| Year |
Citation |
Score |
| 2021 |
Ge T, Jiang H, Tan EH, Johnson SB, Larkin R, Charkowski AO, Secor G, Hao J. Pangenomic Analysis of Strains Related to the Outbreak of Blackleg and Soft Rot of Potato in USA. Plant Disease. PMID 34213964 DOI: 10.1094/PDIS-03-21-0587-RE |
0.331 |
|
| 2021 |
Joshi JR, Khazanov N, Charkowski A, Faigenboim A, Senderowitz H, Yedidia I. Interkingdom Signaling Interference: The Effect of Plant-Derived Small Molecules on Quorum Sensing in Plant-Pathogenic Bacteria. Annual Review of Phytopathology. PMID 33951403 DOI: 10.1146/annurev-phyto-020620-095740 |
0.316 |
|
| 2020 |
Taylor D, Charkowski AO, Zeng Y. Laboratory assays used to rank potato cultivar tolerance to blackleg showed that tuber vacuum infiltration results correlate with field observations. Plant Disease. PMID 32852253 DOI: 10.1094/Pdis-07-20-1485-Re |
0.342 |
|
| 2020 |
Joshi JR, Khazanov N, Khadka N, Charkowski AO, Burdman S, Carmi N, Yedidia I, Senderowitz H. Direct binding of salicylic acid to Pectobacterium N-acyl-homoserine lactone synthase. Acs Chemical Biology. PMID 32392032 DOI: 10.1021/Acschembio.0C00185 |
0.375 |
|
| 2019 |
Karim S, McNally RR, Nasaruddin AS, DeReeper A, Mauleon RP, Charkowski AO, Leach JE, Ben-Hur A, Triplett LR. Development of the Automated Primer Design Workflow Uniqprimer and Diagnostic Primers for the Broad-Host-Range Plant Pathogen . Plant Disease. PDIS10181819RE. PMID 31436473 DOI: 10.1094/Pdis-10-18-1819-Re |
0.395 |
|
| 2019 |
Babujee L, Witherell RA, Mikami K, Aiuchi D, Charkowski AO, Rakotondrafara AM. Optimization of an isothermal recombinase polymerase amplification method for real-time detection of Potato virus Y O and N types in potato. Journal of Virological Methods. PMID 30796947 DOI: 10.1016/J.Jviromet.2019.02.006 |
0.325 |
|
| 2019 |
Zeng Y, Fulladolsa AC, Houser A, Charkowski AO. Colorado Seed Potato Certification Data Analysis Shows Mosaic and Blackleg are Major Diseases of Seed Potato and Identifies Tolerant Potato Varieties. Plant Disease. 103: 192-199. PMID 30592697 DOI: 10.1094/Pdis-03-18-0484-Re |
0.321 |
|
| 2018 |
Couture JJ, Singh A, Charkowski AO, Groves RL, Gray SM, Bethke PC, Townsend PA. Integrating Spectroscopy with Potato Disease Management. Plant Disease. PDIS01180054RE. PMID 30145947 DOI: 10.1094/Pdis-01-18-0054-Re |
0.394 |
|
| 2018 |
Charkowski AO. The Changing Face of Bacterial Soft-Rot Diseases. Annual Review of Phytopathology. PMID 29958075 DOI: 10.1146/Annurev-Phyto-080417-045906 |
0.379 |
|
| 2017 |
Fulladolsa AC, LaPlant KE, Groves RL, Charkowski AO. Potato Plants Grown from Minitubers are Delayed in Maturity and Lower in Yield, but are not at a Higher Risk of Potato virus Y Infection than Plants Grown from Conventional Seed American Journal of Potato Research. 95: 45-53. DOI: 10.1007/S12230-017-9613-1 |
0.381 |
|
| 2017 |
Braun S, Gevens A, Charkowski A, Allen C, Jansky S. Potato Common Scab: a Review of the Causal Pathogens, Management Practices, Varietal Resistance Screening Methods, and Host Resistance American Journal of Potato Research. 94: 283-296. DOI: 10.1007/S12230-017-9575-3 |
0.314 |
|
| 2016 |
Wang Y, Charkowski AO, Zeng C, Zhu T, Wang H, Chen H. Phylogenetic and Morphological Identification of the Novel Pathogen of Rheum palmatum Leaf Spot in Gansu, China. Mycobiology. 44: 93-8. PMID 27433119 DOI: 10.5941/Myco.2016.44.2.93 |
0.387 |
|
| 2016 |
