| Year |
Citation |
Score |
| 2019 |
Frezza E, Courban A, Allouche D, Sargueil B, Pasquali S. The interplay between molecular flexibility and RNA chemical probing reactivities analyzed at the nucleotide level via an extensive molecular dynamics study. Methods (San Diego, Calif.). PMID 31145972 DOI: 10.1016/J.Ymeth.2019.05.021 |
0.334 |
|
| 2019 |
Pasquali S, Frezza E, Silva FLBd. Coarse-grained dynamic RNA titration simulations. Interface Focus. 9: 20180066. PMID 31065339 DOI: 10.1098/Rsfs.2018.0066 |
0.399 |
|
| 2017 |
da Silva FLB, Derreumaux P, Pasquali S. Protein-RNA complexation driven by the charge regulation mechanism. Biochemical and Biophysical Research Communications. PMID 28709871 DOI: 10.1016/J.Bbrc.2017.07.027 |
0.376 |
|
| 2017 |
Mazzanti L, Doutreligne S, Gageat C, Derreumaux P, Taly A, Baaden M, Pasquali S. What Can Human-Guided Simulations Bring to RNA Folding? Biophysical Journal. PMID 28648754 DOI: 10.1016/J.Bpj.2017.05.047 |
0.387 |
|
| 2017 |
Barroso da Silva FL, Derreumaux P, Pasquali S. Fast coarse-grained model for RNA titration. The Journal of Chemical Physics. 146: 035101. PMID 28109220 DOI: 10.1063/1.4972986 |
0.331 |
|
| 2017 |
Martinez-Zapien D, Legrand P, McEwen AG, Proux F, Cragnolini T, Pasquali S, Dock-Bregeon AC. The crystal structure of the 5' functional domain of the transcription riboregulator 7SK. Nucleic Acids Research. PMID 28082395 DOI: 10.1093/Nar/Gkw1351 |
0.367 |
|
| 2016 |
Barroso da Silva FL, Pasquali S, Derreumaux P, Dias LG. Electrostatics analysis of the mutational and pH effects of the N-terminal domain self-association of the major ampullate spidroin. Soft Matter. PMID 27250106 DOI: 10.1039/C6Sm00860G |
0.344 |
|
| 2015 |
Cragnolini T, Laurin Y, Derreumaux P, Pasquali S. Coarse-Grained HiRE-RNA Model for ab Initio RNA Folding beyond Simple Molecules, Including Noncanonical and Multiple Base Pairings. Journal of Chemical Theory and Computation. 11: 3510-22. PMID 26575783 DOI: 10.1021/Acs.Jctc.5B00200 |
0.389 |
|
| 2015 |
Cragnolini T, Derreumaux P, Pasquali S. Ab initio RNA folding. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 27: 233102. PMID 25993396 DOI: 10.1088/0953-8984/27/23/233102 |
0.364 |
|
| 2015 |
Cragnolini T, Doutreligne S, Baaden M, Derreumaux P, Pasquali S. 44 Predicting and exploring complex nucleic acids architectures through a coarse-grained model Journal of Biomolecular Structure and Dynamics. 33: 30-31. DOI: 10.1080/07391102.2015.1032593 |
0.423 |
|
| 2014 |
Sterpone F, Melchionna S, Tuffery P, Pasquali S, Mousseau N, Cragnolini T, Chebaro Y, St-Pierre JF, Kalimeri M, Barducci A, Laurin Y, Tek A, Baaden M, Nguyen PH, Derreumaux P. The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems. Chemical Society Reviews. 43: 4871-93. PMID 24759934 DOI: 10.1039/C4Cs00048J |
0.322 |
|
| 2014 |
Cragnolini T, Laurin Y, Derreumaux P, Pasquali S. Coarse-Grain RNA Folding: Towards More Complex Structures Biophysical Journal. 106: 284a. DOI: 10.1016/J.Bpj.2013.11.1662 |
0.38 |
|
| 2014 |
Cragnolini T, Sutherland-Cash KH, Wales D, Pasquali S, Derreumaux P. Wide Exploration of OPEP Protein Energy Landscapes using Advanced Monte Carlo Methods Biophysical Journal. 106: 256a. DOI: 10.1016/J.Bpj.2013.11.1505 |
0.307 |
|
| 2013 |
Cragnolini T, Derreumaux P, Pasquali S. Coarse-grained simulations of RNA and DNA duplexes. The Journal of Physical Chemistry. B. 117: 8047-60. PMID 23730911 DOI: 10.1021/Jp400786B |
0.358 |
|
| 2012 |
Chebaro Y, Pasquali S, Derreumaux P. The coarse-grained OPEP force field for non-amyloid and amyloid proteins. The Journal of Physical Chemistry. B. 116: 8741-52. PMID 22742737 DOI: 10.1021/Jp301665F |
0.343 |
|
| 2010 |
Pasquali S, Derreumaux P. HiRE-RNA: a high resolution coarse-grained energy model for RNA. The Journal of Physical Chemistry. B. 114: 11957-66. PMID 20795690 DOI: 10.1021/Jp102497Y |
0.347 |
|
| 2009 |
Pasquali S, Maggs AC. Numerical studies of Lifshitz interactions between dielectrics Physical Review a - Atomic, Molecular, and Optical Physics. 79. DOI: 10.1103/Physreva.79.020102 |
0.631 |
|
| 2009 |
Pasquali S, Percus JK. Mean field and the confined single homopolymer Molecular Physics. 107: 1303-1312. DOI: 10.1080/00268970902776740 |
0.549 |
|
| 2008 |
Pasquali S, Maggs AC. Fluctuation-induced interactions between dielectrics in general geometries. The Journal of Chemical Physics. 129: 014703. PMID 18624492 DOI: 10.1063/1.2949508 |
0.633 |
|
| 2008 |
Pasquali S, Nitti F, Maggs AC. Numerical methods for fluctuation-driven interactions between dielectrics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 016705. PMID 18351958 DOI: 10.1103/Physreve.77.016705 |
0.644 |
|
| 2008 |
Pasquali S, Nitti F, Maggs AC. Numerical methods for fluctuation-driven interactions between dielectrics Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 77. DOI: 10.1103/PhysRevE.77.016705 |
0.633 |
|
| 2008 |
Pasquali S, Maggs AC. Fluctuation-induced interactions between dielectrics in general geometries Journal of Chemical Physics. 129. DOI: 10.1063/1.2949508 |
0.603 |
|
| 2006 |
Pasquali S, Percus JK. Mapping a homopolymer onto a model fluid. The Journal of Chemical Physics. 125: 64906. PMID 16942311 DOI: 10.1063/1.2218340 |
0.546 |
|
| 2005 |
Pasquali S, Gan HH, Schlick T. Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs. Nucleic Acids Research. 33: 1384-98. PMID 15745998 DOI: 10.1093/Nar/Gki267 |
0.312 |
|
| 2003 |
Gan HH, Pasquali S, Schlick T. Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design. Nucleic Acids Research. 31: 2926-43. PMID 12771219 DOI: 10.1093/Nar/Gkg365 |
0.307 |
|
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