| Year |
Citation |
Score |
| 2020 |
Nguyen NK, Deehan EC, Zhang Z, Jin M, Baskota N, Perez-Muñoz ME, Cole J, Tuncil YE, Seethaler B, Wang T, Laville M, Delzenne NM, Bischoff SC, Hamaker BR, Martínez I, ... Knights D, et al. Gut microbiota modulation with long-chain corn bran arabinoxylan in adults with overweight and obesity is linked to an individualized temporal increase in fecal propionate. Microbiome. 8: 118. PMID 32814582 DOI: 10.1186/S40168-020-00887-W |
0.306 |
|
| 2020 |
Johnson AJ, Zheng JJ, Kang JW, Saboe A, Knights D, Zivkovic AM. A Guide to Diet-Microbiome Study Design. Frontiers in Nutrition. 7: 79. PMID 32596250 DOI: 10.3389/Fnut.2020.00079 |
0.335 |
|
| 2019 |
Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, Yin JB, Huang S, Salam N, Jiao JY, ... ... Knights D, et al. Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nature Communications. 10: 5477. PMID 31792218 DOI: 10.1038/S41467-019-13443-4 |
0.316 |
|
| 2019 |
Le Bastard Q, Vangay P, Batard E, Knights D, Montassier E. US immigration is associated with rapid and persistent acquisition of antibiotic resistance genes in the gut. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31679002 DOI: 10.1093/Cid/Ciz1087 |
0.31 |
|
| 2019 |
Ward TL, Weber BP, Mendoza KM, Danzeisen JL, Llop K, Lang K, Clayton JB, Grace E, Brannon J, Radovic I, Beauclaire M, Heisel TJ, Knights D, Cardona C, Kogut M, et al. Antibiotics and Host-Tailored Probiotics Similarly Modulate Effects on the Developing Avian Microbiome, Mycobiome, and Host Gene Expression. Mbio. 10. PMID 31615957 DOI: 10.1128/Mbio.02171-19 |
0.369 |
|
| 2019 |
Rashidi A, Ebadi M, Shields-Cutler RR, Kruziki K, Manias DA, Barnes AMT, DeFor TE, Ferrieri P, Young JH, Knights D, Blazar BR, Weisdorf DJ, Dunny GM. Early E. casseliflavus gut colonization and outcomes of allogeneic hematopoietic cell transplantation. Plos One. 14: e0220850. PMID 31393924 DOI: 10.1371/Journal.Pone.0220850 |
0.301 |
|
| 2019 |
Johnson AJ, Vangay P, Al-Ghalith GA, Hillmann BM, Ward TL, Shields-Cutler RR, Kim AD, Shmagel AK, Syed AN, Walter J, Menon R, Koecher K, Knights D. Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans. Cell Host & Microbe. 25: 789-802.e5. PMID 31194939 DOI: 10.1016/J.Chom.2019.05.005 |
0.333 |
|
| 2019 |
Saffouri GB, Shields-Cutler RR, Chen J, Yang Y, Lekatz HR, Hale VL, Cho JM, Battaglioli EJ, Bhattarai Y, Thompson KJ, Kalari KK, Behera G, Berry JC, Peters SA, Patel R, ... ... Knights D, et al. Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders. Nature Communications. 10: 2012. PMID 31043597 DOI: 10.1038/S41467-019-09964-7 |
0.324 |
|
| 2019 |
Clayton JB, Shields-Cutler RR, Hoops SL, Al-Ghalith GA, Sha JCM, Johnson TJ, Knights D. Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus). American Journal of Primatology. e22977. PMID 30997937 DOI: 10.1002/Ajp.22977 |
0.396 |
|
| 2019 |
Cabana F, Clayton JB, Nekaris KAI, Wirdateti W, Knights D, Seedorf H. Nutrient-based diet modifications impact on the gut microbiome of the Javan slow loris (Nycticebus javanicus). Scientific Reports. 9: 4078. PMID 30858577 DOI: 10.1038/S41598-019-40911-0 |
