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Kranthi K. Mandadapu, Ph.D. - Publications

Affiliations: 
2011 Mechanical Engineering University of California, Berkeley, Berkeley, CA, United States 
Area:
Statistical Mechanics, Fluid and Solid Mechanics, Biological Membranes, Bacterial Motility, Materials Science
Website:
https://chemistry.berkeley.edu/faculty/cbe/mandadapu
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Fraggedakis D, Hasyim MR, Mandadapu KK. Inherent-state melting and the onset of glassy dynamics in two-dimensional supercooled liquids. Proceedings of the National Academy of Sciences of the United States of America. 120: e2209144120. PMID 37000846 DOI: 10.1073/pnas.2209144120  0.706
2021 Ahmed M, Blum M, Crumlin EJ, Geissler PL, Head-Gordon T, Limmer DT, Mandadapu KK, Saykally RJ, Wilson KR. Molecular Properties and Chemical Transformations Near Interfaces. The Journal of Physical Chemistry. B. PMID 34365795 DOI: 10.1021/acs.jpcb.1c03756  0.665
2021 Cox SJ, Mandadapu KK, Geissler PL. Quadrupole-mediated dielectric response and the charge-asymmetric solvation of ions in water. The Journal of Chemical Physics. 154: 244502. PMID 34241373 DOI: 10.1063/5.0051399  0.522
2021 GrandPre T, Klymko K, Mandadapu KK, Limmer DT. Entropy production fluctuations encode collective behavior in active matter. Physical Review. E. 103: 012613. PMID 33601608 DOI: 10.1103/PhysRevE.103.012613  0.577
2020 Omar YAD, Sahu A, Sauer RA, Mandadapu KK. Nonaxisymmetric Shapes of Biological Membranes from Locally Induced Curvature. Biophysical Journal. PMID 32860742 DOI: 10.1016/J.Bpj.2020.07.021  0.33
2020 Sahu A, Glisman A, Tchoufag J, Mandadapu KK. Geometry and dynamics of lipid membranes: The Scriven-Love number. Physical Review. E. 101: 052401. PMID 32575240 DOI: 10.1103/Physreve.101.052401  0.383
2020 Hargus C, Klymko K, Epstein JM, Mandadapu KK. Time reversal symmetry breaking and odd viscosity in active fluids: Green-Kubo and NEMD results. The Journal of Chemical Physics. 152: 201102. PMID 32486675 DOI: 10.1063/5.0006441  0.345
2020 Sahu A, Omar YA, Sauer RA, Mandadapu KK. Arbitrary Lagrangian–Eulerian finite element method for curved and deforming surfaces Journal of Computational Physics. 407: 109253. DOI: 10.1016/J.Jcp.2020.109253  0.307
2020 Sahu A, Tchoufag J, Omar YAD, Pan Y, Mandadapu KK. Non-equilibrium Thermodynamics and Hydrodynamics of Lipid Membranes Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.1016  0.303
2020 Paul K, Zimmermann C, Mandadapu KK, Hughes TJR, Landis CM, Sauer RA. An adaptive space-time phase field formulation for dynamic fracture of brittle shells based on LR NURBS Computational Mechanics. 65: 1039-1062. DOI: 10.1007/S00466-019-01807-Y  0.323
2019 Tchoufag J, Ghosh P, Pogue CB, Nan B, Mandadapu KK. Mechanisms for bacterial gliding motility on soft substrates. Proceedings of the National Academy of Sciences of the United States of America. PMID 31767758 DOI: 10.1073/Pnas.1914678116  0.695
2019 Katira S, Garrahan JP, Mandadapu KK. Theory for Glassy Behavior of Supercooled Liquid Mixtures. Physical Review Letters. 123: 100602. PMID 31573293 DOI: 10.1103/Physrevlett.123.100602  0.359
2019 Epstein JM, Klymko K, Mandadapu KK. Statistical mechanics of transport processes in active fluids. II. Equations of hydrodynamics for active Brownian particles. The Journal of Chemical Physics. 150: 164111. PMID 31042887 DOI: 10.1063/1.5054912  0.32
2019 Zimmermann C, Toshniwal D, Landis CM, Hughes TJ, Mandadapu KK, Sauer RA. An isogeometric finite element formulation for phase transitions on deforming surfaces Computer Methods in Applied Mechanics and Engineering. 351: 441-477. DOI: 10.1016/J.Cma.2019.03.022  0.325
