Michael J. Berry - Publications

Affiliations: 
Princeton University, Princeton, NJ 
Area:
Retina
Website:
http://molbio.princeton.edu/faculty/molbio-faculty/95-berry

65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Prentice JS, Marre O, Ioffe ML, Loback AR, Tkačik G, Berry MJ. Error-Robust Modes of the Retinal Population Code. Plos Computational Biology. 12: e1005148. PMID 27855154 DOI: 10.1371/journal.pcbi.1005148  0.8
2015 Tkačik G, Mora T, Marre O, Amodei D, Palmer SE, Berry MJ, Bialek W. Thermodynamics and signatures of criticality in a network of neurons. Proceedings of the National Academy of Sciences of the United States of America. 112: 11508-13. PMID 26330611 DOI: 10.1073/pnas.1514188112  1
2015 Marre O, Botella-Soler V, Simmons KD, Mora T, Tkačik G, Berry MJ. High Accuracy Decoding of Dynamical Motion from a Large Retinal Population. Plos Computational Biology. 11: e1004304. PMID 26132103 DOI: 10.1371/journal.pcbi.1004304  0.8
2015 Palmer SE, Marre O, Berry MJ, Bialek W. Predictive information in a sensory population. Proceedings of the National Academy of Sciences of the United States of America. 112: 6908-13. PMID 26038544 DOI: 10.1073/pnas.1506855112  1
2015 Marre O, Botella-Soler V, Simmons KD, Mora T, Tkačik G, Berry MJ. High Accuracy Decoding of Dynamical Motion from a Large Retinal Population Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004304  1
2014 da Silveira RA, Berry MJ. High-fidelity coding with correlated neurons. Plos Computational Biology. 10: e1003970. PMID 25412463 DOI: 10.1371/journal.pcbi.1003970  1
2014 Chen EY, Chou J, Park J, Schwartz G, Berry MJ. The neural circuit mechanisms underlying the retinal response to motion reversal. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 15557-75. PMID 25411485 DOI: 10.1523/JNEUROSCI.1460-13.2014  1
2014 Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ. Searching for collective behavior in a large network of sensory neurons. Plos Computational Biology. 10: e1003408. PMID 24391485 DOI: 10.1371/journal.pcbi.1003408  1
2014 Berry M, Kölling M. The state of play: A notional machine for learning programming Iticse 2014 - Proceedings of the 2014 Innovation and Technology in Computer Science Education Conference. 21-26. DOI: 10.1145/2591708.2591721  1
2013 Aljadeff J, Segev R, Berry MJ, Sharpee TO. Spike triggered covariance in strongly correlated gaussian stimuli. Plos Computational Biology. 9: e1003206. PMID 24039563 DOI: 10.1371/journal.pcbi.1003206  1
2013 Kaardal J, Fitzgerald JD, Berry MJ, Sharpee TO. Identifying functional bases for multidimensional neural computations. Neural Computation. 25: 1870-90. PMID 23607565 DOI: 10.1162/NECO_a_00465  1
2013 Chen EY, Marre O, Fisher C, Schwartz G, Levy J, da Silveira RA, da Silviera RA, Berry MJ. Alert response to motion onset in the retina. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 120-32. PMID 23283327 DOI: 10.1523/JNEUROSCI.3749-12.2013  1
2013 Berry M, Kölling M. The design and implementation of a notional machine for teaching introductory programming Acm International Conference Proceeding Series. 25-28. DOI: 10.1145/2532748.2532765  1
2013 Berry MJ, Tka?ik G, Dubuis J, Marre O, Da Silveira RA. A simple method for estimating the entropy of neural activity Journal of Statistical Mechanics: Theory and Experiment. 2013. DOI: 10.1088/1742-5468/2013/03/P03015  1
2013 Tka?ik G, Marre O, Mora T, Amodei D, Berry MJ, Bialek W. The simplest maximum entropy model for collective behavior in a neural network Journal of Statistical Mechanics: Theory and Experiment. 2013. DOI: 10.1088/1742-5468/2013/03/P03011  1
