Maria Spies - Publications

Affiliations: 
University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
Biochemistry

82 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Hengel SR, Oppenheimer K, Smith C, Schaich MA, Rein HL, Martino J, Darrah K, Ezekwenna O, Burton K, Van Houten B, Spies M, Bernstein KA. The human Shu complex promotes RAD51 activity by modulating RPA dynamics on ssDNA. Biorxiv : the Preprint Server For Biology. PMID 38405734 DOI: 10.1101/2024.02.14.580393  0.395
2023 Honda M, Razzaghi M, Gaur P, Malacaria E, Di Biagi L, Aiello FA, Paintsil EA, Stanfield A, Deppe BJ, Gakhar L, Schnicker NJ, Spies MA, Pichierri P, Spies M. Human RAD52 double-ring remodels replication forks restricting fork reversal. Biorxiv : the Preprint Server For Biology. PMID 38014173 DOI: 10.1101/2023.11.14.566657  0.695
2023 Gall-Duncan T, Luo J, Jurkovic CM, Fischer LA, Fujita K, Deshmukh AL, Harding RJ, Tran S, Mehkary M, Li V, Leib DE, Chen R, Tanaka H, Mason AG, Lévesque D, ... ... Spies M, et al. Antagonistic roles of canonical and Alternative-RPA in disease-associated tandem CAG repeat instability. Cell. PMID 37827155 DOI: 10.1016/j.cell.2023.09.008  0.379
2023 Hong L, Braden DC, Zhao Y, Skoko JJ, Chang F, Woodcock SR, Uvalle C, Casey A, Wood K, Salvatore SR, Asan A, Harkness T, Fagunloye A, Razzaghi M, Straub A, ... Spies M, et al. Small molecule nitroalkenes inhibit RAD51-mediated homologous recombination and amplify triple-negative breast cancer cell killing by DNA-directed therapies. Biorxiv : the Preprint Server For Biology. PMID 37645906 DOI: 10.1101/2023.08.11.552990  0.38
2023 Hong L, Braden DC, Zhao Y, Skoko JJ, Chang F, Woodcock SR, Uvalle C, Casey A, Wood K, Salvatore SR, Asan A, Harkness T, Fagunloye A, Razzaghi M, Straub A, ... Spies M, et al. Small molecule nitroalkenes inhibit RAD51-mediated homologous recombination and amplify triple-negative breast cancer cell killing by DNA-directed therapies. Redox Biology. 66: 102856. PMID 37633047 DOI: 10.1016/j.redox.2023.102856  0.375
2023 Granger SL, Sharma R, Kaushik V, Razzaghi M, Honda M, Bhat DS, Wlodarski MW, Antony E, Spies M. Human hnRNPA1 reorganizes telomere-bound Replication Protein A. Biorxiv : the Preprint Server For Biology. PMID 37214874 DOI: 10.1101/2023.05.09.540056  0.486
2023 Fairlamb MS, Spies M, Washington TM, Freudenthal BD. Visualizing the coordination of apurinic/apyrimidinic endonuclease (APE1) and DNA Polymerase β during Base Excision Repair. The Journal of Biological Chemistry. 104636. PMID 36963489 DOI: 10.1016/j.jbc.2023.104636  0.354
2023 Ling JA, Gildenberg MS, Honda M, Kondratick CM, Spies M, Washington MT. Fork-Remodeling Helicase Rad5 Preferentially Reverses Replication Forks with Gaps in the Leading Strand. Journal of Molecular Biology. 435: 167946. PMID 36623584 DOI: 10.1016/j.jmb.2023.167946  0.487
2022 Bhat DS, Spies MA, Spies M. A moving target for drug discovery: Structure activity relationship and many genome (de)stabilizing functions of the RAD52 protein. Dna Repair. 120: 103421. PMID 36327799 DOI: 10.1016/j.dnarep.2022.103421  0.303
2022 Skoko JJ, Cao J, Gaboriau D, Attar M, Asan A, Hong L, Paulsen CE, Ma H, Liu Y, Wu H, Harkness T, Furdui CM, Manevich Y, Morrison CG, Brown ET, ... ... Spies M, ... ... Spies MA, et al. Redox regulation of RAD51 Cys319 and homologous recombination by peroxiredoxin 1. Redox Biology. 56: 102443. PMID 36058112 DOI: 10.1016/j.redox.2022.102443  0.449