0.324 |
|
| 2019 |
Aschard H, Laville V, Tchetgen ET, Knights D, Imhann F, Seksik P, Zaitlen N, Silverberg MS, Cosnes J, Weersma RK, Xavier R, Beaugerie L, Skurnik D, Sokol H. Genetic effects on the commensal microbiota in inflammatory bowel disease patients. Plos Genetics. 15: e1008018. PMID 30849075 DOI: 10.1371/Journal.Pgen.1008018 |
0.333 |
|
| 2019 |
Shmagel A, Demmer R, Knights D, Butler M, Langsetmo L, Lane NE, Ensrud K. The Effects of Glucosamine and Chondroitin Sulfate on Gut Microbial Composition: A Systematic Review of Evidence from Animal and Human Studies. Nutrients. 11. PMID 30704054 DOI: 10.3390/Nu11020294 |
0.367 |
|
| 2019 |
Holtan SG, Shabaneh A, Rashidi A, Betts BC, MacMillan ML, Ustun C, Amin K, Vaughn B, Howard J, Khoruts A, Knights D, Arora M, Defor TE, Johnson D, Panoskaltsis-Mortari A, et al. RNA Sequencing of Intestinal Biopsies Expands the T Cell-Centric Paradigm of Steroid-Refractory Acute Graft-Versus-Host Disease Biology of Blood and Marrow Transplantation. 25. DOI: 10.1016/J.Bbmt.2018.12.673 |
0.31 |
|
| 2019 |
Rashidi A, Kaiser T, Shields-Cutler R, Graiziger C, Ur Rehman T, Holtan SG, Weisdorf DJ, Knights D, Khoruts A, Staley C. Gut Dysbiosis Increases Gut Barrier Damage during Anti-Leukemia Chemotherapy: Implications for Acute Graft-Versus-Host Disease Biology of Blood and Marrow Transplantation. 25: S142-S143. DOI: 10.1016/J.Bbmt.2018.12.433 |
0.324 |
|
| 2019 |
Rashidi A, Kaiser T, Shields-Cutler R, Graiziger C, Rehman TU, Holtan SG, Weisdorf DJ, Knights D, Khoruts A, Staley C. Outpatient-to-Inpatient Transition Causes Marked Dysbiosis in Allogeneic Hematopoietic Cell Transplantation Recipients Biology of Blood and Marrow Transplantation. 25: S47. DOI: 10.1016/J.Bbmt.2018.12.124 |
0.318 |
|
| 2018 |
Vangay P, Johnson AJ, Ward TL, Al-Ghalith GA, Shields-Cutler RR, Hillmann BM, Lucas SK, Beura LK, Thompson EA, Till LM, Batres R, Paw B, Pergament SL, Saenyakul P, Xiong M, ... ... Knights D, et al. US Immigration Westernizes the Human Gut Microbiome. Cell. 175: 962-972.e10. PMID 30388453 DOI: 10.1016/J.Cell.2018.10.029 |
0.323 |
|
| 2018 |
Montassier E, Al-Ghalith GA, Hillmann B, Viskocil K, Kabage AJ, McKinlay CE, Sadowsky MJ, Khoruts A, Knights D. CLOUD: a non-parametric detection test for microbiome outliers. Microbiome. 6: 137. PMID 30081949 DOI: 10.1186/S40168-018-0514-4 |
0.331 |
|
| 2018 |
Clayton JB, Al-Ghalith GA, Long HT, Tuan BV, Cabana F, Huang H, Vangay P, Ward T, Minh VV, Tam NA, Dat NT, Travis DA, Murtaugh MP, Covert H, Glander KE, ... ... Knights D, et al. Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model. Scientific Reports. 8: 11159. PMID 30042392 DOI: 10.1038/S41598-018-29277-X |
0.398 |
|
| 2018 |
Zhang XS, Li J, Krautkramer KA, Badri M, Battaglia T, Borbet TC, Koh H, Ng S, Sibley RA, Li Y, Pathmasiri W, Jindal S, Shields-Cutler RR, Hillmann B, Al-Ghalith GA, ... ... Knights D, et al. Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity. Elife. 7. PMID 30039798 DOI: 10.7554/Elife.37816 |
0.323 |
|
| 2018 |