Sundin GW, Wang N, Charkowski AO, Castiblanco LF, Jia H, Zhao Y. Perspectives on the transition from bacterial phytopathogen genomics studies to applications enhancing disease management: from promise to practice. Phytopathology. PMID 27183301 DOI: 10.1094/Phyto-03-16-0117-Fi |
0.421 |
|
| 2015 |
Thomas-Sharma S, Abdurahman A, Ali S, Andrade-Piedra JL, Bao S, Charkowski AO, Crook D, Kadian M, Kromann P, Struik PC, Torrance L, Garrett KA, Forbes GA. Seed degeneration in potato: The need for an integrated seed health strategy to mitigate the problem in developing countries Plant Pathology. DOI: 10.1111/Ppa.12439 |
0.308 |
|
| 2015 |
Charkowski AO. Biology and control of Pectobacterium in potato American Journal of Potato Research. 92: 223-229. DOI: 10.1007/S12230-015-9447-7 |
0.478 |
|
| 2014 |
Ma B, Charkowski AO, Glasner JD, Perna NT. Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning. Bmc Genomics. 15: 508. PMID 24952641 DOI: 10.1186/1471-2164-15-508 |
0.479 |
|
| 2014 |
Mattupalli C, Spraker JE, Berthier E, Charkowski AO, Keller NP, Shepherd RW. A Microfluidic Assay for Identifying Differential Responses of Plant and Human Fungal Pathogens to Tobacco Phylloplanins Plant Health Progress. 15: 130-134. DOI: 10.1094/Php-Rs-14-0009 |
0.794 |
|
| 2014 |
Mattupalli C, Glasner JD, Charkowski AO. A draft genome sequence reveals the Helminthosporium solani arsenal for cell wall degradation American Journal of Potato Research. 91: 517-524. DOI: 10.1007/S12230-014-9382-Z |
0.797 |
|
| 2014 |
Charkowski AO, Lind J, Rubio-Salazar I. Genomics of plant-associated bacteria: The soft rot enterobacteriaceae Genomics of Plant-Associated Bacteria. 37-58. DOI: 10.1007/978-3-642-55378-3_2 |
0.482 |
|
| 2013 |
Frost KE, Groves RL, Charkowski AO. Integrated Control of Potato Pathogens Through Seed Potato Certification and Provision of Clean Seed Potatoes. Plant Disease. 97: 1268-1280. PMID 30722175 DOI: 10.1094/Pdis-05-13-0477-Fe |
0.328 |
|
| 2013 |
Hogan CS, Mole BM, Grant SR, Willis DK, Charkowski AO. The type III secreted effector DspE is required early in solanum tuberosum leaf infection by Pectobacterium carotovorum to cause cell death, and requires Wx(3-6)D/E motifs. Plos One. 8: e65534. PMID 23755246 DOI: 10.1371/Journal.Pone.0065534 |
0.803 |
|
| 2013 |
Kwan G, Charkowski AO, Barak JD. Salmonella enterica suppresses Pectobacterium carotovorum subsp. carotovorum population and soft rot progression by acidifying the microaerophilic environment. Mbio. 4: e00557-12. PMID 23404399 DOI: 10.1128/Mbio.00557-12 |
0.425 |
|
| 2013 |
Marquez-Villavicencio MdP, Weber B, Witherell RA, Willis DK, Charkowski AO. The P. c. subsp. carotovorum budAB operon affects bacterial modification of pH in tubers slices that are incubated anaerobically. Plos One. DOI: 10.1371/Journal.Pone.0022974.G003 |
0.335 |
|
| 2013 |
Mattupalli C, Genger RK, Charkowski AO. Evaluating Incidence of Helminthosporium solani and Colletotrichum coccodes on Asymptomatic Organic Potatoes and Screening Potato Lines for Resistance to Silver Scurf American Journal of Potato Research. 90: 369-377. DOI: 10.1007/S12230-013-9314-3 |
0.754 |
|
| 2012 |
Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, López Solanilla E, Low D, Moleleki L, Pirhonen M, Pitman A, Perna N, Reverchon S, Rodríguez Palenzuela P, et al. The role of secretion systems and small molecules in soft-rot Enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50: 425-49. PMID 22702350 DOI: 10.1146/Annurev-Phyto-081211-173013 |
0.463 |
|
| 2012 |