2021 Sharma R, Sahoo SS, Honda M, Granger SL, Goodings C, Sanchez L, Künstner A, Busch H, Beier F, Pruett-Miller SM, Valentine M, Fernandez AG, Chang TC, Géli V, Churikov D, ... ... Spies M, et al. Gain-of-Function Mutations in RPA1 Cause a Syndrome with Short Telomeres and Somatic Genetic Rescue. Blood. PMID 34767620 DOI: 10.1182/blood.2021011980  0.362
2021 Fairlamb MS, Whitaker AM, Bain FE, Spies M, Freudenthal BD. Construction of a Three-Color Prism-Based TIRF Microscope to Study the Interactions and Dynamics of Macromolecules. Biology. 10. PMID 34201434 DOI: 10.3390/biology10070571  0.319
2021 Kondratick CM, Washington MT, Spies M. Making Choices: DNA Replication Fork Recovery Mechanisms. Seminars in Cell & Developmental Biology. 113: 27-37. PMID 33967572 DOI: 10.1016/j.semcdb.2020.10.001  0.427
2021 Spies M. Getting swept off your toe(hold)s: Single-molecule DNA fission analysis offers glimpse into kinetics of branch migration. Biophysical Journal. 120: 2367-2369. PMID 33965058 DOI: 10.1016/j.bpj.2021.04.014  0.384
2021 Stekas B, Yeo S, Troitskaia A, Honda M, Sho S, Spies M, Chemla YR. Switch-like control of helicase processivity by single-stranded DNA binding protein. Elife. 10. PMID 33739282 DOI: 10.7554/eLife.60515  0.481
2021 Hefel A, Honda M, Cronin N, Harrell K, Patel P, Spies M, Smolikove S. RPA complexes in Caenorhabditis elegans meiosis; unique roles in replication, meiotic recombination and apoptosis. Nucleic Acids Research. PMID 33476370 DOI: 10.1093/nar/gkaa1293  0.302
2020 Kondratick CM, Washington MT, Spies M. Making choices: DNA replication fork recovery mechanisms. Seminars in Cell & Developmental Biology. PMID 34756358 DOI: 10.1016/j.semcdb.2020.10.001  0.406
2020 Caldwell CC, Spies M. Dynamic elements of replication protein A at the crossroads of DNA replication, recombination, and repair. Critical Reviews in Biochemistry and Molecular Biology. 1-26. PMID 32856505 DOI: 10.1080/10409238.2020.1813070  0.544
2020 Subramanyam S, Spies M. RAD51 discrimination between single- and double-strand DNA: a matter of flexibility and enthalpy. The Embo Journal. 39: e104547. PMID 32090346 DOI: 10.15252/Embj.2020104547  0.539
2020 Malacaria E, Honda M, Franchitto A, Spies M, Pichierri P. Physiological and Pathological Roles of RAD52 at DNA Replication Forks. Cancers. 12. PMID 32050645 DOI: 10.3390/Cancers12020402  0.468
2020 Honda M, Paintsil EA, Spies M. RAD52 DNA Repair Protein is a Gatekeeper that Protects DNA Replication Forks from Regression by Fork Reversal Motors Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.988  0.524
2020 Troitskaia A, Stekas B, Spies M, Chemla YR. Sequence-Dependent Pausing of a DNA Repair Helicase Biophysical Journal. 118: 375a. DOI: 10.1016/J.Bpj.2019.11.2144  0.498
2019 Stefanovie B, Hengel SR, Mlcouskova J, Prochazkova J, Spirek M, Nikulenkov F, Nemecek D, Koch BG, Bain FE, Yu L, Spies M, Krejci L. DSS1 interacts with and stimulates RAD52 to promote the repair of DSBs. Nucleic Acids Research. PMID 31799622 DOI: 10.1093/Nar/Gkz1052  0.521