Clayton JB, Gomez A, Amato K, Knights D, Travis DA, Blekhman R, Knight R, Leigh S, Stumpf R, Wolf T, Glander KE, Cabana F, Johnson TJ. The gut microbiome of nonhuman primates: Lessons in ecology and evolution. American Journal of Primatology. e22867. PMID 29862519 DOI: 10.1002/Ajp.22867 |
0.396 |
|
| 2018 |
Le Bastard Q, Ward T, Sidiropoulos D, Hillmann BM, Chun CL, Sadowsky MJ, Knights D, Montassier E. Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice. Scientific Reports. 8: 6219. PMID 29670191 DOI: 10.1038/S41598-018-24342-X |
0.328 |
|
| 2018 |
Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, et al. Publisher Correction: Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. PMID 29440750 DOI: 10.1038/S41564-018-0114-X |
0.314 |
|
| 2018 |
Costea PI, Hildebrand F, Manimozhiyan A, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, et al. Enterotypes in the landscape of gut microbial community composition. Nature Microbiology. 3: 8-16. PMID 29255284 DOI: 10.1038/S41564-017-0072-8 |
0.367 |
|
| 2018 |
Rashidi A, Ebadi M, Shields-Cutler R, DeFor TE, Knights D, Weisdorf DJ. Pre-Engraftment Gut Colonization with Enterococcus Casseliflavus Improves Survival after Allogeneic Hematopoietic Cell Transplantation Blood. 132: 813-813. DOI: 10.1182/Blood-2018-99-111630 |
0.315 |
|
| 2018 |
Muniz-Pedrogo DA, Chen J, Hillmann BM, Jeraldo P, Saffouri G, Al-Ghalith GA, Friton J, Taneja V, Davis JM, Knights D, Nelson H, Faubion W, Raffals LH, Kashyap P. Mo1934 - Gut Microbial Markers of Arthritis Including Inflammatory Bowel Disease Associated Arthropathy Gastroenterology. 154. DOI: 10.1016/S0016-5085(18)32898-1 |
0.305 |
|
| 2017 |
Schulfer AF, Battaglia T, Alvarez Y, Bijnens L, Ruiz VE, Ho M, Robinson S, Ward T, Cox LM, Rogers AB, Knights D, Sartor RB, Blaser MJ. Intergenerational transfer of antibiotic-perturbed microbiota enhances colitis in susceptible mice. Nature Microbiology. PMID 29180726 DOI: 10.1038/S41564-017-0075-5 |
0.324 |
|
| 2017 |
Lynch J, Tang K, Priya S, Sands J, Sands M, Tang E, Mukherjee S, Knights D, Blekhman R. HOMINID: A framework for identifying associations between host genetic variation and microbiome composition. Gigascience. PMID 29126115 DOI: 10.1093/Gigascience/Gix107 |
0.324 |
|
| 2017 |
Luca F, Kupfer SS, Knights D, Khoruts A, Blekhman R. Functional Genomics of Host-Microbiome Interactions in Humans. Trends in Genetics : Tig. PMID 29107345 DOI: 10.1016/J.Tig.2017.10.001 |
0.331 |
|
| 2017 |
Karl JP, Meydani M, Barnett JB, Vanegas SM, Barger K, Fu X, Goldin B, Kane A, Rasmussen H, Vangay P, Knights D, Jonnalagadda SS, Saltzman E, Roberts SB, Meydani SN, et al. Fecal concentrations of bacterially derived vitamin K forms are associated with gut microbiota composition but not plasma or fecal cytokine concentrations in healthy adults. The American Journal of Clinical Nutrition. PMID 28814395 DOI: 10.3945/Ajcn.117.155424 |
0.316 |
|
| 2017 |
Springer A, Fichtel C, Al-Ghalith GA, Koch F, Amato KR, Clayton JB, Knights D, Kappeler PM. Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi). Ecology and Evolution. 7: 5732-5745. PMID 28808547 DOI: 10.1002/Ece3.3148 |