Babujee L, Apodaca J, Balakrishnan V, Liss P, Kiley PJ, Charkowski AO, Glasner JD, Perna NT. Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria. Bmc Genomics. 13: 110. PMID 22439737 DOI: 10.1186/1471-2164-13-110 |
0.367 |
|
| 2011 |
Marquez-Villavicencio MDP, Groves RL, Charkowski AO. Soft Rot Disease Severity Is Affected by Potato Physiology and Pectobacterium taxa. Plant Disease. 95: 232-241. PMID 30743537 DOI: 10.1094/Pdis-07-10-0526 |
0.496 |
|
| 2011 |
Marquez-Villavicencio Mdel P, Weber B, Witherell RA, Willis DK, Charkowski AO. The 3-hydroxy-2-butanone pathway is required for Pectobacterium carotovorum pathogenesis. Plos One. 6: e22974. PMID 21876734 DOI: 10.1371/Journal.Pone.0022974 |
0.466 |
|
| 2011 |
Jahn CE, Selimi DA, Barak JD, Charkowski AO. The Dickeya dadantii biofilm matrix consists of cellulose nanofibres, and is an emergent property dependent upon the type III secretion system and the cellulose synthesis operon. Microbiology (Reading, England). 157: 2733-44. PMID 21719543 DOI: 10.1099/Mic.0.051003-0 |
0.716 |
|
| 2011 |
Kim HS, Thammarat P, Lommel SA, Hogan CS, Charkowski AO. Pectobacterium carotovorum elicits plant cell death with DspE/F but the P. carotovorum DspE does not suppress callose or induce expression of plant genes early in plant-microbe interactions. Molecular Plant-Microbe Interactions : Mpmi. 24: 773-86. PMID 21469936 DOI: 10.1094/Mpmi-06-10-0143 |
0.814 |
|
| 2011 |
Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G, San Francisco MJ, Charkowski AO, Py B, Bell K, et al. Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193: 2076-7. PMID 21217001 DOI: 10.1128/Jb.01513-10 |
0.683 |
|
| 2011 |
Del Pilar Marquez-Villavicencio M, Groves RL, Charkowski AO. Soft rot disease severity is affected by potato physiology and pectobacterium taxa Plant Disease. 95: 232-241. DOI: 10.1094/PDIS-07-10-0526 |
0.397 |
|
| 2009 |
Allen C, Bent A, Charkowski A. Underexplored niches in research on plant pathogenic bacteria. Plant Physiology. 150: 1631-7. PMID 19561122 DOI: 10.1104/Pp.109.140004 |
0.306 |
|
| 2009 |
Kim HS, Ma B, Perna NT, Charkowski AO. Phylogeny and virulence of naturally occurring type III secretion system-deficient Pectobacterium strains. Applied and Environmental Microbiology. 75: 4539-49. PMID 19411432 DOI: 10.1128/Aem.01336-08 |
0.59 |
|
| 2009 |
Charkowski AO. Decaying signals: will understanding bacterial-plant communications lead to control of soft rot? Current Opinion in Biotechnology. 20: 178-84. PMID 19249200 DOI: 10.1016/J.Copbio.2009.01.005 |
0.419 |
|
| 2009 |
Li Y, Peng Q, Selimi D, Wang Q, Charkowski AO, Chen X, Yang CH. The plant phenolic compound p-coumaric acid represses gene expression in the Dickeya dadantii type III secretion system. Applied and Environmental Microbiology. 75: 1223-8. PMID 19114532 DOI: 10.1128/Aem.02015-08 |
0.545 |
|
| 2008 |
Glasner JD, Marquez-Villavicencio M, Kim HS, Jahn CE, Ma B, Biehl BS, Rissman AI, Mole B, Yi X, Yang CH, Dangl JL, Grant SR, Perna NT, Charkowski AO. Niche-specificity and the variable fraction of the Pectobacterium pan-genome. Molecular Plant-Microbe Interactions : Mpmi. 21: 1549-60. PMID 18986251 DOI: 10.1094/Mpmi-21-12-1549 |
0.723 |
|
| 2008 |
Jahn CE, Willis DK, Charkowski AO. The flagellar sigma factor fliA is required for Dickeya dadantii virulence. Molecular Plant-Microbe Interactions : Mpmi. 21: 1431-42. PMID 18842093 DOI: 10.1094/Mpmi-21-11-1431 |
0.736 |
|
| 2008 |
Jahn CE, Charkowski AO, Willis DK. Evaluation of isolation methods and RNA integrity for bacterial RNA quantitation. Journal of Microbiological Methods. 75: 318-24. PMID 18674572 DOI: 10.1016/J.Mimet.2008.07.004 |
