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Zafer Aydin, Ph.D. - Publications

Affiliations: 
2008 Georgia Institute of Technology, Atlanta, GA 
Area:
Electronics and Electrical Engineering, Bioinformatics Biology
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Gormez Y, Aydin Z. IGPRED-MultiTask: A Deep Learning Model to Predict Protein Secondary Structure, Torsion Angles and Solvent Accessibility. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 35849663 DOI: 10.1109/TCBB.2022.3191395  0.438
2021 Görmez Y, Sabzekar M, Aydın Z. IGPRED: Combination of convolutional neural and graph convolutional networks for protein secondary structure prediction. Proteins. PMID 33993559 DOI: 10.1002/prot.26149  0.393
2020 Azginoglu N, Aydin Z, Celik M. Structural profile matrices for predicting structural properties of proteins. Journal of Bioinformatics and Computational Biology. 2050022. PMID 32649260 DOI: 10.1142/S0219720020500225  0.574
2019 Aydin Z, Azginoglu N, Bilgin HI, Celik M. Developing Structural Profile Matrices for Protein Secondary Structure and Solvent Accessibility Prediction. Bioinformatics (Oxford, England). PMID 30937435 DOI: 10.1093/Bioinformatics/Btz238  0.546
2019 Atasever S, Aydın Z, Erbay H, Sabzekar M. Sample Reduction Strategies for Protein Secondary Structure Prediction Applied Sciences. 9: 4429. DOI: 10.3390/App9204429  0.451
2018 Aydin Z, Kaynar O, Görmez Y. Dimensionality reduction for protein secondary structure and solvent accesibility prediction. Journal of Bioinformatics and Computational Biology. 1850020. PMID 30353781 DOI: 10.1142/S0219720018500208  0.528
2017 Sabzekar M, Naghibzadeh M, Eghdami M, Aydin Z. Protein β-sheet prediction using an efficient dynamic programming algorithm. Computational Biology and Chemistry. 70: 142-155. PMID 28881217 DOI: 10.1016/J.Compbiolchem.2017.08.011  0.401
2015 Aydin Z, Baker D, Noble WS. Template scoring methods for protein torsion angle prediction Communications in Computer and Information Science. 574: 206-223. DOI: 10.1007/978-3-319-27707-3_13  0.39
2015 Aydin Z, Baker D, Noble WS. Constructing structural profiles for protein torsion angle prediction Bioinformatics 2015 - 6th International Conference On Bioinformatics Models, Methods and Algorithms, Proceedings; Part of 8th International Joint Conference On Biomedical Engineering Systems and Technologies, Biostec 2015. 26-35.  0.449
2011 Aydin Z, Singh A, Bilmes J, Noble WS. Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure. Bmc Bioinformatics. 12: 154. PMID 21569525 DOI: 10.1186/1471-2105-12-154  0.584
2011 Aydin Z, Altunbasak Y, Erdogan H. Bayesian models and algorithms for protein β-sheet prediction. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 395-409. PMID 21233522 DOI: 10.1109/Tcbb.2008.140  0.576
2007 Aydin Z, Altunbasak Y, Pakatci IK, Erdogan H. Training set reduction methods for protein secondary structure prediction in single-sequence condition. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2007: 5025-8. PMID 18003135 DOI: 10.1109/IEMBS.2007.4353469  0.684
2007 Aydin Z, Altunbasak Y, Erdogan H. Bayesian protein secondary structure prediction with near-optimal segmentations Ieee Transactions On Signal Processing. 55: 3512-3525. DOI: 10.1109/Tsp.2007.894404  0.658
2007 Pakatci IK, Aydin Z, Erdoǧan H, Altunbaşak Y. Training set reduction methods for single sequence protein secondary structure prediction 2007 Ieee 15th Signal Processing and Communications Applications, Siu. DOI: 10.1109/SIU.2007.4298737  0.686
2007 Aydin Z, Erdogan H, Altunbasak Y. Protein fold recognition using residue-based alignments of sequence and secondary structure Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 1. DOI: 10.1109/ICASSP.2007.366688  0.632
2006 Aydin Z, Altunbasak Y, Borodovsky M. Protein secondary structure prediction for a single-sequence using hidden semi-Markov models. Bmc Bioinformatics. 7: 178. PMID 16571137 DOI: 10.1186/1471-2105-7-178  0.695
2006 Aydin Z, Altunbasak Y. A signal processing application in genomic research: Protein secondary structure prediction Ieee Signal Processing Magazine. 23: 128-131. DOI: 10.1109/Msp.2006.1657827  0.699
2005 Aydin Z, Akgun T, Altunbasak Y. A modified stack decoder for protein secondary structure prediction Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. IV737-IV740. DOI: 10.1109/ICASSP.2005.1416114  0.689
2004 Aydin Z, Altunbasak Y, Borodovsky M. Protein secondary structure prediction with semi Markov HMMs. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 4: 2964-7. PMID 17270900 DOI: 10.1109/IEMBS.2004.1403841  0.662
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