0.36 |
|
| 2017 |
Torres S, Clayton JB, Danzeisen JL, Ward T, Huang H, Knights D, Johnson TJ. Diverse bacterial communities exist on canine skin and are impacted by cohabitation and time. Peerj. 5: e3075. PMID 28289569 DOI: 10.7717/Peerj.3075 |
0.34 |
|
| 2017 |
Gevers D, Kugathasan S, Knights D, Kostic AD, Knight R, Xavier RJ. A Microbiome Foundation for the Study of Crohn's Disease. Cell Host & Microbe. 21: 301-304. PMID 28279336 DOI: 10.1016/J.Chom.2017.02.012 |
0.307 |
|
| 2017 |
Ward TL, Knights D, Gale CA. Infant fungal communities: current knowledge and research opportunities. Bmc Medicine. 15: 30. PMID 28190400 DOI: 10.1186/S12916-017-0802-Z |
0.315 |
|
| 2016 |
Lin YW, Montassier E, Knights D, Wei LN. Gut microbiota from metabolic disease-resistant, macrophage-specific RIP140 knockdown mice improves metabolic phenotype and gastrointestinal integrity. Scientific Reports. 6: 38599. PMID 27929078 DOI: 10.1038/Srep38599 |
0.324 |
|
| 2016 |
Livanos AE, Greiner TU, Vangay P, Pathmasiri W, Stewart D, McRitchie S, Li H, Chung J, Sohn J, Kim S, Gao Z, Barber C, Kim J, Ng S, Rogers AB, ... ... Knights D, et al. Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice. Nature Microbiology. 1: 16140. PMID 27782139 DOI: 10.1038/Nmicrobiol.2016.140 |
0.322 |
|
| 2016 |
Maldonado-Gómez MX, Martínez I, Bottacini F, O'Callaghan A, Ventura M, van Sinderen D, Hillmann B, Vangay P, Knights D, Hutkins RW, Walter J. Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome. Cell Host & Microbe. PMID 27693307 DOI: 10.1016/J.Chom.2016.09.001 |
0.401 |
|
| 2016 |
Clayton JB, Vangay P, Huang H, Ward T, Hillmann BM, Al-Ghalith GA, Travis DA, Long HT, Tuan BV, Minh VV, Cabana F, Nadler T, Toddes B, Murphy T, Glander KE, ... ... Knights D, et al. Captivity humanizes the primate microbiome. Proceedings of the National Academy of Sciences of the United States of America. PMID 27573830 DOI: 10.1073/Pnas.1521835113 |
0.37 |
|
| 2016 |
Khoruts A, Hippen KL, Lemire AM, Holtan SG, Knights D, Young JH. Toward revision of antimicrobial therapies in hematopoietic stem cell transplantation: target the pathogens, but protect the indigenous microbiota. Translational Research : the Journal of Laboratory and Clinical Medicine. PMID 27513211 DOI: 10.1016/J.Trsl.2016.07.013 |
0.321 |
|
| 2016 |
Gohl DM, Vangay P, Garbe J, MacLean A, Hauge A, Becker A, Gould TJ, Clayton JB, Johnson TJ, Hunter R, Knights D, Beckman KB. Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies. Nature Biotechnology. PMID 27454739 DOI: 10.1038/Nbt.3601 |
0.313 |
|
| 2016 |
Montassier E, Al-Ghalith GA, Ward T, Corvec S, Gastinne T, Potel G, Moreau P, de la Cochetiere MF, Batard E, Knights D. Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection. Genome Medicine. 8: 49. PMID 27121964 DOI: 10.1186/S13073-016-0301-4 |
0.319 |
|
| 2016 |
Vanegas SM, Meydani M, Barnett JB, Kane A, Goldin B, Wu D, Karl JP, Brown C, Vangay P, Knights D, Li L, Jonnalagadda SS, Thomas M, Satlzman E, Meydani SN. Effect of a Diet Rich in Whole Grains on Gut Microbiota, and Immune and Inflammatory Markers of Healthy Adults The Faseb Journal. 30. DOI: 10.1096/Fasebj.30.1_Supplement.296.8 |
