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Patrik D'haeseleer, Ph.D. - Publications

Affiliations: 
2000 University of New Mexico, Albuquerque, NM, United States 
Area:
Computer Science, Biostatistics Biology, Molecular Biology
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Griesemer M, Kimbrel JA, Zhou CE, Navid A, D'haeseleer P. Combining multiple functional annotation tools increases coverage of metabolic annotation. Bmc Genomics. 19: 948. PMID 30567498 DOI: 10.1186/S12864-018-5221-9  0.351
2016 D'haeseleer P, Johnson SL, Davenport KW, Chain PS, Schoeniger J, Ray D, Sinha A, Williams KP, Peña J, Branda SS, El-Etr S. Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6. Genome Announcements. 4. PMID 27365360 DOI: 10.1128/Genomea.00649-16  0.365
2013 D'haeseleer P, Gladden JM, Allgaier M, Chain PS, Tringe SG, Malfatti SA, Aldrich JT, Nicora CD, Robinson EW, PaÅ¡a-Tolić L, Hugenholtz P, Simmons BA, Singer SW. Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass. Plos One. 8: e68465. PMID 23894306 DOI: 10.1371/Journal.Pone.0068465  0.406
2012 Park JI, Steen EJ, Burd H, Evans SS, Redding-Johnson AM, Batth T, Benke PI, D'haeseleer P, Sun N, Sale KL, Keasling JD, Lee TS, Petzold CJ, Mukhopadhyay A, Singer SW, et al. A pie chart showing the percent relative abundance of each taxon in the McCel-adapted thermophilic bacterial consortia. Plos One. DOI: 10.1371/Journal.Pone.0037010.G002  0.303
2011 Muyzer G, Sorokin DY, Mavromatis K, Lapidus A, Foster B, Sun H, Ivanova N, Pati A, D'haeseleer P, Woyke T, Kyrpides NC. Complete genome sequence of Thioalkalivibrio sp. K90mix. Standards in Genomic Sciences. 5: 341-55. PMID 22675584 DOI: 10.4056/sigs.2315092  0.386
2011 Deangelis KM, D'Haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport KW, Goodwin L, Chen A, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, et al. Complete genome sequence of "Enterobacter lignolyticus" SCF1. Standards in Genomic Sciences. 5: 69-85. PMID 22180812 DOI: 10.4056/Sigs.2104875  0.35
2011 Muyzer G, Sorokin DY, Mavromatis K, Lapidus A, Clum A, Ivanova N, Pati A, d'Haeseleer P, Woyke T, Kyrpides NC. Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7. Standards in Genomic Sciences. 4: 23-35. PMID 21475584 DOI: 10.4056/sigs.1483693  0.381
2010 Allgaier M, Reddy A, Park JI, Ivanova N, D'haeseleer P, Lowry S, Sapra R, Hazen TC, Simmons BA, VanderGheynst JS, Hugenholtz P. Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community. Plos One. 5: e8812. PMID 20098679 DOI: 10.1371/Journal.Pone.0008812  0.337
2009 Pukall R, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Kuske C, Brettin T, Detter JC, et al. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Standards in Genomic Sciences. 1: 234-41. PMID 21304663 DOI: 10.4056/Sigs.37633  0.485
2009 Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, et al. Complete genome sequence of Halogeometricum borinquense type strain (PR3). Standards in Genomic Sciences. 1: 150-9. PMID 21304651 DOI: 10.4056/Sigs.23264  0.481
2009 Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, et al. Complete genome sequence of Saccharomonospora viridis type strain (P101). Standards in Genomic Sciences. 1: 141-9. PMID 21304650 DOI: 10.4056/Sigs.20263  0.476
2009 Ivanova N, Sikorski J, Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, et al. Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Standards in Genomic Sciences. 1: 110-8. PMID 21304646 DOI: 10.4056/Sigs.16197  0.477
2009 Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, et al. Complete genome sequence of Cryptobacterium curtum type strain (12-3). Standards in Genomic Sciences. 1: 93-100. PMID 21304644 DOI: 10.4056/Sigs.12260  0.488
2009 Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, et al. Complete genome sequence of Kytococcus sedentarius type strain (541). Standards in Genomic Sciences. 1: 12-20. PMID 21304632 DOI: 10.4056/Sigs.761  0.495
2009 Lapidus A, Pukall R, Labuttii K, Copeland A, Del Rio TG, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Rohde M, Göker M, et al. Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Standards in Genomic Sciences. 1: 3-11. PMID 21304631 DOI: 10.4056/Sigs.492  0.494
2009 Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature. 462: 1056-60. PMID 20033048 DOI: 10.1038/Nature08656  0.419
2009 Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, et al. Complete genome sequence of Halogeometricum borinquense type strain (PR 3) Standards in Genomic Sciences. 1: 150-158. DOI: 10.4056/23264  0.349
2008 Baker SE, Thykaer J, Adney WS, Brettin TS, Brockman FJ, D'haeseleer P, Martinez AD, Miller RM, Rokhsar DS, Schadt CW, Torok T, Tuskan G, Bennett J, Berka RM, Briggs SP, et al. Fungal genome sequencing and bioenergy Fungal Biology Reviews. 22: 1-5. DOI: 10.1016/J.Fbr.2008.03.001  0.462
2006 D'haeseleer P. How does DNA sequence motif discovery work? Nature Biotechnology. 24: 959-61. PMID 16900144 DOI: 10.1038/Nbt0806-959  0.326
2006 Nguyen DH, D'haeseleer P. Deciphering principles of transcription regulation in eukaryotic genomes. Molecular Systems Biology. 2: 2006.0012. PMID 16738557 DOI: 10.1038/Msb4100054  0.326
2006 D'haeseleer P. What are DNA sequence motifs? Nature Biotechnology. 24: 423-5. PMID 16601727 DOI: 10.1038/Nbt0406-423  0.353
2003 Segrè D, Zucker J, Katz J, Lin X, D'haeseleer P, Rindone WP, Kharchenko P, Nguyen DH, Wright MA, Church GM. From annotated genomes to metabolic flux models and kinetic parameter fitting. Omics : a Journal of Integrative Biology. 7: 301-16. PMID 14583118 DOI: 10.1089/153623103322452413  0.362
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