Zhang Q, Xia Y, Ge W, Guo D. Prediction of reversible disulfide based on features from local structural signatures. Bmc Genomics. 18: 279. PMID 28376774 DOI: 10.1186/S12864-017-3668-8 |
0.62 |
|
2016 |
Sun MA, Zhang Q, Wang Y, Ge W, Guo D. Prediction of redox-sensitive cysteines using sequential distance and other sequence-based features. Bmc Bioinformatics. 17: 316. PMID 27553667 DOI: 10.1186/S12859-016-1185-4 |
0.654 |
|
2016 |
Tran H, Wu X, Tithi S, Sun MA, Xie H, Zhang L. A Bayesian Assignment Method for Ambiguous Bisulfite Short Reads. Plos One. 11: e0151826. PMID 27011215 DOI: 10.1371/Journal.Pone.0151826 |
0.349 |
|
2015 |
Sun MA, Velmurugan KR, Keimig D, Xie H. HBS-Tools for Hairpin Bisulfite Sequencing Data Processing and Analysis. Advances in Bioinformatics. 2015: 760423. PMID 26798339 DOI: 10.1155/2015/760423 |
0.334 |
|
2015 |
He J, Sun MA, Wang Z, Wang Q, Li Q, Xie H. Characterization and machine learning prediction of allele-specific DNA methylation. Genomics. PMID 26407641 DOI: 10.1016/J.Ygeno.2015.09.007 |
0.35 |
|
2015 |
Ma DM, Wang Z, Wang L, Alejos-Gonzales F, Sun MA, Xie DY. A Genome-Wide Scenario of Terpene Pathways in Self-pollinated Artemisia annua. Molecular Plant. PMID 26192869 DOI: 10.1016/J.Molp.2015.07.004 |
0.354 |
|
2013 |
Wang Y, Sun M, Bao H, Zhang Q, Guo D. Effective identification of bacterial type III secretion signals using joint element features. Plos One. 8: e59754. PMID 23593149 DOI: 10.1371/Journal.Pone.0059754 |
0.644 |
|
2013 |
Wang Y, Sun M, Bao H, White AP. T3_MM: a Markov model effectively classifies bacterial type III secretion signals. Plos One. 8: e58173. PMID 23472154 DOI: 10.1371/Journal.Pone.0058173 |
0.481 |
|
2012 |
Sun MA, Wang Y, Cheng H, Zhang Q, Ge W, Guo D. RedoxDB--a curated database for experimentally verified protein oxidative modification. Bioinformatics (Oxford, England). 28: 2551-2. PMID 22833525 DOI: 10.1093/Bioinformatics/Bts468 |
0.654 |
|
2012 |
Zhang Q, Fan X, Wang Y, Sun M, Sun SS, Guo D. A model-based method for gene dependency measurement. Plos One. 7: e40918. PMID 22829898 DOI: 10.1371/Journal.Pone.0040918 |
0.65 |
|
2012 |
Wang Y, Huang H, Sun M, Zhang Q, Guo D. T3DB: an integrated database for bacterial type III secretion system. Bmc Bioinformatics. 13: 66. PMID 22545727 DOI: 10.1186/1471-2105-13-66 |
0.629 |
|
2011 |
Sun M, Shen X, Liu H, Liu X, Wu Z, Liu B. Complete mitochondrial genome of Tubulipora flabellaris (Bryozoa: Stenolaemata): the first representative from the class Stenolaemata with unique gene order. Marine Genomics. 4: 159-65. PMID 21867967 DOI: 10.1016/J.Margen.2011.03.006 |
0.34 |
|
2011 |
Wang Y, Zhang Q, Sun MA, Guo D. High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles. Bioinformatics (Oxford, England). 27: 777-84. PMID 21233168 DOI: 10.1093/Bioinformatics/Btr021 |
0.645 |
|
2011 |
Shen X, Wu Z, Sun M, Ren J, Liu B. The complete mitochondrial genome sequence of Whitmania pigra (Annelida, Hirudinea): the first representative from the class Hirudinea. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 6: 133-8. PMID 21212033 DOI: 10.1016/J.Cbd.2010.12.001 |
0.362 |
|
2009 |
Ren J, Shen X, Sun M, Jiang F, Yu Y, Chi Z, Liu B. The complete mitochondrial genome of the clam Meretrix petechialis (Mollusca: Bivalvia: Veneridae). Mitochondrial Dna. 20: 78-87. PMID 19479624 DOI: 10.1080/19401730902964425 |
0.342 |
|
2009 |
Wu Z, Shen X, Sun M, Ren J, Wang Y, Huang Y, Liu B. Phylogenetic analyses of complete mitochondrial genome of Urechis unicinctus (Echiura) support that echiurans are derived annelids. Molecular Phylogenetics and Evolution. 52: 558-62. PMID 19306935 DOI: 10.1016/J.Ympev.2009.03.009 |
0.469 |
|
2009 |
Sun M, Wu Z, Shen X, Ren J, Liu X, Liu H, Liu B. The complete mitochondrial genome of Watersipora subtorquata (Bryozoa, Gymnolaemata, Ctenostomata) with phylogenetic consideration of Bryozoa. Gene. 439: 17-24. PMID 19289161 DOI: 10.1016/J.Gene.2009.03.003 |
0.352 |
|
2009 |
Shen X, Sun M, Wu Z, Tian M, Cheng H, Zhao F, Meng X. The complete mitochondrial genome of the ridgetail white prawn Exopalaemon carinicauda Holthuis, 1950 (Crustacean: Decapoda: Palaemonidae) revealed a novel rearrangement of tRNA genes. Gene. 437: 1-8. PMID 19268697 DOI: 10.1016/J.Gene.2009.02.014 |
0.368 |
|
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