0.302 |
|
| 2015 |
Danzeisen JL, Clayton JB, Huang H, Knights D, McComb B, Hayer SS, Johnson TJ. Temporal Relationships Exist Between Cecum, Ileum, and Litter Bacterial Microbiomes in a Commercial Turkey Flock, and Subtherapeutic Penicillin Treatment Impacts Ileum Bacterial Community Establishment. Frontiers in Veterinary Science. 2: 56. PMID 26664983 DOI: 10.3389/Fvets.2015.00056 |
0.372 |
|
| 2015 |
Burns MB, Lynch J, Starr TK, Knights D, Blekhman R. Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment. Genome Medicine. 7: 55. PMID 26170900 DOI: 10.1186/S13073-015-0177-8 |
0.324 |
|
| 2015 |
Montassier E, Gastinne T, Vangay P, Al-Ghalith GA, Bruley des Varannes S, Massart S, Moreau P, Potel G, de La Cochetière MF, Batard E, Knights D. Chemotherapy-driven dysbiosis in the intestinal microbiome. Alimentary Pharmacology & Therapeutics. 42: 515-28. PMID 26147207 DOI: 10.1111/Apt.13302 |
0.337 |
|
| 2015 |
Vangay P, Ward T, Gerber JS, Knights D. Antibiotics, pediatric dysbiosis, and disease. Cell Host & Microbe. 17: 553-64. PMID 25974298 DOI: 10.1016/J.Chom.2015.04.006 |
0.337 |
|
| 2015 |
Weingarden A, González A, Vázquez-Baeza Y, Weiss S, Humphry G, Berg-Lyons D, Knights D, Unno T, Bobr A, Kang J, Khoruts A, Knight R, Sadowsky MJ. Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection. Microbiome. 3: 10. PMID 25825673 DOI: 10.1186/S40168-015-0070-0 |
0.306 |
|
| 2015 |
Heisel T, Podgorski H, Staley CM, Knights D, Sadowsky MJ, Gale CA. Complementary amplicon-based genomic approaches for the study of fungal communities in humans. Plos One. 10: e0116705. PMID 25706290 DOI: 10.1371/Journal.Pone.0116705 |
0.392 |
|
| 2014 |
Knights D, Silverberg MS, Weersma RK, Gevers D, Dijkstra G, Huang H, Tyler AD, van Sommeren S, Imhann F, Stempak JM, Huang H, Vangay P, Al-Ghalith GA, Russell C, Sauk J, et al. Complex host genetics influence the microbiome in inflammatory bowel disease. Genome Medicine. 6: 107. PMID 25587358 DOI: 10.1186/S13073-014-0107-1 |
0.374 |
|
| 2014 |
Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J, White O. Advancing the microbiome research community. Cell. 159: 227-30. PMID 25303518 DOI: 10.1016/J.Cell.2014.09.022 |
0.304 |
|
| 2014 |
Huang H, Vangay P, McKinlay CE, Knights D. Multi-omics analysis of inflammatory bowel disease. Immunology Letters. 162: 62-8. PMID 25131220 DOI: 10.1016/J.Imlet.2014.07.014 |
0.342 |
|
| 2014 |
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host & Microbe. 15: 382-92. PMID 24629344 DOI: 10.1016/J.Chom.2014.02.005 |
0.325 |
|
| 2013 |
Metcalf JL, Wegener Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, Humphrey GC, Gebert MJ, Van Treuren W, Berg-Lyons D, Keepers K, Guo Y, Bullard J, Fierer N, Carter DO, et al. A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. Elife. 2: e01104. PMID 24137541 DOI: 10.7554/Elife.01104 |
0.308 |
|
| 2013 |
Knights D, Lassen KG, Xavier RJ. Advances in inflammatory bowel disease pathogenesis: Linking host genetics and the microbiome Gut. 62: 1505-1510. PMID 24037875 DOI: 10.1136/Gutjnl-2012-303954 |