0.645 |
|
| 2008 |
Yap MN, Yang CH, Charkowski AO. The Response regulator HrpY of Dickeya dadantii 3937 regulates virulence genes not linked to the hrp cluster. Molecular Plant-Microbe Interactions : Mpmi. 21: 304-14. PMID 18257680 DOI: 10.1094/Mpmi-21-3-0304 |
0.661 |
|
| 2008 |
Yang S, Peng Q, Zhang Q, Yi X, Choi CJ, Reedy RM, Charkowski AO, Yang CH. Dynamic regulation of GacA in type III secretion, pectinase gene expression, pellicle formation, and pathogenicity of Dickeya dadantii (Erwinia chrysanthemi 3937). Molecular Plant-Microbe Interactions : Mpmi. 21: 133-42. PMID 18052890 DOI: 10.1094/Mpmi-21-1-0133 |
0.481 |
|
| 2007 |
Ma B, Hibbing ME, Kim HS, Reedy RM, Yedidia I, Breuer J, Breuer J, Glasner JD, Perna NT, Kelman A, Charkowski AO. Host range and molecular phylogenies of the soft rot enterobacterial genera pectobacterium and dickeya. Phytopathology. 97: 1150-63. PMID 18944180 DOI: 10.1094/Phyto-97-9-1150 |
0.635 |
|
| 2007 |
Barak JD, Jahn CE, Gibson DL, Charkowski AO. The role of cellulose and O-antigen capsule in the colonization of plants by Salmonella enterica. Molecular Plant-Microbe Interactions : Mpmi. 20: 1083-91. PMID 17849711 DOI: 10.1094/Mpmi-20-9-1083 |
0.731 |
|
| 2007 |
Yang S, Zhang Q, Guo J, Charkowski AO, Glick BR, Ibekwe AM, Cooksey DA, Yang CH. Global effect of indole-3-acetic acid biosynthesis on multiple virulence factors of Erwinia chrysanthemi 3937. Applied and Environmental Microbiology. 73: 1079-88. PMID 17189441 DOI: 10.1128/Aem.01770-06 |
0.475 |
|
| 2007 |
Charkowski AO. Potential disease control strategies revealed by genome sequencing and functional genetics of plant pathogenic bacteria Biotechnology and Plant Disease Management. 462-497. |
0.427 |
|
| 2006 |
Peng Q, Yang S, Charkowski AO, Yap MN, Steeber DA, Keen NT, Yang CH. Population behavior analysis of dspE and pelD regulation in Erwinia chrysanthemi 3937. Molecular Plant-Microbe Interactions : Mpmi. 19: 451-7. PMID 16610748 DOI: 10.1094/Mpmi-19-0451 |
0.59 |
|
| 2006 |
Yap MN, Rojas CM, Yang CH, Charkowski AO. Harpin mediates cell aggregation in Erwinia chrysanthemi 3937. Journal of Bacteriology. 188: 2280-4. PMID 16513758 DOI: 10.1128/Jb.188.6.2280-2284.2006 |
0.775 |
|
| 2006 |
Charkowski AO. The soft rot Erwinia Plant-Associated Bacteria. 423-505. DOI: 10.1007/978-1-4020-4538-7_13 |
0.311 |
|
| 2005 |
Barak JD, Gorski L, Naraghi-Arani P, Charkowski AO. Salmonella enterica virulence genes are required for bacterial attachment to plant tissue. Applied and Environmental Microbiology. 71: 5685-91. PMID 16204476 DOI: 10.1128/Aem.71.10.5685-5691.2005 |
0.48 |
|
| 2005 |
Yap MN, Yang CH, Barak JD, Jahn CE, Charkowski AO. The Erwinia chrysanthemi type III secretion system is required for multicellular behavior. Journal of Bacteriology. 187: 639-48. PMID 15629935 DOI: 10.1128/Jb.187.2.639-648.2005 |
0.771 |
|
| 2004 |
Yap MN, Barak JD, Charkowski AO. Genomic diversity of Erwinia carotovora subsp. carotovora and its correlation with virulence. Applied and Environmental Microbiology. 70: 3013-23. PMID 15128563 DOI: 10.1128/Aem.70.5.3013-3023.2004 |
0.682 |
|
| 2004 |
Charkowski AO. Making sense of an alphabet soup: the use of a new bioinformatics tool for identification of novel gene islands. Focus on "identification of genomic islands in the genome of Bacillus cereus by comparative analysis with Bacillus anthracis". Physiological Genomics. 16: 180-1. PMID 14726601 DOI: 10.1152/Physiolgenomics.00199.2003 |
