| Year |
Citation |
Score |
| 2023 |
Wei WQ, Guardo C, Gandireddy S, Yan C, Ong H, Kerchberger V, Dickson A, Pfaff E, Master H, Basford M, Tran N, Mancuso S, Syed T, Zhao Z, Feng Q, ... ... Chute C, et al. Genetic and Survey Data Improves Performance of Machine Learning Model for Long COVID. Research Square. PMID 38196610 DOI: 10.21203/rs.3.rs-3749510/v1 |
0.69 |
|
| 2023 |
Pfaff ER, Girvin AT, Crosskey M, Gangireddy S, Master H, Wei WQ, Kerchberger VE, Weiner M, Harris PA, Basford M, Lunt C, Chute CG, Moffitt RA, Haendel M. De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository. Journal of the American Medical Informatics Association : Jamia. PMID 37218289 DOI: 10.1093/jamia/ocad077 |
0.635 |
|
| 2022 |
Brandt PS, Kho A, Luo Y, Pacheco JA, Walunas TL, Hakonarson H, Hripcsak G, Liu C, Shang N, Weng C, Walton N, Carrell DS, Crane PK, Larson EB, Chute CG, et al. Characterizing variability of electronic health record-driven phenotype definitions. Journal of the American Medical Informatics Association : Jamia. PMID 36474423 DOI: 10.1093/jamia/ocac235 |
0.624 |
|
| 2020 |
Dikilitas O, Schaid DJ, Kosel ML, Carroll RJ, Chute CG, Denny JA, Fedotov A, Feng Q, Hakonarson H, Jarvik GP, Lee MTM, Pacheco JA, Rowley R, Sleiman PM, Stein CM, et al. Predictive Utility of Polygenic Risk Scores for Coronary Heart Disease in Three Major Racial and Ethnic Groups. American Journal of Human Genetics. 106: 707-716. PMID 32386537 DOI: 10.1016/J.Ajhg.2020.04.002 |
0.663 |
|
| 2019 |
Fecho K, Ahalt SC, Arunachalam S, Champion J, Chute CG, Davis S, Gersing K, Glusman G, Hadlock J, Lee J, Pfaff E, Robinson M, Sid E, Ta C, Xu H, et al. Sex, Obesity, Diabetes, and Exposure to Particulate Matter among Patients with Severe Asthma: Scientific Insights from a Comparative Analysis of Open Clinical Data Sources during a Five-day Hackathon. Journal of Biomedical Informatics. 103325. PMID 31676459 DOI: 10.1016/J.Jbi.2019.103325 |
0.346 |
|
| 2019 |
Pfaff ER, Champion J, Bradford RL, Clark M, Xu H, Fecho K, Krishnamurthy A, Cox S, Chute CG, Overby Taylor C, Ahalt S. Fast Healthcare Interoperability Resources (FHIR) as a Meta Model to Integrate Common Data Models: Development of a Tool and Quantitative Validation Study. Jmir Medical Informatics. 7: e15199. PMID 31621639 DOI: 10.2196/15199 |
0.378 |
|
| 2019 |
Taylor CO, Lemke KW, Richards TM, Roe KD, He T, Arruda-Olson A, Carrell D, Denny JC, Hripcsak G, Kiryluk K, Kullo I, Larson EB, Peissig P, Walton NA, Wei-Qi W, ... ... Chute CG, et al. Comorbidity Characterization Among eMERGE Institutions: A Pilot Evaluation with the Johns Hopkins Adjusted Clinical Groups® System. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2019: 145-152. PMID 31258966 |
0.506 |
|
| 2018 |
Haendel MA, Chute CG, Robinson PN. Classification, Ontology, and Precision Medicine. The New England Journal of Medicine. 379: 1452-1462. PMID 30304648 DOI: 10.1056/Nejmra1615014 |
0.305 |
|
| 2018 |
Stanaway IB, Hall TO, Rosenthal EA, Palmer M, Naranbhai V, Knevel R, Namjou-Khales B, Carroll RJ, Kiryluk K, Gordon AS, Linder J, Howell KM, Mapes BM, Lin FTJ, Joo YY, ... ... Chute CG, et al. The eMERGE genotype set of 83,717 subjects imputed to ~40 million variants genome wide and association with the herpes zoster medical record phenotype. Genetic Epidemiology. PMID 30298529 DOI: 10.1002/Gepi.22167 |
0.547 |
|
| 2018 |
Mosley JD, Feng Q, Wells QS, Van Driest SL, Shaffer CM, Edwards TL, Bastarache L, Wei WQ, Davis LK, McCarty CA, Thompson W, Chute CG, Jarvik GP, Gordon AS, Palmer MR, et al. A study paradigm integrating prospective epidemiologic cohorts and electronic health records to identify disease biomarkers. Nature Communications. 9: 3522. PMID 30166544 DOI: 10.1038/S41467-018-05624-4 |
0.677 |
|
| 2018 |
Aronson S, Babb L, Ames D, Gibbs RA, Venner E, Connelly JJ, Marsolo K, Weng C, Williams MS, Hartzler AL, Liang WH, Ralston JD, Devine EB, Murphy S, Chute CG, et al. Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. Journal of the American Medical Informatics Association : Jamia. PMID 29860405 DOI: 10.1093/Jamia/Ocy051 |
0.345 |
|
| 2018 |
Chute CG. The rendering of human phenotype and rare diseases in ICD-11. Journal of Inherited Metabolic Disease. PMID 29600497 DOI: 10.1007/S10545-018-0172-5 |
0.311 |
|
| 2017 |
Schulz S, Rodrigues JM, Rector A, Chute CG. Interface Terminologies, Reference Terminologies and Aggregation Terminologies: A Strategy for Better Integration. Studies in Health Technology and Informatics. 245: 940-944. PMID 29295238 DOI: 10.3233/978-1-61499-830-3-940 |
0.353 |
|
| 2017 |
