Donald D. Brown - Related publications

Affiliations: 
Carnegie Institution of Washington, Washington, DC, United States 
Area:
hormone signaling, amphibian development
Website:
https://emb.carnegiescience.edu/science/faculty/donald-brown
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Debarba JA, Sehabiague MPC, Monteiro KM, Gerber AL, Vasconcelos ATR, Ferreira HB, Zaha A. Transcriptomic Analysis of the Early Strobilar Development of . Pathogens (Basel, Switzerland). 9. PMID 32545493 DOI: 10.3390/pathogens9060465   
2020 Niyikiza D, Piya S, Routray P, Miao L, Kim WS, Burch-Smith T, Gill T, Sams C, Arelli PR, Pantalone V, Krishnan HB, Hewezi T. Interactions of gene expression, alternative splicing, and DNA methylation in determining nodule identity. The Plant Journal : For Cell and Molecular Biology. PMID 32491251 DOI: 10.1111/tpj.14861   
2020 Thomas QA, Ard R, Liu J, Li B, Wang J, Pelechano V, Marquardt S. Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis. Nature Communications. 11: 2589. PMID 32444691 DOI: 10.1038/s41467-020-16390-7   
2020 Yang J, Xu D, Yu W, Hao R, Wei J. Regulation of aureofuscin production by the PAS-LuxR family regulator AurJ3M. Enzyme and Microbial Technology. 137: 109532. PMID 32423669 DOI: 10.1016/j.enzmictec.2020.109532   
2020 Curion F, Handel AE, Attar M, Gallone G, Bowden R, Cader MZ, Clark MB. Targeted RNA sequencing enhances gene expression profiling of ultra-low input samples. Rna Biology. 1-13. PMID 32597303 DOI: 10.1080/15476286.2020.1777768   
2020 Nebeluk N, Foster TP. Design, Validation and Evaluation of a SYBR Green-based Quantitative PCR Array for Comprehensive Analysis of Adenovirus Type 5 Transcriptional Patterns. Journal of Virological Methods. 113880. PMID 32413477 DOI: 10.1016/j.jviromet.2020.113880   
2020 Das D, Das A, Sahu M, Mishra SS, Khan S, Bejugam PR, Rout PK, Das A, Bano S, Mishra GP, Raghav SK, Dixit A, Panda AC. Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene. International Journal of Molecular Sciences. 21. PMID 32560282 DOI: 10.3390/ijms21124302   
2020 Nuthikattu S, Milenkovic D, Rutledge JC, Villablanca AC. Lipotoxic Injury Differentially Regulates Brain Microvascular Gene Expression in Male Mice. Nutrients. 12. PMID 32545722 DOI: 10.3390/nu12061771   
2020 Thillainadesan G, Xiao H, Holla S, Dhakshnamoorthy J, Jenkins LMM, Wheeler D, Grewal SIS. Conserved protein Pir2 mediates gene repression through cryptic introns in lncRNAs. Nature Communications. 11: 2412. PMID 32415063 DOI: 10.1038/s41467-020-16280-y   
2020 Calviello L, Hirsekorn A, Ohler U. Quantification of translation uncovers the functions of the alternative transcriptome. Nature Structural & Molecular Biology. PMID 32601440 DOI: 10.1038/s41594-020-0450-4   
2020 Wang XW, Lv JL, Shi YR, Guo LY. Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in . Frontiers in Genetics. 11: 508. PMID 32508886 DOI: 10.3389/fgene.2020.00508   
2020 Wang XW, Lv JL, Shi YR, Guo LY. Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in . Frontiers in Genetics. 11: 508. PMID 32508886 DOI: 10.3389/fgene.2020.00508   
2020 Bakker R, Mani M, Carthew RW. The Wg and Dpp morphogens regulate gene expression by modulating the frequency of transcriptional bursts. Elife. 9. PMID 32568073 DOI: 10.7554/eLife.56076   