2018 Doubrovinski K, Tchoufag J, Mandadapu K. A simplified mechanism for anisotropic constriction in Drosophila mesoderm. Development. 145. PMID 30401702 DOI: 10.1242/Dev.167387  0.318
2018 Dasbiswas K, Mandadapu KK, Vaikuntanathan S. Topological localization in out-of-equilibrium dissipative systems. Proceedings of the National Academy of Sciences of the United States of America. PMID 30206153 DOI: 10.1073/Pnas.1721096115  0.316
2018 Katira S, Garrahan JP, Mandadapu KK. Solvation in Space-time: Pretransition Effects in Trajectory Space. Physical Review Letters. 120: 260602. PMID 30004722 DOI: 10.1103/Physrevlett.120.260602  0.354
2018 Mandadapu KK, Omar Y, Sahu A, Sauer R. General Non-axisymmetric Shapes of Biological Membranes and their Importance in Understanding Endocytosis Biophysical Journal. 114: 551a. DOI: 10.1016/J.Bpj.2017.11.3010  0.305
2017 Sahu A, Sauer RA, Mandadapu KK. Irreversible thermodynamics of curved lipid membranes. Physical Review. E. 96: 042409. PMID 29347561 DOI: 10.1103/Physreve.96.042409  0.388
2017 Klymko K, Mandal D, Mandadapu KK. Statistical mechanics of transport processes in active fluids: Equations of hydrodynamics. The Journal of Chemical Physics. 147: 194109. PMID 29166113 DOI: 10.1063/1.4997091  0.319
2017 Sauer RA, Duong TX, Mandadapu KK, Steigmann DJ. A stabilized finite element formulation for liquid shells and its application to lipid bilayers Journal of Computational Physics. 330: 436-466. DOI: 10.1016/J.Jcp.2016.11.004  0.334
2017 Katira S, Mandadapu KK, Chandler D. Pre-Transition Effects Mediate Forces of Assembly between Transmembrane Proteins: Recent Results on the Orderphobic Effect Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.2048  0.494
2017 Sauer RA, Mandadapu KK, Duong TX, Sahu A, Omar Y. Advances in the Theoretical and Computational Modeling of Lipid Bilayer Membranes Biophysical Journal. 112: 309a. DOI: 10.1016/J.Bpj.2016.11.1674  0.379
2016 Katira S, Mandadapu KK, Vaikuntanathan S, Smit B, Chandler D. Pre-transition effects mediate forces of assembly between transmembrane proteins. Elife. 5. PMID 26910009 DOI: 10.7554/Elife.13150  0.619
2016 Katira S, Mandadapu KK, Vaikuntanathan S, Smit B, Chandler D. Author response: Pre-transition effects mediate forces of assembly between transmembrane proteins Elife. DOI: 10.7554/Elife.13150.016  0.577
2016 Mercer B, Mandadapu KK, Papadopoulos P. Homogenization of high-frequency wave propagation in linearly elastic layered media using a continuum Irving-Kirkwood theory International Journal of Solids and Structures. 96: 162-172. DOI: 10.1016/J.Ijsolstr.2016.06.011  0.613
2016 Kshirsagar S, Mandadapu KK, Papadopoulos P. Classical molecular dynamics simulations of crystal lattices with truncated Taylor series-based interatomic potentials Computational Materials Science. 120: 127-134. DOI: 10.1016/J.Commatsci.2016.03.032  0.62
2016 Katira S, Mandadapu KK, Vaikuntanathan S, Smit B, Chandler D. Pre-Transition Effects Mediate Forces of Assembly between Transmembrane Proteins: The Orderphobic Effect Biophysical Journal. 110: 567a. DOI: 10.1016/J.Bpj.2015.11.3037  0.619
2015 Mandadapu KK, Nirody JA, Berry RM, Oster G. Mechanics of torque generation in the bacterial flagellar motor. Proceedings of the National Academy of Sciences of the United States of America. 112: E4381-9. PMID 26216959 DOI: 10.1073/Pnas.1501734112  0.306
2015 Mercer BS, Mandadapu KK, Papadopoulos P. Novel formulations of microscopic boundary-value problems in continuous multiscale finite element methods Computer Methods in Applied Mechanics and Engineering. 286: 268-292. DOI: 10.1016/J.Cma.2014.12.021  0.608