Chute CG, Huff SM. The Pluripotent Rendering of Clinical Data for Precision Medicine. Studies in Health Technology and Informatics. 245: 337-340. PMID 29295111 DOI: 10.3233/978-1-61499-830-3-337 |
0.335 |
|
| 2017 |
Sharma DK, Solbrig HR, Tao C, Weng C, Chute CG, Jiang G. Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies. Journal of Biomedical Semantics. 8: 19. PMID 28583204 DOI: 10.1186/S13326-017-0130-4 |
0.357 |
|
| 2017 |
Mosley JD, Shoemaker MB, Wells QS, Darbar D, Shaffer CM, Edwards TL, Bastarache L, McCarty CA, Thompson W, Chute CG, Jarvik GP, Crosslin DR, Larson EB, Kullo IJ, Pacheco JA, et al. Investigating the Genetic Architecture of the PR Interval Using Clinical Phenotypes. Circulation. Cardiovascular Genetics. 10. PMID 28416512 DOI: 10.1161/Circgenetics.116.001482 |
0.311 |
|
| 2017 |
Dumitrescu L, Ritchie MD, Denny JC, El Rouby NM, McDonough CW, Bradford Y, Ramirez AH, Bielinski SJ, Basford MA, Chai HS, Peissig P, Carrell D, Pathak J, Rasmussen LV, Wang X, ... ... Chute CG, et al. Genome-wide study of resistant hypertension identified from electronic health records. Plos One. 12: e0171745. PMID 28222112 DOI: 10.1371/Journal.Pone.0171745 |
0.497 |
|
| 2017 |
Heit JA, Armasu SM, McCauley BM, Kullo IJ, Sicotte H, Pathak J, Chute CG, Gottesman O, Bottinger EP, Denny JC, Roden DM, Li R, Ritchie MD, de Andrade M. Identification of unique venous thromboembolism-susceptibility variants in African-Americans. Thrombosis and Haemostasis. PMID 28203683 DOI: 10.1160/Th16-08-0652 |
0.526 |
|
| 2016 |
Hong N, Pathak J, Chute CG, Jiang G. Developing a modular architecture for creation of rule-based clinical diagnostic criteria. Biodata Mining. 9: 33. PMID 27785153 DOI: 10.1186/S13040-016-0113-5 |
0.33 |
|
| 2016 |
Mosley JD, Van Driest SL, Wells QS, Shaffer CM, Edwards TL, Bastarache L, McCarty CA, Thompson W, Chute CG, Jarvik GP, Crosslin DR, Larson EB, Kullo IJ, Pacheco JA, Peissig PL, et al. Defining a Contemporary Ischemic Heart Disease Genetic Risk Profile using Historical Data. Circulation. Cardiovascular Genetics. PMID 27780847 DOI: 10.1161/Circgenetics.116.001530 |
0.485 |
|
| 2016 |
Rasmussen LV, Overby CL, Connolly J, Chute CG, Denny JC, Freimuth R, Hartzler AL, Holm IA, Manzi S, Pathak J, Peissig PL, Smith M, Williams MS, Shirts BH, Stoffel EM, et al. Practical considerations for implementing genomic information resources. Experiences from eMERGE and CSER. Applied Clinical Informatics. 7: 870-882. PMID 27652374 DOI: 10.4338/Aci-2016-04-Ra-0060 |
0.508 |
|
| 2016 |
Jiang G, Kiefer RC, Rasmussen LV, Solbrig HR, Mo H, Pacheco JA, Xu J, Montague E, Thompson WK, Denny JC, Chute CG, Pathak J. Developing a Data Element Repository to Support EHR-driven Phenotype Algorithm Authoring and Execution. Journal of Biomedical Informatics. PMID 27392645 DOI: 10.1016/J.Jbi.2016.07.008 |
0.55 |
|
| 2016 |
Wagholikar KB, Mandel JC, Klann JG, Wattanasin N, Mendis M, Chute CG, Mandl KD, Murphy SN. SMART-on-FHIR implemented over i2b2. Journal of the American Medical Informatics Association : Jamia. PMID 27274012 DOI: 10.1093/Jamia/Ocw079 |
0.301 |
|
| 2016 |
Jiang G, Evans J, Endle CM, Solbrig HR, Chute CG. Using Semantic Web technologies for the generation of domain-specific templates to support clinical study metadata standards. Journal of Biomedical Semantics. 7: 10. PMID 26949508 DOI: 10.1186/S13326-016-0053-5 |
0.323 |
|
| 2016 |
Bush WS, Crosslin DR, Obeng AO, Wallace J, Almoguera B, Basford MA, Bielinski SJ, Carrell DS, Connolly JJ, Crawford D, Doheny KF, Gallego CJ, Gordon AS, Keating B, Kirby J, ... ... Chute CG, et al. Genetic Variation among 82 Pharmacogenes: the PGRN-Seq data from the eMERGE Network. Clinical Pharmacology and Therapeutics. PMID 26857349 DOI: 10.1002/Cpt.350 |
0.543 |
|
| 2015 |
Zhu Q, Liu H, Chute CG, Ferber M. EHR based Genetic Testing Knowledge Base (iGTKB) Development. Bmc Medical Informatics and Decision Making. 15: S3. PMID 26606281 DOI: 10.1186/1472-6947-15-S4-S3 |
0.316 |
|
| 2015 |
Herr TM, Bielinski SJ, Bottinger E, Brautbar A, Brilliant M, Chute CG, Cobb BL, Denny JC, Hakonarson H, Hartzler AL, Hripcsak G, Kannry J, Kohane IS, Kullo IJ, Lin S, et al. Practical considerations in genomic decision support: The eMERGE experience. Journal of Pathology Informatics. 6: 50. PMID 26605115 DOI: 10.4103/2153-3539.165999 |
0.497 |
|
| 2015 |
Oniki TA, Zhuo N, Beebe CE, Liu H, Coyle JF, Parker CG, Solbrig HR, Marchant K, Kaggal VC, Chute CG, Huff SM. Clinical element models in the SHARPn consortium. Journal of the American Medical Informatics Association : Jamia. PMID 26568604 DOI: 10.1093/Jamia/Ocv134 |
0.329 |
|
| 2015 |