2020 van der Sijde F, Li Y, Schraauwen R, de Koning W, van Eijck CHJ, Mustafa DAM. RNA from stabilized whole blood enables more comprehensive immune gene expression profiling compared to RNA from peripheral blood mononuclear cells. Plos One. 15: e0235413. PMID 32589655 DOI: 10.1371/journal.pone.0235413   
2020 Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T, Okamura T, Ohkawa Y, Kimura H, Nikaido I. Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. Science Advances. 6: eaaz6699. PMID 32596448 DOI: 10.1126/sciadv.aaz6699   
2020 Schmitz JF, Chain FJJ, Bornberg-Bauer E. Evolution of novel genes in three-spined stickleback populations. Heredity. PMID 32499660 DOI: 10.1038/s41437-020-0319-7   
2020 Puttabyatappa M, Guo X, Dou J, Dumesic D, Bakulski KM, Padmanabhan V. Developmental Programming: Sheep Granulosa and Theca Cell-Specific Transcriptional Regulation by Prenatal Testosterone. Endocrinology. PMID 32516392 DOI: 10.1210/endocr/bqaa094   
2020 Tang X, Ding X, Hou YL. Comparative analysis of transcriptomes revealed the molecular mechanism of development of at different stages of fruiting bodies. Food Science and Biotechnology. 29: 939-951. PMID 32582456 DOI: 10.1007/s10068-020-00732-8   
2020 Saripalli G, Singh K, Gautam T, Kumar S, Raghuvanshi S, Prasad P, Jain N, Sharma PK, Balyan HS, Gupta PK. Genome-wide analysis of H3K4me3 and H3K27me3 modifications due to Lr28 for leaf rust resistance in bread wheat (Triticum aestivum). Plant Molecular Biology. PMID 32627097 DOI: 10.1007/s11103-020-01029-4   
2020 Wu F, Shim J, Tan C. Orthogonal tuning of gene expression noise using CRISPR-Cas. Nucleic Acids Research. PMID 32479612 DOI: 10.1093/nar/gkaa451   
2020 Saito S, Suzuki T. How do signaling and transcription factors regulate both axis elongation and Hox gene expression along the anteroposterior axis? Development, Growth & Differentiation. PMID 32446291 DOI: 10.1111/dgd.12682   
2020 Radens CM, Blake D, Jewell P, Barash Y, Lynch KW. Meta-Analysis of Transcriptomic Variation in T cell Populations Reveals both Variable and Consistent Signatures of Gene Expression and Splicing. Rna (New York, N.Y.). PMID 32554554 DOI: 10.1261/rna.075929.120   
2020 Geigges M, Gubser PM, Unterstab G, Lecoultre Y, Paro R, Hess C. Reference Genes for Expression Studies in Human CD8 Naïve and Effector Memory T Cells under Resting and Activating Conditions. Scientific Reports. 10: 9411. PMID 32523060 DOI: 10.1038/s41598-020-66367-1   
2020 Wang J, Zhou H, Hickford JGH, Hao Z, Shen J, Luo Y, Hu J, Liu X, Li S. Comparison of the Transcriptome of the Ovine Mammary Gland in Lactating and Non-lactating Small-Tailed Han Sheep. Frontiers in Genetics. 11: 472. PMID 32508880 DOI: 10.3389/fgene.2020.00472   
2020 Holmes G, Gonzalez-Reiche AS, Lu N, Zhou X, Rivera J, Kriti D, Sebra R, Williams AA, Donovan MJ, Potter SS, Pinto D, Zhang B, van Bakel H, Jabs EW. Integrated Transcriptome and Network Analysis Reveals Spatiotemporal Dynamics of Calvarial Suturogenesis. Cell Reports. 32: 107871. PMID 32640236 DOI: 10.1016/j.celrep.2020.107871   
2020 Peng W, Yu S, Handler AM, Zhang H. Transcriptome Analysis of the Oriental Fruit Fly Early Embryos. Insects. 11. PMID 32456171 DOI: 10.3390/insects11050323   