2019 Malacaria E, Pugliese GM, Honda M, Marabitti V, Aiello FA, Spies M, Franchitto A, Pichierri P. Rad52 prevents excessive replication fork reversal and protects from nascent strand degradation. Nature Communications. 10: 1412. PMID 30926821 DOI: 10.1038/S41467-019-09196-9  0.436
2019 Pokhrel N, Caldwell CC, Corless EI, Tillison EA, Tibbs J, Jocic N, Tabei SMA, Wold MS, Spies M, Antony E. Dynamics and selective remodeling of the DNA-binding domains of RPA. Nature Structural & Molecular Biology. 26: 129-136. PMID 30723327 DOI: 10.1038/S41594-018-0181-Y  0.556
2019 Spies M, Dillingham MS. Decision letter: Novel RNA and DNA strand exchange activity of the PALB2 DNA binding domain and its critical role for DNA repair in cells Elife. DOI: 10.7554/Elife.44063.032  0.559
2018 Yates LA, Aramayo RJ, Pokhrel N, Caldwell CC, Kaplan JA, Perera RL, Spies M, Antony E, Zhang X. A structural and dynamic model for the assembly of Replication Protein A on single-stranded DNA. Nature Communications. 9: 5447. PMID 30575763 DOI: 10.1038/S41467-018-07883-7  0.562
2018 Subramanyam S, Kinz-Thompson CD, Gonzalez RL, Spies M. Observation and Analysis of RAD51 Nucleation Dynamics at Single-Monomer Resolution. Methods in Enzymology. 600: 201-232. PMID 29458759 DOI: 10.1016/Bs.Mie.2017.12.008  0.529
2018 Subramanyam S, Spies M. Expression, Purification, and Biochemical Evaluation of Human RAD51 Protein. Methods in Enzymology. 600: 157-178. PMID 29458757 DOI: 10.1016/Bs.Mie.2017.11.011  0.55
2018 Spies M. Decision letter: Hexameric helicase G40P unwinds DNA in single base pair steps Elife. DOI: 10.7554/Elife.42001.016  0.44
2017 Caldwell CC, Spies M. Helicase SPRNTing through the nanopore. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078420 DOI: 10.1073/Pnas.1716866114  0.482
2017 Hengel SR, Spies MA, Spies M. Small-Molecule Inhibitors Targeting DNA Repair and DNA Repair Deficiency in Research and Cancer Therapy. Cell Chemical Biology. 24: 1101-1119. PMID 28938088 DOI: 10.1016/J.Chembiol.2017.08.027  0.537
2017 Xu Z, Gakhar L, Bain FE, Spies M, Fuentes EJ. The Tiam1 Guanine Nucleotide Exchange Factor is Auto-inhibited by its Pleckstrin Homology Coiled-Coil Extension Domain. The Journal of Biological Chemistry. PMID 28882897 DOI: 10.1074/Jbc.M117.799114  0.635
2017 Spies M. A time for promiscuity in a eukaryotic recombinase. The Journal of Biological Chemistry. 292: 11136-11137. PMID 28667173 DOI: 10.1074/Jbc.H117.787614  0.544
2017 Stekas B, Honda M, Spies M, Chemla Y. Investigating the Enhancement of XPD Helicase Processivity by Single-Stranded Binding Protein RPA2 Biophysical Journal. 112: 513a. DOI: 10.1016/J.Bpj.2016.11.2772  0.589
2017 Spies M. Single-Molecule Sorting of Human DNA Repair Enzymes Biophysical Journal. 112: 5a-6a. DOI: 10.1016/J.Bpj.2016.11.052  0.528
2016 Boehm EM, Subramanyam S, Ghoneim M, Washington MT, Spies M. Quantifying the Assembly of Multicomponent Molecular Machines by Single-Molecule Total Internal Reflection Fluorescence Microscopy. Methods in Enzymology. 581: 105-145. PMID 27793278 DOI: 10.1016/Bs.Mie.2016.08.019  0.315
2016 Subramanyam S, Ismail M, Bhattacharya I, Spies M. Tyrosine phosphorylation stimulates activity of human RAD51 recombinase through altered nucleoprotein filament dynamics. Proceedings of the National Academy of Sciences of the United States of America. PMID 27671650 DOI: 10.1073/Pnas.1604807113  0.478