Herr TM, Bielinski SJ, Bottinger E, Brautbar A, Brilliant M, Chute CG, Denny J, Freimuth RR, Hartzler A, Kannry J, Kohane IS, Kullo IJ, Lin S, Pathak J, Peissig P, et al. A conceptual model for translating omic data into clinical action. Journal of Pathology Informatics. 6: 46. PMID 26430534 DOI: 10.4103/2153-3539.163985 |
0.548 |
|
| 2015 |
Mo H, Thompson WK, Rasmussen LV, Pacheco JA, Jiang G, Kiefer R, Zhu Q, Xu J, Montague E, Carrell DS, Lingren T, Mentch FD, Ni Y, Wehbe FH, Peissig PL, ... ... Chute CG, et al. Desiderata for computable representations of electronic health records-driven phenotype algorithms. Journal of the American Medical Informatics Association : Jamia. PMID 26342218 DOI: 10.1093/Jamia/Ocv112 |
0.53 |
|
| 2015 |
Jiang G, Solbrig HR, Kiefer R, Rasmussen LV, Mo H, Speltz P, Thompson WK, Denny JC, Chute CG, Pathak J. A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. Studies in Health Technology and Informatics. 216: 1098. PMID 26262397 DOI: 10.3233/978-1-61499-564-7-1098 |
0.51 |
|
| 2015 |
Jiang G, Solbrig HR, Pathak J, Chute CG. Developing a Standards-Based Information Model for Representing Computable Diagnostic Criteria: A Feasibility Study of the NQF Quality Data Model. Studies in Health Technology and Informatics. 216: 1097. PMID 26262396 DOI: 10.3233/978-1-61499-564-7-1097 |
0.316 |
|
| 2015 |
Hong N, Jiang G, Pathak J, Chute CG. A Pilot Study on Modeling of Diagnostic Criteria Using OWL and SWRL. Studies in Health Technology and Informatics. 216: 1093. PMID 26262392 DOI: 10.3233/978-1-61499-564-7-1093 |
0.315 |
|
| 2015 |
Mosley JD, Shaffer CM, Van Driest SL, Weeke PE, Wells QS, Karnes JH, Velez Edwards DR, Wei WQ, Teixeira PL, Bastarache L, Crawford DC, Li R, Manolio TA, Bottinger EP, McCarty CA, ... ... Chute CG, et al. A genome-wide association study identifies variants in KCNIP4 associated with ACE inhibitor-induced cough. The Pharmacogenomics Journal. PMID 26169577 DOI: 10.1038/Tpj.2015.51 |
0.711 |
|
| 2015 |
Shirts BH, Salama JS, Aronson SJ, Chung WK, Gray SW, Hindorff LA, Jarvik GP, Plon SE, Stoffel EM, Tarczy-Hornoch PZ, Van Allen EM, Weck KE, Chute CG, Freimuth RR, Grundmeier RW, et al. CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. Journal of the American Medical Informatics Association : Jamia. PMID 26142422 DOI: 10.1093/Jamia/Ocv065 |
0.33 |
|
| 2015 |
Richesson RL, Chute CG. Health information technology data standards get down to business: maturation within domains and the emergence of interoperability. Journal of the American Medical Informatics Association : Jamia. 22: 492-4. PMID 25981416 DOI: 10.1093/Jamia/Ocv039 |
0.356 |
|
| 2015 |
Wang L, Liu H, Chute CG, Zhu Q. Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. Biodata Mining. 8: 9. PMID 25729430 DOI: 10.1186/S13040-015-0042-8 |
0.325 |
|
| 2015 |
Legaz-García Mdel C, Menárguez-Tortosa M, Fernández-Breis JT, Chute CG, Tao C. Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes. Journal of the American Medical Informatics Association : Jamia. 22: 536-44. PMID 25670753 DOI: 10.1093/Jamia/Ocu027 |
0.341 |
|
| 2015 |
Jiang G, Evans J, Oniki TA, Coyle JF, Bain L, Huff SM, Kush RD, Chute CG. Harmonization of detailed clinical models with clinical study data standards. Methods of Information in Medicine. 54: 65-74. PMID 25426730 DOI: 10.3414/Me13-02-0019 |
0.329 |
|
| 2014 |
Overby CL, Rasmussen LV, Hartzler A, Connolly JJ, Peterson JF, Hedberg RE, Freimuth RR, Shirts BH, Denny JC, Larson EB, Chute CG, Jarvik GP, Ralston JD, Shuldiner AR, Starren J, et al. A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2014: 944-53. PMID 25954402 |
0.487 |
|
| 2014 |
Malinowski JR, Denny JC, Bielinski SJ, Basford MA, Bradford Y, Peissig PL, Carrell D, Crosslin DR, Pathak J, Rasmussen L, Pacheco J, Kho A, Newton KM, Li R, Kullo IJ, ... Chute CG, et al. Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network. Plos One. 9: e111301. PMID 25436638 DOI: 10.1371/Journal.Pone.0111301 |
0.517 |
|
| 2014 |
Cronin RM, Field JR, Bradford Y, Shaffer CM, Carroll RJ, Mosley JD, Bastarache L, Edwards TL, Hebbring SJ, Lin S, Hindorff LA, Crane PK, Pendergrass SA, Ritchie MD, Crawford DC, ... ... Chute CG, et al. Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index. Frontiers in Genetics. 5: 250. PMID 25177340 DOI: 10.3389/Fgene.2014.00250 |
0.511 |
|
| 2014 |
Zhang Y, Tao C, Jiang G, Nair AA, Su J, Chute CG, Liu H. Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network. Journal of Biomedical Semantics. 5: 33. PMID 25170419 DOI: 10.1186/2041-1480-5-33 |
0.307 |
|
| 2014 |
Kullo IJ, Shameer K, Jouni H, Lesnick TG, Pathak J, Chute CG, de Andrade M. The ATXN2-SH2B3 locus is associated with peripheral arterial disease: an electronic medical record-based genome-wide association study. Frontiers in Genetics. 5: 166. PMID 25009551 DOI: 10.3389/Fgene.2014.00166 |