2015 Katira S, Mandadapu KK, Vaikuntanathan S, Smit B, Chandler D. A Fundamental Force Governing Protein Self-Assembly in Membranes Biophysical Journal. 108: 241a. DOI: 10.1016/J.Bpj.2014.11.1332  0.609
2015 Mandadapu KK, Katira S, Vaikuntanathan S, Smit B, Chandler D. A Fundamental Force that Regulates Nano-Clustering of Proteins in Biological Membranes Biophysical Journal. 108: 18a. DOI: 10.1016/J.Bpj.2014.11.122  0.61
2014 Rangamani P, Mandadapu KK, Oster G. Effect of Protein-Induced Spontaneous Curvature on Membrane Surface Tension Biophysical Journal. 106: 714a. DOI: 10.1016/J.Bpj.2013.11.3950  0.329
2013 Lee JW, Templeton JA, Mandadapu KK, Zimmerman JA. Comparison of Molecular and Primitive Solvent Models for Electrical Double Layers in Nanochannels. Journal of Chemical Theory and Computation. 9: 3051-61. PMID 26583986 DOI: 10.1021/Ct4002043  0.324
2013 Mandadapu KK, Templeton JA, Lee JW. Polarization as a field variable from molecular dynamics simulations. The Journal of Chemical Physics. 139: 054115. PMID 23927251 DOI: 10.1063/1.4817004  0.346
2013 Rangamani P, Agrawal A, Mandadapu KK, Oster G, Steigmann DJ. Interaction between surface shape and intra-surface viscous flow on lipid membranes. Biomechanics and Modeling in Mechanobiology. 12: 833-45. PMID 23086137 DOI: 10.1007/S10237-012-0447-Y  0.315
2013 Ulz MH, Mandadapu KK, Papadopoulos P. On the estimation of spatial averaging volume for determining stress using atomistic methods Modelling and Simulation in Materials Science and Engineering. 21. DOI: 10.1088/0965-0393/21/1/015010  0.607
2013 Rangamani P, Mandadapu KK, Oster G. Intra-Membrane Surface Flow in Response to Protein Induced Spontaneous Curvature Biophysical Journal. 104: 85a. DOI: 10.1016/J.Bpj.2012.11.511  0.347
2012 Jones RE, Mandadapu KK. Adaptive Green-Kubo estimates of transport coefficients from molecular dynamics based on robust error analysis. The Journal of Chemical Physics. 136: 154102. PMID 22519310 DOI: 10.1063/1.3700344  0.316
2012 Mandadapu KK, Sengupta A, Papadopoulos P. A homogenization method for thermomechanical continua using extensive physical quantities Proceedings of the Royal Society a: Mathematical, Physical and Engineering Sciences. 468: 1696-1715. DOI: 10.1098/Rspa.2011.0578  0.664
2010 Mandadapu KK, Jones RE, Papadopoulos P. A homogeneous nonequilibrium molecular dynamics method for calculating the heat transport coefficient of mixtures and alloys. The Journal of Chemical Physics. 133: 034122. PMID 20649323 DOI: 10.1063/1.3459126  0.635
2009 Mandadapu KK, Jones RE, Papadopoulos P. Generalization of the homogeneous nonequilibrium molecular dynamics method for calculating thermal conductivity to multibody potentials. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 047702. PMID 19905491 DOI: 10.1103/Physreve.80.047702  0.644
2009 Mandadapu KK, Jones RE, Papadopoulos P. A homogeneous nonequilibrium molecular dynamics method for calculating thermal conductivity with a three-body potential. The Journal of Chemical Physics. 130: 204106. PMID 19485436 DOI: 10.1063/1.3141982  0.639
2009 Mandadapu KK, Jones RE, Papadopoulos P. Generalization of the homogeneous nonequilibrium molecular dynamics method for calculating thermal conductivity to multibody potentials Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 80. DOI: 10.1103/PhysRevE.80.047702  0.62
2008 Mandadapu KK, Govindjee S, Mofrad MR. On the cytoskeleton and soft glassy rheology. Journal of Biomechanics. 41: 1467-78. PMID 18402964 DOI: 10.1016/J.Jbiomech.2008.02.014  0.305
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