2020 Hu W, Wang Q, Wang S, Wang M, Wang C, Tian Z, Liu X, Ji W, Zhang H. Gene co-expression network analysis provides a novel insight into the dynamic response of wheat to powdery mildew stress. Journal of Genetics. 99. PMID 32529987   
2020 Li X, Lei Y, Yu Y, Zhang Y, Zhang W, Shen H, Tao C, Wu F, Huang S, Shao H. Discovery and characterization of a novel splice variant of the p53 tumor suppressor gene in a human T cell leukemia cellline. International Journal of Clinical and Experimental Pathology. 13: 1121-1135. PMID 32509087   
2020 Yague-Sanz C, Vanrobaeys Y, Fernandez R, Duval M, Larochelle M, Beaudoin J, Berro J, Labbé S, Jacques PÉ, Bachand F. Nutrient-dependent control of RNA polymerase II elongation rate regulates specific gene expression programs by alternative polyadenylation. Genes & Development. PMID 32499400 DOI: 10.1101/gad.337212.120   
2020 Gurdon JB, Javed K, Vodnala M, Garrett N. Long-term association of a transcription factor with its chromatin binding site can stabilize gene expression and cell fate commitment. Proceedings of the National Academy of Sciences of the United States of America. 117: 15075-15084. PMID 32532919 DOI: 10.1073/pnas.2000467117   
2020 Cao Y, Xu X, Jiang L. Integrative analysis of the RNA interference toolbox in two Salicaceae willow species, and their roles in stress response in poplar (Populus trichocarpa Torr. & Gray). International Journal of Biological Macromolecules. PMID 32599244 DOI: 10.1016/j.ijbiomac.2020.06.235   
2020 Borriello G, Russo V, Paradiso R, Riccardi MG, Criscuolo D, Verde G, Marasco R, Pedone PV, Galiero G, Baglivo I. Different Impacts of MucR Binding to the and Promoters on Gene Expression in 2308. Biomolecules. 10. PMID 32438765 DOI: 10.3390/biom10050788   
2020 Berenguer M, Meyer KF, Yin J, Duester G. Discovery of genes required for body axis and limb formation by global identification of retinoic acid-regulated epigenetic marks. Plos Biology. 18: e3000719. PMID 32421711 DOI: 10.1371/journal.pbio.3000719   
2020 Chaparian RR, Ball AS, van Kessel JC. Hierarchical transcriptional control of the LuxR quorum-sensing regulon of . Journal of Bacteriology. PMID 32366592 DOI: 10.1128/JB.00047-20   
2020 Zhang H, Brown RD, Stenmark KR, Hu CJ. RNA-Binding Proteins in Pulmonary Hypertension. International Journal of Molecular Sciences. 21. PMID 32466553 DOI: 10.3390/ijms21113757   
2020 Jaeger MG, Schwalb B, Mackowiak SD, Velychko T, Hanzl A, Imrichova H, Brand M, Agerer B, Chorn S, Nabet B, Ferguson FM, Müller AC, Bergthaler A, Gray NS, Bradner JE, et al. Selective Mediator dependence of cell-type-specifying transcription. Nature Genetics. PMID 32483291 DOI: 10.1038/s41588-020-0635-0   
2020 Álvarez-Escribano I, Brenes-Álvarez M, Olmedo-Verd E, Vioque A, Muro-Pastor AM. The Nitrogen Stress-Repressed sRNA NsrR1 Regulates Expression of , a Gene Required for Diazotrophic Growth in sp. PCC 7120. Life (Basel, Switzerland). 10. PMID 32365616 DOI: 10.3390/life10050054   
2020 Wu Y, Song T, Chen P, Jiang X, Wang Q, Chen Q. Prolonged siRNA expression in mammalian cells using an Epstein-Barr virus-based plasmid expression system. Biochemical and Biophysical Research Communications. 529: 51-56. PMID 32560818 DOI: 10.1016/j.bbrc.2020.05.219   