0.325 |
|
| 2014 |
Rasmussen-Torvik LJ, Stallings SC, Gordon AS, Almoguera B, Basford MA, Bielinski SJ, Brautbar A, Brilliant MH, Carrell DS, Connolly JJ, Crosslin DR, Doheny KF, Gallego CJ, Gottesman O, Kim DS, ... ... Chute CG, et al. Design and anticipated outcomes of the eMERGE-PGx project: a multicenter pilot for preemptive pharmacogenomics in electronic health record systems. Clinical Pharmacology and Therapeutics. 96: 482-9. PMID 24960519 DOI: 10.1038/Clpt.2014.137 |
0.557 |
|
| 2014 |
Chute CG. Invited commentary: Observational research in the age of the electronic health record. American Journal of Epidemiology. 179: 759-61. PMID 24488512 DOI: 10.1093/Aje/Kwt443 |
0.348 |
|
| 2014 |
Hripcsak G, Bloomrosen M, FlatelyBrennan P, Chute CG, Cimino J, Detmer DE, Edmunds M, Embi PJ, Goldstein MM, Hammond WE, Keenan GM, Labkoff S, Murphy S, Safran C, Speedie S, et al. Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting. Journal of the American Medical Informatics Association : Jamia. 21: 204-11. PMID 24169275 DOI: 10.1136/Amiajnl-2013-002117 |
0.316 |
|
| 2014 |
Shameer K, Denny JC, Ding K, Jouni H, Crosslin DR, de Andrade M, Chute CG, Peissig P, Pacheco JA, Li R, Bastarache L, Kho AN, Ritchie MD, Masys DR, Chisholm RL, et al. A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects. Human Genetics. 133: 95-109. PMID 24026423 DOI: 10.1007/S00439-013-1355-7 |
0.521 |
|
| 2013 |
Denny JC, Bastarache L, Ritchie MD, Carroll RJ, Zink R, Mosley JD, Field JR, Pulley JM, Ramirez AH, Bowton E, Basford MA, Carrell DS, Peissig PL, Kho AN, Pacheco JA, ... ... Chute CG, et al. Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data. Nature Biotechnology. 31: 1102-10. PMID 24270849 DOI: 10.1038/Nbt.2749 |
0.554 |
|
| 2013 |
Pathak J, Bailey KR, Beebe CE, Bethard S, Carrell DC, Chen PJ, Dligach D, Endle CM, Hart LA, Haug PJ, Huff SM, Kaggal VC, Li D, Liu H, Marchant K, ... ... Chute CG, et al. Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. Journal of the American Medical Informatics Association : Jamia. 20: e341-8. PMID 24190931 DOI: 10.1136/Amiajnl-2013-001939 |
0.391 |
|
| 2013 |
Chute CG, Ullman-Cullere M, Wood GM, Lin SM, He M, Pathak J. Some experiences and opportunities for big data in translational research. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 15: 802-9. PMID 24008998 DOI: 10.1038/Gim.2013.121 |
0.394 |
|
| 2013 |
Tao C, Song D, Sharma D, Chute CG. Semantator: semantic annotator for converting biomedical text to linked data. Journal of Biomedical Informatics. 46: 882-93. PMID 23867104 DOI: 10.1016/J.Jbi.2013.07.003 |
0.331 |
|
| 2013 |
Gottesman O, Kuivaniemi H, Tromp G, Faucett WA, Li R, Manolio TA, Sanderson SC, Kannry J, Zinberg R, Basford MA, Brilliant M, Carey DJ, Chisholm RL, Chute CG, Connolly JJ, et al. The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 15: 761-71. PMID 23743551 DOI: 10.1038/Gim.2013.72 |
0.532 |
|
| 2013 |
Jiang G, Solbrig HR, Chute CG. Using Semantic Web technology to support icd-11 textual definitions authoring. Journal of Biomedical Semantics. 4: 11. PMID 23601451 DOI: 10.1186/2041-1480-4-11 |
0.35 |
|
| 2013 |
Chute CG, Kohane IS. Genomic medicine, health information technology, and patient care. Jama. 309: 1467-8. PMID 23571583 DOI: 10.1001/Jama.2013.1414 |
0.308 |
|
| 2013 |
Newton KM, Peissig PL, Kho AN, Bielinski SJ, Berg RL, Choudhary V, Basford M, Chute CG, Kullo IJ, Li R, Pacheco JA, Rasmussen LV, Spangler L, Denny JC. Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network. Journal of the American Medical Informatics Association : Jamia. 20: e147-54. PMID 23531748 DOI: 10.1136/Amiajnl-2012-000896 |
0.543 |
|
| 2013 |
Ritchie MD, Denny JC, Zuvich RL, Crawford DC, Schildcrout JS, Bastarache L, Ramirez AH, Mosley JD, Pulley JM, Basford MA, Bradford Y, Rasmussen LV, Pathak J, Chute CG, Kullo IJ, et al. Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk. Circulation. 127: 1377-85. PMID 23463857 DOI: 10.1161/Circulationaha.112.000604 |
0.459 |
|
| 2013 |
Wu ST, Kaggal VC, Dligach D, Masanz JJ, Chen P, Becker L, Chapman WW, Savova GK, Liu H, Chute CG. A common type system for clinical natural language processing. Journal of Biomedical Semantics. 4: 1. PMID 23286462 DOI: 10.1186/2041-1480-4-1 |
0.37 |
|
| 2013 |
Tao C, Jiang G, Oniki TA, Freimuth RR, Zhu Q, Sharma D, Pathak J, Huff SM, Chute CG. A semantic-web oriented representation of the clinical element model for secondary use of electronic health records data. Journal of the American Medical Informatics Association : Jamia. 20: 554-62. PMID 23268487 DOI: 10.1136/Amiajnl-2012-001326 |
0.376 |
|
| 2013 |