2012 Marre O, Amodei D, Deshmukh N, Sadeghi K, Soo F, Holy TE, Berry MJ. Mapping a complete neural population in the retina. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 14859-73. PMID 23100409 DOI: 10.1523/JNEUROSCI.0723-12.2012  1
2012 Nguyen TD, Deshmukh N, Nagarah JM, Kramer T, Purohit PK, Berry MJ, McAlpine MC. Piezoelectric nanoribbons for monitoring cellular deformations. Nature Nanotechnology. 7: 587-93. PMID 22796742 DOI: 10.1038/nnano.2012.112  1
2012 Schwartz G, Macke J, Amodei D, Tang H, Berry MJ. Low error discrimination using a correlated population code. Journal of Neurophysiology. 108: 1069-88. PMID 22539825 DOI: 10.1152/jn.00564.2011  1
2012 Vasquez JC, Marre O, Palacios AG, Berry MJ, Cessac B. Gibbs distribution analysis of temporal correlations structure in retina ganglion cells. Journal of Physiology, Paris. 106: 120-7. PMID 22115900 DOI: 10.1016/j.jphysparis.2011.11.001  1
2011 Schneidman E, Puchalla JL, Segev R, Harris RA, Bialek W, Berry MJ. Synergy from silence in a combinatorial neural code. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 15732-41. PMID 22049416 DOI: 10.1523/JNEUROSCI.0301-09.2011  1
2011 Soo FS, Schwartz GW, Sadeghi K, Berry MJ. Fine spatial information represented in a population of retinal ganglion cells. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 2145-55. PMID 21307251 DOI: 10.1523/JNEUROSCI.5129-10.2011  1
2011 Zhang Y, Liang R, Li Y, Zheng Y, Berry M. Behavior-based telecommunication churn prediction with neural network approach Proceedings - 2011 International Symposium On Computer Science and Society, Isccs 2011. 307-310. DOI: 10.1109/ISCCS.2011.89  1
2011 Berry MJ, Schwartz G. The Retina as Embodying Predictions about the Visual World Predictions in the Brain: Using Our Past to Generate a Future. DOI: 10.1093/acprof:oso/9780195395518.003.0107  1
2011 Zheng Y, Wang H, Zhang Y, Berry M, Ge X, Li Y. A comprehensive examination mode for chemistry course in university Advances in Intelligent and Soft Computing. 108: 445-451. DOI: 10.1007/978-3-642-24775-0_70  1
2011 Zhang Y, Liang R, Zheng Y, Berry M, Wang Y, Li Y. Teaching object oriented database with Db4o Advances in Intelligent and Soft Computing. 108: 243-248. DOI: 10.1007/978-3-642-24775-0_38  1
2009 Gao J, Schwartz G, Berry MJ, Holmes P. An oscillatory circuit underlying the detection of disruptions in temporally-periodic patterns. Network (Bristol, England). 20: 106-35. PMID 19568983 DOI: 10.1080/09548980902991705  1
2008 Schwartz G, Berry MJ. Sophisticated temporal pattern recognition in retinal ganglion cells. Journal of Neurophysiology. 99: 1787-98. PMID 18272878 DOI: 10.1152/jn.01025.2007  1
2008 Glass RS, Berry MJ, Block E, Boakye HT, Carlson BA, Gailer J, George GN, Gladyshev VN, Hatfield DL, Jacobsen NE, Johnson S, Kahakachchi C, Kaminski R, Manley SA, Mix H, et al. Insights into the chemical biology of selenium Phosphorus, Sulfur and Silicon and the Related Elements. 183: 924-930. DOI: 10.1080/10426500801898366  0.64
2008 Kitchenham B, Al-Khilidar H, Babar MA, Berry M, Cox K, Keung J, Kurniawati F, Staples M, Zhang H, Zhu L. Evaluating guidelines for reporting empirical software engineering studies Empirical Software Engineering. 13: 97-121. DOI: 10.1007/s10664-007-9053-5  1
2007 Schwartz G, Taylor S, Fisher C, Harris R, Berry MJ. Synchronized firing among retinal ganglion cells signals motion reversal. Neuron. 55: 958-69. PMID 17880898 DOI: 10.1016/j.neuron.2007.07.042  1