2016 Hengel SR, Malacaria E, Folly da Silva Constantino L, Bain FE, Diaz A, Koch BG, Yu L, Wu M, Pichierri P, Spies MA, Spies M. Small-molecule inhibitors identify the RAD52-ssDNA interaction as critical for recovery from replication stress and for survival of BRCA2 deficient cells. Elife. 5. PMID 27434671 DOI: 10.7554/Elife.14740  0.44
2016 Wu CG, Spies M. G-quadruplex recognition and remodeling by the FANCJ helicase. Nucleic Acids Research. PMID 27342280 DOI: 10.1093/Nar/Gkw574  0.467
2016 Boehm EM, Spies M, Washington MT. PCNA tool belts and polymerase bridges form during translesion synthesis. Nucleic Acids Research. PMID 27325737 DOI: 10.1093/Nar/Gkw563  0.507
2016 Bain FE, Wu CG, Spies M. Single-molecule sorting of DNA helicases. Methods (San Diego, Calif.). PMID 27223403 DOI: 10.1016/J.Ymeth.2016.05.009  0.574
2016 Chen R, Subramanyam S, Elcock AH, Spies M, Wold MS. Dynamic binding of replication protein a is required for DNA repair. Nucleic Acids Research. PMID 27131385 DOI: 10.1093/Nar/Gkw339  0.595
2016 Boehm EM, Powers KT, Kondratick CM, Spies M, Houtman JC, Washington MT. The PCNA-Interacting Protein (PIP) Motif of DNA Polymerase η Mediates its Interaction with the C-Terminal Domain of Rev1. The Journal of Biological Chemistry. PMID 26903512 DOI: 10.1074/Jbc.M115.697938  0.52
2016 Xu Z, Gakhar L, Boehm E, Washington T, Spies M, Fuentes EJ. Insights into the Autoinhibition Mechanism of the Tiam1 Guanine Nucleotide Exchange Factor Biophysical Journal. 110: 206a. DOI: 10.1016/J.Bpj.2015.11.1149  0.642
2015 Spies M, Fishel R. Mismatch repair during homologous and homeologous recombination. Cold Spring Harbor Perspectives in Biology. 7: a022657. PMID 25731766 DOI: 10.1101/Cshperspect.A022657  0.516
2015 Stekas B, Qi Z, Honda M, Spies M, Chemla Y. The Effect of Single-Stranded DNA Binding Protein RPA2 on XPD Helicase Processivity Biophysical Journal. 108: 72a. DOI: 10.1016/J.Bpj.2014.11.429  0.569
2014 Ghoneim M, Spies M. Direct correlation of DNA binding and single protein domain motion via dual illumination fluorescence microscopy. Nano Letters. 14: 5920-31. PMID 25204359 DOI: 10.1021/Nl502890G  0.574
2014 Spies M. Fulfilling the dream of a perfect genome editing tool Proceedings of the National Academy of Sciences of the United States of America. 111: 10029-10030. PMID 24989506 DOI: 10.1073/Pnas.1408985111  0.529
2014 Spies M. Two steps forward, one step back: Determining XPD helicase mechanism by single-molecule fluorescence and high-resolution optical tweezers Dna Repair. 20: 58-70. PMID 24560558 DOI: 10.1016/J.Dnarep.2014.01.013  0.597
2014 Honda M, Okuno Y, Hengel SR, Martín-López JV, Cook CP, Amunugama R, Soukup RJ, Subramanyam S, Fishel R, Spies M. Mismatch repair protein hMSH2-hMSH6 recognizes mismatches and forms sliding clamps within a D-loop recombination intermediate. Proceedings of the National Academy of Sciences of the United States of America. 111: E316-25. PMID 24395779 DOI: 10.1073/Pnas.1312988111  0.519
2014 Ghoneim M, Spies M. Direct correlation of DNA binding and single protein domain motion via dual illumination fluorescence microscopy Nano Letters. 14: 5920-5931. DOI: 10.1021/nl502890g  0.499