Zhu Q, Freimuth RR, Lian Z, Bauer S, Pathak J, Tao C, Durski MJ, Chute CG. Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: a case study. Journal of Biomedical Informatics. 46: 286-93. PMID 23201637 DOI: 10.1016/J.Jbi.2012.11.004 |
0.363 |
|
| 2013 |
Tao C, Pathak J, Solbrig HR, Wei WQ, Chute CG. Terminology representation guidelines for biomedical ontologies in the semantic web notations. Journal of Biomedical Informatics. 46: 128-38. PMID 23026232 DOI: 10.1016/J.Jbi.2012.09.003 |
0.667 |
|
| 2013 |
Wei WQ, Leibson CL, Ransom JE, Kho AN, Chute CG. The absence of longitudinal data limits the accuracy of high-throughput clinical phenotyping for identifying type 2 diabetes mellitus subjects. International Journal of Medical Informatics. 82: 239-47. PMID 22762862 DOI: 10.1016/J.Ijmedinf.2012.05.015 |
0.651 |
|
| 2013 |
Heit JA, de Andrade M, Armasu SM, Kullo IJ, Pathak J, Chute CG, Gottesman O, Bottinger EP, Denny JC, Roden DM, Li R, Ritchie MD. Genome-Wide Association Study (GWAS) Of Venous Thromboembolism (VTE) In African-Americans From The Electronic Medical Records & Genomics (eMERGE) Networkm Blood. 122: 458-458. DOI: 10.1182/Blood.V122.21.458.458 |
0.526 |
|
| 2013 |
Giovannucci E, Rimm EB, Colditz GA, Stampfer MJ, Ascherio A, Chute C, Willett WC. Erratum: A Prospective Study of Dietary Fat and Risk of Prostate Cancer (Journal of the National Cancer Institute (1993) 85: 19 (1571-1579)) Journal of the National Cancer Institute. 105. DOI: 10.1093/Jnci/Djt147 |
0.342 |
|
| 2012 |
Pathak J, Kiefer RC, Bielinski SJ, Chute CG. Applying semantic web technologies for phenome-wide scan using an electronic health record linked Biobank. Journal of Biomedical Semantics. 3: 10. PMID 23244446 DOI: 10.1186/2041-1480-3-10 |
0.368 |
|
| 2012 |
Zhu Q, Tao C, Ding Y, Chute CG. Time-related patient data retrieval for the case studies from the pharmacogenomics research network. Journal of Medical Systems. 36: S37-42. PMID 23076712 DOI: 10.1007/S10916-012-9888-1 |
0.326 |
|
| 2012 |
Jiang G, Solbrig HR, Chute CG. Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups. Journal of the American Medical Informatics Association : Jamia. 19: e129-36. PMID 22511016 DOI: 10.1136/Amiajnl-2011-000739 |
0.32 |
|
| 2012 |
Wu ST, Liu H, Li D, Tao C, Musen MA, Chute CG, Shah NH. Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. Journal of the American Medical Informatics Association : Jamia. 19: e149-56. PMID 22493050 DOI: 10.1136/Amiajnl-2011-000744 |
0.313 |
|
| 2012 |
Rea S, Pathak J, Savova G, Oniki TA, Westberg L, Beebe CE, Tao C, Parker CG, Haug PJ, Huff SM, Chute CG. Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: the SHARPn project. Journal of Biomedical Informatics. 45: 763-71. PMID 22326800 DOI: 10.1016/J.Jbi.2012.01.009 |
0.36 |
|
| 2012 |
Wei WQ, Leibson CL, Ransom JE, Kho AN, Caraballo PJ, Chai HS, Yawn BP, Pacheco JA, Chute CG. Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus. Journal of the American Medical Informatics Association : Jamia. 19: 219-24. PMID 22249968 DOI: 10.1136/Amiajnl-2011-000597 |
0.651 |
|
| 2012 |
Kho AN, Hayes MG, Rasmussen-Torvik L, Pacheco JA, Thompson WK, Armstrong LL, Denny JC, Peissig PL, Miller AW, Wei WQ, Bielinski SJ, Chute CG, Leibson CL, Jarvik GP, Crosslin DR, et al. Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. Journal of the American Medical Informatics Association : Jamia. 19: 212-8. PMID 22101970 DOI: 10.1136/Amiajnl-2011-000439 |
0.731 |
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| 2012 |
Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B. The National Center for Biomedical Ontology. Journal of the American Medical Informatics Association : Jamia. 19: 190-5. PMID 22081220 DOI: 10.1136/Amiajnl-2011-000523 |
0.344 |
|
| 2011 |
Tao C, Jiang G, Wei W, Solbrig HR, Chute CG. Towards Semantic-Web Based Representation and Harmonization of Standard Meta-data Models for Clinical Studies. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2011: 59-63. PMID 22211181 |
0.479 |
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| 2011 |
Conway M, Berg RL, Carrell D, Denny JC, Kho AN, Kullo IJ, Linneman JG, Pacheco JA, Peissig P, Rasmussen L, Weston N, Chute CG, Pathak J. Analyzing the heterogeneity and complexity of Electronic Health Record oriented phenotyping algorithms. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2011: 274-83. PMID 22195079 |
0.476 |
|
| 2011 |
Denny JC, Crawford DC, Ritchie MD, Bielinski SJ, Basford MA, Bradford Y, Chai HS, Bastarache L, Zuvich R, Peissig P, Carrell D, Ramirez AH, Pathak J, Wilke RA, Rasmussen L, ... ... Chute CG, et al. Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. American Journal of Human Genetics. 89: 529-42. PMID 21981779 DOI: 10.1016/J.Ajhg.2011.09.008 |