2007 Segev R, Schneidman E, Goodhouse J, Berry MJ. Role of eye movements in the retinal code for a size discrimination task. Journal of Neurophysiology. 98: 1380-91. PMID 17625063 DOI: 10.1152/jn.00395.2007  1
2007 Schwartz G, Harris R, Shrom D, Berry MJ. Detection and prediction of periodic patterns by the retina. Nature Neuroscience. 10: 552-4. PMID 17450138 DOI: 10.1038/nn1887  1
2006 Fairhall AL, Burlingame CA, Narasimhan R, Harris RA, Puchalla JL, Berry MJ. Selectivity for multiple stimulus features in retinal ganglion cells. Journal of Neurophysiology. 96: 2724-38. PMID 16914609 DOI: 10.1152/jn.00995.2005  1
2006 Koch K, McLean J, Segev R, Freed MA, Berry MJ, Balasubramanian V, Sterling P. How much the eye tells the brain. Current Biology : Cb. 16: 1428-34. PMID 16860742 DOI: 10.1016/j.cub.2006.05.056  1
2006 Schneidman E, Berry MJ, Segev R, Bialek W. Weak pairwise correlations imply strongly correlated network states in a neural population. Nature. 440: 1007-12. PMID 16625187 DOI: 10.1038/nature04701  1
2006 Segev R, Puchalla J, Berry MJ. Functional organization of ganglion cells in the salamander retina. Journal of Neurophysiology. 95: 2277-92. PMID 16306176 DOI: 10.1152/jn.00928.2005  1
2006 Kitchenham B, Al-Khilidar H, Babar MA, Berry M, Cox K, Keung J, Kurniawati F, Staples M, He Z, Liming Z. Evaluating guidelines for empirical software engineering studies Isese'06 - Proceedings of the 5th Acm-Ieee International Symposium On Empirical Software Engineering. 2006: 38-47. DOI: 10.1145/1159733.1159742  1
2006 Berry M, Aurum A. Measurement and decision making Value-Based Software Engineering. 155-177. DOI: 10.1007/3-540-29263-2_8  1
2005 Puchalla JL, Schneidman E, Harris RA, Berry MJ. Redundancy in the population code of the retina. Neuron. 46: 493-504. PMID 15882648 DOI: 10.1016/j.neuron.2005.03.026  1
2004 Segev R, Goodhouse J, Puchalla J, Berry MJ. Recording spikes from a large fraction of the ganglion cells in a retinal patch. Nature Neuroscience. 7: 1154-61. PMID 15452581 DOI: 10.1038/nn1323  1
2004 Koch K, McLean J, Berry M, Sterling P, Balasubramanian V, Freed MA. Efficiency of information transmission by retinal ganglion cells. Current Biology : Cb. 14: 1523-30. PMID 15341738 DOI: 10.1016/j.cub.2004.08.060  1
2004 Berry M, Jeffery R, Aurum A. Assessment of Software Measurement: An Information Quality Study Proceedings - International Software Metrics Symposium. 314-325. DOI: 10.1109/METRIC.2004.1357917  1
2003 Schneidman E, Bialek W, Berry MJ. Synergy, redundancy, and independence in population codes. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 11539-53. PMID 14684857  1
2003 Schneidman E, Still S, Berry MJ, Bialek W. Network information and connected correlations. Physical Review Letters. 91: 238701. PMID 14683220 DOI: 10.1103/PhysRevLett.91.238701  1
2003 Schneidman E, Bialek W, Berry MJ. An information theoretic approach to the functional classification of neurons Advances in Neural Information Processing Systems 1
2002 Balasubramanian V, Berry MJ. A test of metabolically efficient coding in the retina. Network (Bristol, England). 13: 531-52. PMID 12463343 DOI: 10.1088/0954-898X/13/4/306  1
2001 Balasubramanian V, Kimber D, Berry MJ. Metabolically efficient information processing. Neural Computation. 13: 799-815. PMID 11255570 DOI: 10.1162/089976601300014358  1
2001 Berry M, Vandenbroek MF. A targeted assessment of the software measurement process International Software Metrics Symposium, Proceedings. 222-235.  1