2013 Murfuni I, Basile G, Subramanyam S, Malacaria E, Bignami M, Spies M, Franchitto A, Pichierri P. Survival of the replication checkpoint deficient cells requires MUS81-RAD52 function. Plos Genetics. 9: e1003910. PMID 24204313 DOI: 10.1371/Journal.Pgen.1003910  0.416
2013 Subramanyam S, Jones WT, Spies M, Spies MA. Contributions of the RAD51 N-terminal domain to BRCA2-RAD51 interaction. Nucleic Acids Research. 41: 9020-32. PMID 23935068 DOI: 10.1093/Nar/Gkt691  0.494
2013 Qi Z, Pugh RA, Spies M, Chemla YR. Sequence-dependent base pair stepping dynamics in XPD helicase unwinding. Elife. 2: e00334. PMID 23741615 DOI: 10.7554/Elife.00334  0.548
2013 Haghighat Jahromi A, Honda M, Zimmerman SC, Spies M. Single-molecule study of the CUG repeat-MBNL1 interaction and its inhibition by small molecules. Nucleic Acids Research. 41: 6687-97. PMID 23661680 DOI: 10.1093/Nar/Gkt330  0.359
2013 Masuda-Ozawa T, Hoang T, Seo YS, Chen LF, Spies M. Single-molecule sorting reveals how ubiquitylation affects substrate recognition and activities of FBH1 helicase. Nucleic Acids Research. 41: 3576-87. PMID 23393192 DOI: 10.1093/Nar/Gkt056  0.577
2013 Spies M. DNA repair: Trust but verify Current Biology. 23. PMID 23391386 DOI: 10.1016/J.Cub.2012.12.019  0.513
2013 Spies M. There and back again: New single-molecule insights in the motion of DNA repair proteins Current Opinion in Structural Biology. 23: 154-160. PMID 23260129 DOI: 10.1016/J.Sbi.2012.11.008  0.575
2013 Beyer DC, Ghoneim MK, Spies M. Structure and mechanisms of SF2 DNA helicases Advances in Experimental Medicine and Biology. 767: 47-73. PMID 23161006 DOI: 10.1007/978-1-4614-5037-5_3  0.499
2013 Wu CG, Spies M. Overview: what are helicases? Advances in Experimental Medicine and Biology. 767: 1-16. PMID 23161004 DOI: 10.1007/978-1-4614-5037-5_1  0.526
2013 Qi Z, Honda M, Spies M, Chemla YR. Regulation of XPD Helicase by the Single-Stranded DNA Binding Protein RPA2 Biophysical Journal. 104: 75a. DOI: 10.1016/J.Bpj.2012.11.453  0.609
2013 Ghoneim MK, Spies M. Single-Molecule Analysis of Conformational Transitions in XPD Helicase Biophysical Journal. 104: 61a. DOI: 10.1016/J.Bpj.2012.11.375  0.538
2012 Pugh RA, Wu CG, Spies M. Regulation of translocation polarity by helicase domain 1 in SF2B helicases. The Embo Journal. 31: 503-14. PMID 22081110 DOI: 10.1038/Emboj.2011.412  0.453
2012 Jiang T, Spies M, Tajkhorshid E. Characterizing an Intermediate State Between Inactive and Active States of RecA Biophysical Journal. 102: 282a. DOI: 10.1016/J.Bpj.2011.11.1561  0.533
2012 Spies M. Single-Molecule Sorting of DNA Repair Machines Biophysical Journal. 102: 233a. DOI: 10.1016/J.Bpj.2011.11.1280  0.572
2011 Honda M, Okuno Y, Yoo J, Ha T, Spies M. Tyrosine phosphorylation enhances RAD52-mediated annealing by modulating its DNA binding. The Embo Journal. 30: 3368-82. PMID 21804533 DOI: 10.1038/Emboj.2011.238  0.542
2011 Grimme JM, Spies M. FRET-based assays to monitor DNA binding and annealing by Rad52 recombination mediator protein. Methods in Molecular Biology (Clifton, N.J.). 745: 463-83. PMID 21660711 DOI: 10.1007/978-1-61779-129-1_27  0.588
2011 Qi Z, Pugh RA, Spies M, Chemla YR. Displaced Strand Regulation of Facxpd Helicase Activity Biophysical Journal. 100: 73a. DOI: 10.1016/J.Bpj.2010.12.599  0.561
