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Deepak Bandyopadhyay, Ph.D. - Publications

Affiliations: 
2006 University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Computer Science, Molecular Biology
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Coma I, Bandyopadhyay D, Diez E, Ruiz EA, de Los Frailes MT, Colmenarejo G. Mining Natural-Products Screening Data for Target-Class Chemical Motifs. Journal of Biomolecular Screening. 19: 749-757. PMID 24518065 DOI: 10.1177/1087057114521463  0.305
2010 Bandyopadhyay D, Huan J, Liu J, Prins J, Snoeyink J, Wang W, Tropsha A. Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 14: 1137-43. PMID 20570776 DOI: 10.1109/TITB.2010.2053550  0.634
2009 Bandyopadhyay D, Huan J, Prins J, Snoeyink J, Wang W, Tropsha A. Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. Journal of Computer-Aided Molecular Design. 23: 785-97. PMID 19548090 DOI: 10.1007/S10822-009-9277-0  0.667
2009 Bandyopadhyay D, Huan J, Prins J, Snoeyink J, Wang W, Tropsha A. Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. Journal of Computer-Aided Molecular Design. 23: 773-84. PMID 19543979 DOI: 10.1007/S10822-009-9273-4  0.682
2008 Bandyopadhyay D, Agrafiotis DK. A self-organizing algorithm for molecular alignment and pharmacophore development. Journal of Computational Chemistry. 29: 965-82. PMID 17999384 DOI: 10.1002/Jcc.20854  0.337
2008 Bandyopadhyay D, Huan J, Liu J, Prins J, Snoeyink J, Wang W, Tropsha A. Functional neighbors: Inferring relationships between non-homologous protein families using family-specific packing motifs Proceedings - Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2008. 199-206. DOI: 10.1109/BIBM.2008.84  0.634
2007 Bandyopadhyay D, Snoeyink J. Almost-Delaunay simplices: Robust neighbor relations for imprecise 3D points using CGAL Computational Geometry: Theory and Applications. 38: 4-15. DOI: 10.1016/J.Comgeo.2006.11.003  0.556
2006 Huan J, Bandyopadhyay D, Prins J, Snoeyink J, Tropsha A, Wang W. Distance-based identification of structure motifs in proteins using constrained frequent subgraph mining. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 227-38. PMID 17369641  0.63
2006 Bandyopadhyay D, Huan J, Liu J, Prins J, Snoeyink J, Wang W, Tropsha A. Structure-based function inference using protein family-specific fingerprints. Protein Science : a Publication of the Protein Society. 15: 1537-43. PMID 16731985 DOI: 10.1110/Ps.062189906  0.659
2005 Huan J, Bandyopadhyay D, Wang W, Snoeyink J, Prins J, Tropsha A. Comparing graph representations of protein structure for mining family-specific residue-based packing motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 657-71. PMID 16108709 DOI: 10.1089/Cmb.2005.12.657  0.637
2004 Huan J, Wang W, Bandyopadhyay D, Snoeyink J, Prins J, Tropsha A. Mining protein family specific residue packing patterns from protein structure graphs Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 8: 308-315.  0.641
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