0.35 |
|
| 2013 |
Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature Biotechnology. 31: 814-21. PMID 23975157 DOI: 10.1038/Nbt.2676 |
0.342 |
|
| 2013 |
Song SJ, Lauber C, Costello EK, Lozupone CA, Humphrey G, Berg-Lyons D, Caporaso JG, Knights D, Clemente JC, Nakielny S, Gordon JI, Fierer N, Knight R. Cohabiting family members share microbiota with one another and with their dogs. Elife. 2: e00458. PMID 23599893 DOI: 10.7554/Elife.00458 |
0.361 |
|
| 2013 |
Smith MI, Yatsunenko T, Manary MJ, Trehan I, Mkakosya R, Cheng J, Kau AL, Rich SS, Concannon P, Mychaleckyj JC, Liu J, Houpt E, Li JV, Holmes E, Nicholson J, ... Knights D, et al. Gut microbiomes of Malawian twin pairs discordant for kwashiorkor. Science (New York, N.Y.). 339: 548-54. PMID 23363771 DOI: 10.1126/Science.1229000 |
0.343 |
|
| 2013 |
Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE. A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. Plos Computational Biology. 9: e1002863. PMID 23326225 DOI: 10.1371/Journal.Pcbi.1002863 |
0.329 |
|
| 2013 |
Harris JK, Caporaso JG, Walker JJ, Spear JR, Gold NJ, Robertson CE, Hugenholtz P, Goodrich J, McDonald D, Knights D, Marshall P, Tufo H, Knight R, Pace NR. Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat. The Isme Journal. 7: 50-60. PMID 22832344 DOI: 10.1038/Ismej.2012.79 |
0.327 |
|
| 2012 |
Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Reinhard K, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM. Insights from characterizing extinct human gut microbiomes. Plos One. 7: e51146. PMID 23251439 DOI: 10.1371/Journal.Pone.0051146 |
0.357 |
|
| 2012 |
Stahringer SS, Clemente JC, Corley RP, Hewitt J, Knights D, Walters WA, Knight R, Krauter KS. Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood. Genome Research. 22: 2146-52. PMID 23064750 DOI: 10.1101/Gr.140608.112 |
0.341 |
|
| 2012 |
Zupancic ML, Cantarel BL, Liu Z, Drabek EF, Ryan KA, Cirimotich S, Jones C, Knight R, Walters WA, Knights D, Mongodin EF, Horenstein RB, Mitchell BD, Steinle N, Snitker S, et al. Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome. Plos One. 7: e43052. PMID 22905200 DOI: 10.1371/Journal.Pone.0043052 |
0.357 |
|
| 2012 |
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, ... ... Knights D, et al. Human gut microbiome viewed across age and geography. Nature. 486: 222-7. PMID 22699611 DOI: 10.1038/Nature11053 |
0.387 |
|
| 2011 |
Verhulst NO, Qiu YT, Beijleveld H, Maliepaard C, Knights D, Schulz S, Berg-Lyons D, Lauber CL, Verduijn W, Haasnoot GW, Mumm R, Bouwmeester HJ, Claas FH, Dicke M, van Loon JJ, et al. Composition of human skin microbiota affects attractiveness to malaria mosquitoes. Plos One. 6: e28991. PMID 22216154 DOI: 10.1371/Journal.Pone.0028991 |
0.326 |
|
| 2011 |
Flores GE, Bates ST, Knights D, Lauber CL, Stombaugh J, Knight R, Fierer N. Microbial biogeography of public restroom surfaces. Plos One. 6: e28132. PMID 22132229 DOI: 10.1371/Journal.Pone.0028132 |
0.321 |
|
| 2011 |
McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, et al. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Science Translational Medicine. 3: 106ra106. PMID 22030749 DOI: 10.1126/Scitranslmed.3002701 |
0.35 |
|
| 2011 |
Knights D, Parfrey LW, Zaneveld J, Lozupone C, Knight R. Human-associated microbial signatures: Examining their predictive value Cell Host and Microbe. 10: 292-296. PMID 22018228 DOI: 10.1016/J.Chom.2011.09.003 |
0.378 |
|
| 2011 |
Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, Sinha R, Gilroy E, Gupta K, Baldassano R, Nessel L, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science (New York, N.Y.). 334: 105-8. PMID 21885731 DOI: 10.1126/Science.1208344 |
0.323 |
|
| 2011 |
Zaneveld JRR, Parfrey LW, Van Treuren W, Lozupone C, Clemente JC, Knights D, Stombaugh J, Kuczynski J, Knight R. Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation Trends in Microbiology. 19: 472-482. PMID 21872475 DOI: 10.1016/J.Tim.2011.07.006 |
0.301 |
|
| 2011 |
Knights D, Kuczynski J, Charlson ES, Zaneveld J, Mozer MC, Collman RG, Bushman FD, Knight R, Kelley ST. Bayesian community-wide culture-independent microbial source tracking Nature Methods. 8: 761-765. PMID 21765408 DOI: 10.1038/Nmeth.1650 |
0.618 |
|
| 2011 |
Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R. Moving pictures of the human microbiome. Genome Biology. 12: R50. PMID 21624126 DOI: 10.1186/Gb-2011-12-5-R50 |
0.326 |
|
| 2011 |
Muegge BD, Kuczynski J, Knights D, Clemente JC, González A, Fontana L, Henrissat B, Knight R, Gordon JI. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans Science. 332: 970-974. PMID 21596990 DOI: 10.1126/Science.1198719 |
0.39 |
|
| 2011 |
Werner JJ, Knights D, Garcia ML, Scalfone NB, Smith S, Yarasheski K, Cummings TA, Beers AR, Knight R, Angenent LT. Bacterial community structures are unique and resilient in full-scale bioenergy systems Proceedings of the National Academy of Sciences of the United States of America. 108: 4158-4163. PMID 21368115 DOI: 10.1073/Pnas.1015676108 |
0.346 |
|
| 2011 |
Knights D, Costello EK, Knight R. Supervised classification of human microbiota. Fems Microbiology Reviews. 35: 343-59. PMID 21039646 DOI: 10.1111/J.1574-6976.2010.00251.X |
0.372 |
|
| 2011 |
Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R. UniFrac: An effective distance metric for microbial community comparison Isme Journal. 5: 169-172. PMID 20827291 DOI: 10.1038/Ismej.2010.133 |
0.327 |
|
| 2010 |
Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R. Direct sequencing of the human microbiome readily reveals community differences. Genome Biology. 11: 210. PMID 20441597 DOI: 10.1186/Gb-2010-11-5-210 |
0.338 |
|
| 2010 |
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Methods. 7: 335-6. PMID 20383131 DOI: 10.1038/Nmeth.F.303 |
0.303 |
|
| 2009 |
Knights D, Mytkowicz T, Sweeney PF, Mozer MC, Diwan A. Blind optimization for exploiting hardware features Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5501: 251-265. DOI: 10.1007/978-3-642-00722-4_18 |
0.522 |
|
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