2020 Shao Y, Wang XB, Zhang JJ, Li ML, Wu SS, Ma XY, Wang X, Zhao HF, Li Y, Zhu HH, Irwin DM, Wang DP, Zhang GJ, Ruan J, Wu DD. Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration. Nature Communications. 11: 2656. PMID 32461609 DOI: 10.1038/s41467-020-16454-8   
2020 Wu D, Wang Y, Xu X. Effects of a Type I RM System on Gene Expression and Glycogen Catabolism in sp. PCC 6803. Frontiers in Microbiology. 11: 1258. PMID 32582132 DOI: 10.3389/fmicb.2020.01258   
2020 Fernandez GJ, Ferreira JH, Vechetti IJ, de Moraes LN, Cury SS, Freire PP, Gutiérrez J, Ferretti R, Dal-Pai-Silva M, Rogatto SR, Carvalho RF. MicroRNA-mRNA Co-sequencing Identifies Transcriptional and Post-transcriptional Regulatory Networks Underlying Muscle Wasting in Cancer Cachexia. Frontiers in Genetics. 11: 541. PMID 32547603 DOI: 10.3389/fgene.2020.00541   
2020 Azpeitia E, Wagner A. Short Residence Times of DNA-Bound Transcription Factors Can Reduce Gene Expression Noise and Increase the Transmission of Information in a Gene Regulation System. Frontiers in Molecular Biosciences. 7: 67. PMID 32411721 DOI: 10.3389/fmolb.2020.00067   
2020 Gutiérrez CL, Muñoz C, San Martín M, Cadoret JP, Henríquez V. Chloroplast Dual Divergent Promoter Plasmid for Heterologous Protein Expression in Tetraselmis suecica (Chlorophyceae, Chlorodendrales). Journal of Phycology. PMID 32359200 DOI: 10.1111/jpy.13013   
2020 Poudel S, Tsunemoto H, Seif Y, Sastry AV, Szubin R, Xu S, Machado H, Olson CA, Anand A, Pogliano J, Nizet V, Palsson BO. Revealing 29 sets of independently modulated genes in , their regulators, and role in key physiological response. Proceedings of the National Academy of Sciences of the United States of America. PMID 32616573 DOI: 10.1073/pnas.2008413117   
2020 Cai H, Li M, Jian W, Song C, Huang Y, Lan X, Lei C, Chen H. A novel lncRNA BADLNCR1 inhibits bovine adipogenesis by repressing GLRX5 expression. Journal of Cellular and Molecular Medicine. PMID 32449295 DOI: 10.1111/jcmm.15181   
2020 Cheng Y, Li L, Qin Z, Li X, Qi F. Identification of castration-resistant prostate cancer-related hub genes using weighted gene co-expression network analysis. Journal of Cellular and Molecular Medicine. PMID 32485038 DOI: 10.1111/jcmm.15432   
2020 York TP, Latendresse SJ, Jackson-Cook C, Lapato DM, Moyer S, Wolen AR, Roberson-Nay R, Do EK, Murphy SK, Hoyo C, Fuemmeler BF, Strauss JF. Replicated umbilical cord blood DNA methylation loci associated with gestational age at birth. Epigenetics. 1-16. PMID 32448018 DOI: 10.1080/15592294.2020.1767277   
2020 Roth SJ, Heinz S, Benner C. ARTDeco: automatic readthrough transcription detection. Bmc Bioinformatics. 21: 214. PMID 32456667 DOI: 10.1186/s12859-020-03551-0   
2020 Zhang D, Guelfi S, Garcia-Ruiz S, Costa B, Reynolds RH, D'Sa K, Liu W, Courtin T, Peterson A, Jaffe AE, Hardy J, Botía JA, Collado-Torres L, Ryten M. Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders. Science Advances. 6: eaay8299. PMID 32577506 DOI: 10.1126/sciadv.aay8299   
2020 Oudelaar AM, Beagrie RA, Gosden M, de Ornellas S, Georgiades E, Kerry J, Hidalgo D, Carrelha J, Shivalingam A, El-Sagheer AH, Telenius JM, Brown T, Buckle VJ, Socolovsky M, Higgs DR, et al. Dynamics of the 4D genome during in vivo lineage specification and differentiation. Nature Communications. 11: 2722. PMID 32483172 DOI: 10.1038/s41467-020-16598-7