0.382 |
|
| 2003 |
Deng WL, Rehm AH, Charkowski AO, Rojas CM, Collmer A. Pseudomonas syringae exchangeable effector loci: sequence diversity in representative pathovars and virulence function in P. syringae pv. syringae B728a. Journal of Bacteriology. 185: 2592-602. PMID 12670984 DOI: 10.1128/Jb.185.8.2592-2602.2003 |
0.832 |
|
| 2002 |
Badel JL, Charkowski AO, Deng WL, Collmer A. A gene in the Pseudomonas syringae pv. tomato Hrp pathogenicity island conserved effector locus, hopPtoA1, contributes to efficient formation of bacterial colonies in planta and is duplicated elsewhere in the genome. Molecular Plant-Microbe Interactions : Mpmi. 15: 1014-24. PMID 12437299 DOI: 10.1094/Mpmi.2002.15.10.1014 |
0.828 |
|
| 2002 |
Charkowski AO, Barak JD, Sarreal CZ, Mandrell RE. Differences in growth of Salmonella enterica and Escherichia coli O157:H7 on alfalfa sprouts Applied and Environmental Microbiology. 68: 3114-3120. PMID 12039774 DOI: 10.1128/Aem.68.6.3114-3120.2002 |
0.317 |
|
| 2000 |
Collmer A, Badel JL, Charkowski AO, Deng WL, Fouts DE, Ramos AR, Rehm AH, Anderson DM, Schneewind O, van Dijk K, Alfano JR. Pseudomonas syringae Hrp type III secretion system and effector proteins. Proceedings of the National Academy of Sciences of the United States of America. 97: 8770-7. PMID 10922033 DOI: 10.1073/Pnas.97.16.8770 |
0.819 |
|
| 2000 |
Alfano JR, Charkowski AO, Deng WL, Badel JL, Petnicki-Ocwieja T, van Dijk K, Collmer A. The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants. Proceedings of the National Academy of Sciences of the United States of America. 97: 4856-61. PMID 10781092 DOI: 10.1073/Pnas.97.9.4856 |
0.818 |
|
| 1999 |
Hirano SS, Charkowski AO, Collmer A, Willis DK, Upper CD. Role of the Hrp type III protein secretion system in growth of Pseudomonas syringae pv. syringae B728a on host plants in the field Proceedings of the National Academy of Sciences of the United States of America. 96: 9851-9856. PMID 10449783 DOI: 10.1073/Pnas.96.17.9851 |
0.697 |
|
| 1998 |
Charkowski AO, Alfano JR, Preston G, Yuan J, He SY, Collmer A. The Pseudomonas syringae pv. tomato HrpW protein has domains similar to harpins and pectate lyases and can elicit the plant hypersensitive response and bind to pectate Journal of Bacteriology. 180: 5211-5217. PMID 9748456 DOI: 10.1128/Jb.180.19.5211-5217.1998 |
0.784 |
|
| 1998 |
Bogdanove AJ, Kim JF, Wei Z, Kolchinsky P, Charkowski AO, Conlin AK, Collmer A, Beer SV. Homology and functional similarity of an hrp-linked pathogenicity locus, dspEF, of Erwinia amylovora and the avirulence locus avrE of Pseudomonas syringae pathovar tomato. Proceedings of the National Academy of Sciences of the United States of America. 95: 1325-30. PMID 9448330 DOI: 10.1073/Pnas.95.3.1325 |
0.769 |
|
| 1998 |
Kim JF, Charkowski AO, Alfano JR, Collmer A, Beer SV. Sequences related to transposable elements and bacteriophages flank avirulence genes of Pseudomonas syringae Molecular Plant-Microbe Interactions. 11: 1247-1252. DOI: 10.1094/Mpmi.1998.11.12.1247 |
0.798 |
|
| 1997 |
Charkowski AO, Huang HC, Collmer A. Altered localization of HrpZ in Pseudomonas syringae pv. syringae hrp mutants suggests that different components of the type III secretion pathway control protein translocation across the inner and outer membranes of gram- negative bacteria Journal of Bacteriology. 179: 3866-3874. PMID 9190801 DOI: 10.1128/Jb.179.12.3866-3874.1997 |
0.638 |
|
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