2000 Butler M, Burgener A, Patrick M, Berry M, Moffatt D, Huzel N, Barnabe N, Coombs K. Application of a serum-free medium for the growth of Vero cells and the production of reovirus Biotechnology Progress. 16: 854-858. PMID 11027181 DOI: 10.1021/bp000110+  1
2000 Berry M, Jeffery R. Instrument for assessing software measurement programs Empirical Software Engineering. 5: 183-200. DOI: 10.1023/A:1026534430984  1
1999 Meister M, Berry MJ. The neural code of the retina. Neuron. 22: 435-50. PMID 10197525  1
1999 Berry MJ, Brivanlou IH, Jordan TA, Meister M. Anticipation of moving stimuli by the retina. Nature. 398: 334-8. PMID 10192333 DOI: 10.1038/18678  1
1998 Berry MJ, Meister M. Refractoriness and neural precision. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 18: 2200-11. PMID 9482804  1
1998 Katine JA, Berry MJ, Westervelt RM, Gossard AC. Determination of the electronic phase coherence time in one-dimensional channels Physical Review B - Condensed Matter and Materials Physics. 57: 1698-1702.  1
1997 Berry MJ, Warland DK, Meister M. The structure and precision of retinal spike trains. Proceedings of the National Academy of Sciences of the United States of America. 94: 5411-6. PMID 9144251 DOI: 10.1073/pnas.94.10.5411  1
1997 Smirnakis SM, Berry MJ, Warland DK, Bialek W, Meister M. Adaptation of retinal processing to image contrast and spatial scale. Nature. 386: 69-73. PMID 9052781 DOI: 10.1038/386069a0  1
1996 Waugh FR, Berry MJ, Crouch CH, Livermore C, Mar DJ, Westervelt RM, Campman KL, Gossard AC. Measuring interactions between tunnel-coupled quantum dots. Physical Review. B, Condensed Matter. 53: 1413-1420. PMID 9983601  1
1995 Waugh FR, Berry MJ, Mar DJ, Westervelt RM, Campman KL, Gossard AC. Single-electron charging in double and triple quantum dots with tunable coupling. Physical Review Letters. 75: 705-708. PMID 10060093 DOI: 10.1103/PhysRevLett.75.705  1
1994 Berry MJ, Katine JA, Westervelt RM, Gossard AC. Influence of shape on electron transport in ballistic quantum dots. Physical Review. B, Condensed Matter. 50: 17721-17724. PMID 9976200 DOI: 10.1103/PhysRevB.50.17721  1
1994 Berry MJ, Baskey JH, Westervelt RM, Gossard AC. Coherent electronic backscattering in ballistic microstructures. Physical Review. B, Condensed Matter. 50: 8857-8860. PMID 9974910 DOI: 10.1103/PhysRevB.50.8857  1
1994 Berry MJ, Wattam TA, Willets J, Lindner N, de Graaf T, Hunt T, Gani M, Davis PJ, Porter P. Assay and purification of Fv fragments in fermenter cultures: design and evaluation of generic binding reagents. Journal of Immunological Methods. 167: 173-82. PMID 7508476  0.36
1994 Berry MJ, Katine JA, Marcus CM, Westervelt RM, Gossard AC. Weak localization and conductance fluctuations in a chaotic quantum dot Surface Science. 305: 495-500. DOI: 10.1016/0039-6028(94)90942-3  1
1994 Katine JA, Berry MJ, Westervelt RM, Gossard AC. Measurement of the electronic dephasing time via the weak localization effect in a narrow channel Superlattices and Microstructures. 16: 211. DOI: 10.1006/spmi.1994.1142  1
1994 Jeffery R, Basili V, Berry M. Establishing measurement for software quality improvement Ifip Transactions a: Computer Science and Technology. 319-329.  1
1994 Yang S, Adourian AS, Berry MJ, Westervelt RM, Gossard AC, Campman KL. Observation of collective and single-particle effects in conductance oscillations in a 'quantum donut' Superlattices and Microstructures. 16: 235-238.  1
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