2010 Spies M, Ha T. Inching over hurdles: How DNA helicases move on crowded lattices Cell Cycle. 9: 1742-1749. PMID 20436294 DOI: 10.4161/Cc.9.9.11469  0.584
2010 Pugh RA, Honda M, Spies M. Ensemble and single-molecule fluorescence-based assays to monitor DNA binding, translocation, and unwinding by iron-sulfur cluster containing helicases. Methods (San Diego, Calif.). 51: 313-21. PMID 20167274 DOI: 10.1016/J.Ymeth.2010.02.014  0.537
2010 Grimme JM, Honda M, Wright R, Okuno Y, Rothenberg E, Mazin AV, Ha T, Spies M. Human Rad52 binds and wraps single-stranded DNA and mediates annealing via two hRad52-ssDNA complexes Nucleic Acids Research. 38: 2917-2930. PMID 20081207 DOI: 10.1093/Nar/Gkp1249  0.551
2009 Honda M, Park J, Pugh RA, Ha T, Spies M. Single-molecule analysis reveals differential effect of ssDNA-binding proteins on DNA translocation by XPD helicase. Molecular Cell. 35: 694-703. PMID 19748362 DOI: 10.1016/J.Molcel.2009.07.003  0.573
2008 Rothenberg E, Grimme JM, Spies M, Ha T. Human Rad52-mediated homology search and annealing occurs by continuous interactions between overlapping nucleoprotein complexes. Proceedings of the National Academy of Sciences of the United States of America. 105: 20274-9. PMID 19074292 DOI: 10.1073/Pnas.0810317106  0.525
2008 Pugh RA, Lin Y, Eller C, Leesley H, Cann IK, Spies M. Ferroplasma acidarmanus RPA2 facilitates efficient unwinding of forked DNA substrates by monomers of FacXPD helicase. Journal of Molecular Biology. 383: 982-98. PMID 18801373 DOI: 10.1016/J.Jmb.2008.09.001  0.585
2008 Lin Y, Lin LJ, Sriratana P, Coleman K, Ha T, Spies M, Cann IK. Engineering of functional replication protein a homologs based on insights into the evolution of oligonucleotide/oligosaccharide-binding folds. Journal of Bacteriology. 190: 5766-80. PMID 18586938 DOI: 10.1128/Jb.01930-07  0.486
2008 Pugh RA, Honda M, Leesley H, Thomas A, Lin Y, Nilges MJ, Cann IK, Spies M. The iron-containing domain is essential in Rad3 helicases for coupling of ATP hydrolysis to DNA translocation and for targeting the helicase to the single-stranded DNA-double-stranded DNA junction. The Journal of Biological Chemistry. 283: 1732-43. PMID 18029358 DOI: 10.1074/Jbc.M707064200  0.528
2007 Spies M, Amitani I, Baskin RJ, Kowalczykowski SC. RecBCD Enzyme Switches Lead Motor Subunits in Response to χ Recognition Cell. 131: 694-705. PMID 18022364 DOI: 10.1016/J.Cell.2007.09.023  0.36
2006 Spies M, Kowalczykowski SC. The RecA binding locus of RecBCD is a general domain for recruitment of DNA strand exchange proteins Molecular Cell. 21: 573-580. PMID 16483938 DOI: 10.1016/J.Molcel.2006.01.007  0.573
2005 Spies M, Dillingham MS, Kowalczykowski SC. Translocation by the RecB motor is an absolute requirement for {chi}-recognition and RecA protein loading by RecBCD enzyme. The Journal of Biological Chemistry. 280: 37078-87. PMID 16041060 DOI: 10.1074/Jbc.M505521200  0.399
2003 Spies M, Bianco PR, Dillingham MS, Handa N, Baskin RJ, Kowalczykowski SC. A molecular throttle: The recombination hotspot χ controls DNA translocation by the RecBCD helicase Cell. 114: 647-654. PMID 13678587 DOI: 10.1016/S0092-8674(03)00681-0  0.478
2003 Dillingham MS, Spies M, Kowalczykowski SC. RecBCD enzyme is a bipolar DNA helicase Nature. 423: 893-897. PMID 12815438 DOI: 10.1038/Nature01673  0.564
Show low-probability matches.