0.538 |
|
| 2011 |
Jiang G, Solbrig HR, Chute CG. Quality evaluation of cancer study Common Data Elements using the UMLS Semantic Network Journal of Biomedical Informatics. 44. PMID 21840422 DOI: 10.1016/J.Jbi.2011.08.001 |
0.309 |
|
| 2011 |
Kullo IJ, Ding K, Shameer K, McCarty CA, Jarvik GP, Denny JC, Ritchie MD, Ye Z, Crosslin DR, Chisholm RL, Manolio TA, Chute CG. Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate. American Journal of Human Genetics. 89: 131-8. PMID 21700265 DOI: 10.1016/J.Ajhg.2011.05.019 |
0.512 |
|
| 2011 |
Bielinski SJ, Chai HS, Pathak J, Talwalkar JA, Limburg PJ, Gullerud RE, Sicotte H, Klee EW, Ross JL, Kocher JP, Kullo IJ, Heit JA, Petersen GM, de Andrade M, Chute CG. Mayo Genome Consortia: a genotype-phenotype resource for genome-wide association studies with an application to the analysis of circulating bilirubin levels. Mayo Clinic Proceedings. 86: 606-14. PMID 21646302 DOI: 10.4065/Mcp.2011.0178 |
0.364 |
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| 2011 |
Pathak J, Wang J, Kashyap S, Basford M, Li R, Masys DR, Chute CG. Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. Journal of the American Medical Informatics Association : Jamia. 18: 376-86. PMID 21597104 DOI: 10.1136/Amiajnl-2010-000061 |
0.369 |
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| 2011 |
Kho AN, Pacheco JA, Peissig PL, Rasmussen L, Newton KM, Weston N, Crane PK, Pathak J, Chute CG, Bielinski SJ, Kullo IJ, Li R, Manolio TA, Chisholm RL, Denny JC. Electronic medical records for genetic research: results of the eMERGE consortium. Science Translational Medicine. 3: 79re1. PMID 21508311 DOI: 10.1126/Scitranslmed.3001807 |
0.57 |
|
| 2011 |
Pathak J, Chute CG. Further revamping VA's NDF-RT drug terminology for clinical research Journal of the American Medical Informatics Association. 18: 347-348. PMID 21415066 DOI: 10.1136/Amiajnl-2011-000161 |
0.301 |
|
| 2011 |
McCarty CA, Chisholm RL, Chute CG, Kullo IJ, Jarvik GP, Larson EB, Li R, Masys DR, Ritchie MD, Roden DM, Struewing JP, Wolf WA. The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies. Bmc Medical Genomics. 4: 13. PMID 21269473 DOI: 10.1186/1755-8794-4-13 |
0.319 |
|
| 2011 |
Liu K, Chapman WW, Savova G, Chute CG, Sioutos N, Crowley RS. Effectiveness of lexico-syntactic pattern matching for ontology enrichment with clinical documents Methods of Information in Medicine. 50: 397-407. PMID 21057720 DOI: 10.3414/Me10-01-0020 |
0.303 |
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| 2011 |
Pakhomov SV, Pedersen T, McInnes B, Melton GB, Ruggieri A, Chute CG. Towards a framework for developing semantic relatedness reference standards. Journal of Biomedical Informatics. 44: 251-65. PMID 21044697 DOI: 10.1016/J.Jbi.2010.10.004 |
0.352 |
|
| 2010 |
Wei WQ, Tao C, Jiang G, Chute CG. A high throughput semantic concept frequency based approach for patient identification: a case study using type 2 diabetes mellitus clinical notes. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 857-61. PMID 21347100 |
0.635 |
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| 2010 |
Tao C, Wei WQ, Solbrig HR, Savova G, Chute CG. CNTRO: A Semantic Web Ontology for Temporal Relation Inferencing in Clinical Narratives. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 787-91. PMID 21347086 |
0.644 |
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| 2010 |
Kullo IJ, Ding K, Jouni H, Smith CY, Chute CG. A genome-wide association study of red blood cell traits using the Electronic Medical Record Plos One. 5. PMID 20927387 DOI: 10.1371/Journal.Pone.0013011 |
0.363 |
|
| 2010 |
Kullo IJ, Fan J, Pathak J, Savova GK, Ali Z, Chute CG. Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. Journal of the American Medical Informatics Association : Jamia. 17: 568-74. PMID 20819866 DOI: 10.1136/Jamia.2010.004366 |
0.355 |
|
| 2010 |
Savova GK, Masanz JJ, Ogren PV, Zheng J, Sohn S, Kipper-Schuler KC, Chute CG. Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. Journal of the American Medical Informatics Association : Jamia. 17: 507-13. PMID 20819853 DOI: 10.1136/Jamia.2009.001560 |
0.336 |
|
| 2010 |
Schildcrout JS, Basford MA, Pulley JM, Masys DR, Roden DM, Wang D, Chute CG, Kullo IJ, Carrell D, Peissig P, Kho A, Denny JC. An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. Journal of Biomedical Informatics. 43: 914-23. PMID 20688191 DOI: 10.1016/J.Jbi.2010.07.011 |
0.525 |
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| 2010 |
Chute CG, Beck SA, Fisk TB, Mohr DN. The Enterprise Data Trust at Mayo Clinic: a semantically integrated warehouse of biomedical data. Journal of the American Medical Informatics Association : Jamia. 17: 131-5. PMID 20190054 DOI: 10.1136/Jamia.2009.002691 |
0.341 |
|
| 2010 |
Tao C, Solbrig HR, Sharma DK, Wei WQ, Savova GK, Chute CG. Time-oriented question answering from clinical narratives using semantic-web techniques Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6497: 241-256. DOI: 10.1007/978-3-642-17749-1_16 |
0.509 |
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| 2009 |
Tao C, Pathak J, Solbrig HR, Wei WQ, Chute CG. LexRDF Model: An RDF-based Unified Model for Heterogeneous Biomedical Ontologies. Ceur Workshop Proceedings. 521: 3. PMID 21804785 |
0.64 |
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| 2009 |
Bernstam EV, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Eichmann D, Athey BD, Scheuermann RH, et al. Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. Academic Medicine : Journal of the Association of American Medical Colleges. 84: 964-70. PMID 19550198 DOI: 10.1097/Acm.0B013E3181A8144D |
0.319 |
|
| 2009 |
Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research. 37: W170-3. PMID 19483092 DOI: 10.1093/nar/gkp440 |
0.337 |
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| 2009 |
Pathak J, Solbrig HR, Buntrock JD, Johnson TM, Chute CG. LexGrid: A Framework for Representing, Storing, and Querying Biomedical Terminologies from Simple to Sublime Journal of the American Medical Informatics Association. 16: 305-315. PMID 19261933 DOI: 10.1197/Jamia.M3006 |
0.353 |
|
| 2009 |
Sim I, Chute CG, Lehmann H, Nagarajan R, Nahm M, Scheuermann RH. Keeping raw data in context. Science (New York, N.Y.). 323: 713. PMID 19197039 DOI: 10.1126/Science.323.5915.713A |
0.316 |
|
| 2009 |
Tao C, Pathak J, Solbrig HR, Chute CG. LexOWL: A Bridge from LexGrid to OWL Nature Precedings. 4: 1-1. DOI: 10.1038/Npre.2009.3468.1 |
0.307 |
|
| 2008 |
Chute CG. Biosurveillance, Classification, and Semantic Health Technologies Journal of the American Medical Informatics Association. 15: 172-173. PMID 18396506 DOI: 10.1197/Jamia.M2693 |
0.306 |
|
| 2008 |
Savova GK, Coden AR, Sominsky IL, Johnson R, Ogren PV, de Groen PC, Chute CG. Word sense disambiguation across two domains: biomedical literature and clinical notes. Journal of Biomedical Informatics. 41: 1088-100. PMID 18375190 DOI: 10.1016/J.Jbi.2008.02.003 |
0.31 |
|
| 2008 |
Savova GK, Ogren PV, Duffy PH, Buntrock JD, Chute CG. Mayo clinic NLP system for patient smoking status identification. Journal of the American Medical Informatics Association : Jamia. 15: 25-8. PMID 17947622 DOI: 10.1197/Jamia.M2437 |
0.328 |
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| 2006 |
Rubin DL, Lewis SE, Mungall CJ, Misra S, Westerfield M, Ashburner M, Sim I, Chute CG, Solbrig H, Storey MA, Smith B, Day-Richter J, Noy NF, Musen MA. National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. Omics : a Journal of Integrative Biology. 10: 185-98. PMID 16901225 DOI: 10.1089/Omi.2006.10.185 |
0.344 |
|
| 2006 |
Pakhomov SV, Coden A, Chute CG. Developing a corpus of clinical notes manually annotated for part-of-speech. International Journal of Medical Informatics. 75: 418-29. PMID 16169769 DOI: 10.1016/J.Ijmedinf.2005.08.006 |
0.307 |
|
| 2005 |
Pakhomov SV, Buntrock J, Chute CG. Prospective recruitment of patients with congestive heart failure using an ad-hoc binary classifier. Journal of Biomedical Informatics. 38: 145-53. PMID 15797003 DOI: 10.1016/J.Jbi.2004.11.016 |
0.305 |
|
| 2004 |
Ruggieri AP, Pakhomov SV, Chute CG. A corpus driven approach applying the "frame semantic" method for modeling functional status terminology. Studies in Health Technology and Informatics. 107: 434-8. PMID 15360850 DOI: 10.3233/978-1-60750-949-3-434 |
0.319 |
|
| 2004 |
Tu SW, Musen MA, Shankar R, Campbell J, Hrabak K, McClay J, Huff SM, McClure R, Parker C, Rocha R, Abarbanel R, Beard N, Glasgow J, Mansfield G, Ram P, ... ... Chute CG, et al. Modeling guidelines for integration into clinical workflow. Studies in Health Technology and Informatics. 107: 174-8. PMID 15360798 DOI: 10.3233/978-1-60750-949-3-174 |
0.322 |
|
| 2001 |
Elkin PL, Brown SH, Chute CG. Guideline for health informatics: controlled health vocabularies--vocabulary structure and high-level indicators. Studies in Health Technology and Informatics. 84: 191-5. PMID 11604731 DOI: 10.3233/978-1-60750-928-8-191 |
0.306 |
|
| 2000 |
Harris MR, Graves JR, Solbrig HR, Elkin PL, Chute CG. Embedded structures and representation of nursing knowledge Journal of the American Medical Informatics Association. 7: 539-549. PMID 11062227 DOI: 10.1136/Jamia.2000.0070539 |
0.311 |
|
| 1998 |
Elkin PL, Tuttle M, Keck K, Campbell K, Atkin G, Chute CG. The role of compositionality in standardized problem list generation Medinfo. Medinfo. 9: 660-664. PMID 10384537 DOI: 10.3233/978-1-60750-896-0-660 |
0.305 |
|
| 1998 |
Campbell KE, Cohn SP, Chute CG, Shortliffe EH, Rennels G. Scalable methodologies for distributed development of logic-based convergent medical terminology Methods of Information in Medicine. 37: 426-439. PMID 9865041 DOI: 10.1055/S-0038-1634554 |
0.307 |
|
| 1998 |
Chute CG, Cohn SP, Campbell JR. A framework for comprehensive health terminology systems in the United States: Development guidelines, criteria for selection, and public policy implications Journal of the American Medical Informatics Association. 5: 503-510. PMID 9824798 DOI: 10.1136/Jamia.1998.0050503 |
0.34 |
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| 1998 |
Olson NE, Keck KD, Cole WG, Erlbaum MS, Sherertz DD, Chute CG, Elkin PL, Atkin GE, Kaihoi BH, Safran C, Rind D, Law V, Tuttle MS. Metaphrase: An Aid to the Clinical Conceptualization and Formalization of Patient Problems in Healthcare Enterprises Methods of Information in Medicine. 37: 373-383. DOI: 10.1055/S-0038-1634560 |
0.301 |
|
| 1996 |
Chute CG, Cohn SP, Campbell KE, Oliver DE, Campbell JR. The content coverage of clinical classifications. For The Computer-Based Patient Record Institute's Work Group on Codes & Structures Journal of the American Medical Informatics Association : Jamia. 3: 224-233. PMID 8723613 DOI: 10.1136/Jamia.1996.96310636 |
0.345 |
|
| 1995 |
Chute CG, Yang Y. An overview of statistical methods for the classification and retrieval of patient events Methods of Information in Medicine. 34: 104-110. PMID 9082119 DOI: 10.1055/S-0038-1634570 |
0.318 |
|
| 1995 |
Safran C, Chute CG. Exploration and exploitation of clinical databases International Journal of Bio-Medical Computing. 39: 151-156. PMID 7601529 DOI: 10.1016/0020-7101(94)01094-H |
0.37 |
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| 1994 |
Chute CG, Cesnik B, van Bemmel JH. Medical data and knowledge management by integrated medical workstations: summary and recommendations International Journal of Bio-Medical Computing. 34: 175-183. PMID 8125630 DOI: 10.1016/0020-7101(94)90020-5 |
0.361 |
|
| 1994 |
Giovannucci E, Rimm EB, Chute CG, Kawachi I, Colditz GA, Stampfer MJ, Willett WC. Obesity and benign prostatic hyperplasia American Journal of Epidemiology. 140: 989-1002. PMID 7527182 DOI: 10.1093/Oxfordjournals.Aje.A117206 |
0.353 |
|
| 1994 |
Yang Y, Chute CG. An Example-Based Mapping Method for Text Categorization and Retrieval Acm Transactions On Information Systems (Tois). 12: 252-277. DOI: 10.1145/183422.183424 |
0.321 |
|
| 1992 |
Chute CG. Clinical data retrieval and analysis: I've seen a case like that before Annals of the New York Academy of Sciences. 670: 133-140. PMID 1309082 DOI: 10.1111/J.1749-6632.1992.Tb26083.X |
0.312 |
|
| 1991 |
Rimm EB, Stampfer MJ, Colditz GA, Chute CG, Litin LB, Willett WC. Validity of self-reported waist and hip circumferences in men and women. Epidemiology (Cambridge, Mass.). 1: 466-73. PMID 2090285 DOI: 10.1097/00001648-199011000-00009 |
0.344 |
|
| 1991 |
Chute CG, Willett WC, Colditz GA, Stampfer MJ, Rosner B, Speizer FE. A prospective study of reproductive history and exogenous estrogens on the risk of colorectal cancer in women. Epidemiology (Cambridge, Mass.). 2: 201-7. PMID 2054402 DOI: 10.1097/00001648-199105000-00007 |
0.5 |
|
| 1991 |
Chute CG, Willett WC, Colditz GA, Stampfer MJ, Baron JA, Rosner B, Speizer FE. A prospective study of body mass, height, and smoking on the risk of colorectal cancer in women. Cancer Causes & Control : Ccc. 2: 117-24. PMID 1873436 DOI: 10.1007/Bf00053131 |
0.496 |
|
| 1991 |
Yang Y, Chute CG. Hierarchical distribution analysis for computer-assisted classifications of patient records Medical Decision Making. 11. PMID 1770856 DOI: 10.1177/0272989X9101104S18 |
0.307 |
|
| 1991 |
Chute CG. The Classification of Medical Events Using Latent Semantic Analysis Advances in Classification Research Online. 2. DOI: 10.7152/Acro.V2I1.12546 |
0.331 |
|
| 1991 |
Chute C, Willett W, Colditz G, Stampfer M, Rosner B, Speizer F. 91183993 A prospective study of reproductive history and exogenous estrogens on the risk of colorectal cancer in women Maturitas. 14: 85-86. DOI: 10.1016/0378-5122(91)90177-R |
0.485 |
|
| 1990 |
Hunter DJ, Morris JS, Chute CG, Kushner E, Colditz GA, Stampfer MJ, Speizer FE, Willett WC. Predictors of selenium concentration in human toenails. American Journal of Epidemiology. 132: 114-22. PMID 2356804 DOI: 10.1093/Oxfordjournals.Aje.A115623 |
0.498 |
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