Marialuisa Melli - Related publications

Università di Bologna, Bologna, Italy 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Warman EA, Singh SS, Gubieda AG, Grainger DC. A non-canonical promoter element drives spurious transcription of horizontally acquired bacterial genes. Nucleic Acids Research. PMID 32297955 DOI: 10.1093/nar/gkaa244   
2020 Sui H, Chen Q, Imamichi T. A pull-down assay using DNA/RNA-conjugated beads with a customized competition strategy: An effective approach to identify DNA/RNA binding proteins. Methodsx. 7: 100890. PMID 32373481 DOI: 10.1016/j.mex.2020.100890   
2020 Chen LQ, Zhao WS, Luo GZ. Mapping and editing of nucleic acid modifications. Computational and Structural Biotechnology Journal. 18: 661-667. PMID 32257049 DOI: 10.1016/j.csbj.2020.03.010   
2020 Turner MB, Purse BW. Fluorescent Tricyclic Cytidine Analogues as Substrates for Retroviral Reverse Transcriptases. Chempluschem. 85: 855-865. PMID 32378814 DOI: 10.1002/cplu.202000140   
2020 Alecki C, Chiwara V, Sanz LA, Grau D, Arias Pérez O, Boulier EL, Armache KJ, Chédin F, Francis NJ. RNA-DNA strand exchange by the Drosophila Polycomb complex PRC2. Nature Communications. 11: 1781. PMID 32286294 DOI: 10.1038/s41467-020-15609-x   
2020 Lin J, Feng M, Zhang H, She Q. Characterization of a novel type III CRISPR-Cas effector provides new insights into the allosteric activation and suppression of the Cas10 DNase. Cell Discovery. 6: 29. PMID 32411384 DOI: 10.1038/s41421-020-0160-4   
2020 Seto K, Masago K, Fujita S, Haneda M, Horio Y, Hida T, Kuroda H, Hosoda W, Okubo KI. Targeted RNA sequencing with touch imprint cytology samples for non-small cell lung cancer patients. Thoracic Cancer. PMID 32372482 DOI: 10.1111/1759-7714.13460   
2020 Zhao LY, Song J, Liu Y, Song CX, Yi C. Mapping the epigenetic modifications of DNA and RNA. Protein & Cell. PMID 32440736 DOI: 10.1007/s13238-020-00733-7   
2020 Zhang J, Teramoto T, Qiu C, Wine RN, Gonzalez LE, Baserga SJ, Hall TM. Nop9 recognizes structured and single-stranded RNA elements of pre-ribosomal RNA. Rna (New York, N.Y.). PMID 32371454 DOI: 10.1261/rna.075416.120   
2020 Small ID, Schallenberg-Rüdinger M, Takenaka M, Mireau H, Ostersetzer-Biran O. Plant organellar RNA editing: what 30 years of research has revealed. The Plant Journal : For Cell and Molecular Biology. 101: 1040-1056. PMID 31630458 DOI: 10.1111/tpj.14578   
2020 Arakawa S, Kamizaki K, Kuwana Y, Kataoka N, Naoe C, Takemoto C, Yokogawa T, Hori H. Application of solid-phase DNA probe method with cleavage by deoxyribozyme for analysis of long non-coding RNAs. Journal of Biochemistry. PMID 32289169 DOI: 10.1093/jb/mvaa048   
2020 Srinivasan KA, Virdee SK, McArthur AG. Strandedness during cDNA synthesis, the stranded parameter in htseq-count and analysis of RNA-Seq data. Briefings in Functional Genomics. PMID 32415774 DOI: 10.1093/bfgp/elaa010   
2020 Zhang JY, Xia Y, Hao YH, Tan Z. DNA:RNA hybrid G-quadruplex formation upstream of transcription start site. Scientific Reports. 10: 7429. PMID 32366914 DOI: 10.1038/s41598-020-64117-x   
2020 Bai M, Cao X, Huang W, Chen F, Zhao Y, Xue J, Li Y, Cheng Y, Zhang L, Zhao Y. Visualizing Newly Synthesized RNA by Bioorthogonal Labeling-primed DNA Amplification. Analytical Chemistry. PMID 32410443 DOI: 10.1021/acs.analchem.0c01161   
2020 Langeberg CJ, Welch WRW, McGuire JV, Ashby A, Jackson AD, Chapman EG. Biochemical Characterization of Yeast Xrn1. Biochemistry. PMID 32251580 DOI: 10.1021/acs.biochem.9b01035   
2020 Welden JR, Pawluchin A, van Doorn J, Stamm S. Use of Alu Element Containing Minigenes to Analyze Circular RNAs. Journal of Visualized Experiments : Jove. PMID 32225139 DOI: 10.3791/59760   
2020 Gao W, Xu J, Lian G, Wang X, Gong X, Zhou D, Chang J. A novel analytical principle using AP site-mediated T7 RNA polymerase transcription regulation for sensing uracil-DNA glycosylase activity. The Analyst. PMID 32432603 DOI: 10.1039/d0an00509f   
2020 Poppleton E, Bohlin J, Matthies M, Sharma S, Zhang F, Šulc P. Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation. Nucleic Acids Research. PMID 32449920 DOI: 10.1093/nar/gkaa417   
2020 Thieffry A, Vigh ML, Bornholdt J, Ivanov M, Brodersen P, Sandelin A. Characterization of Arabidopsis thaliana promoter Bidirectionality and Antisense RNAs by Depletion of Nuclear RNA Decay Pathways. The Plant Cell. PMID 32213639 DOI: 10.1105/tpc.19.00815   
2020 Kuciński J, Chamera S, Kmera A, Rowley MJ, Fujii S, Khurana P, Nowotny M, Wierzbicki AT. Evolutionary history and activity of RNase H1-like proteins in Arabidopsis thaliana. Plant & Cell Physiology. PMID 32191307 DOI: 10.1093/pcp/pcaa040   
2020 Gebrezgiabher M, Zalloum WA, Clarke DJ, Miles SM, Fedorova AA, Zenkova MA, Bichenkova EV. RNA knockdown by synthetic peptidyl-oligonucleotide ribonucleases: behavior of recognition and cleavage elements under physiological conditions. Journal of Biomolecular Structure & Dynamics. 1-26. PMID 32248755 DOI: 10.1080/07391102.2020.1751711   
2020 Holmes ZE, Hamilton DJ, Hwang T, Parsonnet NV, Rinn JL, Wuttke DS, Batey RT. The Sox2 transcription factor binds RNA. Nature Communications. 11: 1805. PMID 32286318 DOI: 10.1038/s41467-020-15571-8   
2020 Kudla G, Wan Y, Helwak A. RNA Conformation Capture by Proximity Ligation. Annual Review of Genomics and Human Genetics. PMID 32320281 DOI: 10.1146/annurev-genom-120219-073756   
2020 Bao HL, Xu Y. Telomeric DNA-RNA-hybrid G-quadruplex exists in environmental conditions of HeLa cells. Chemical Communications (Cambridge, England). PMID 32396161 DOI: 10.1039/d0cc02053b   
2020 Barbieri I, Kouzarides T. Role of RNA modifications in cancer. Nature Reviews. Cancer. PMID 32300195 DOI: 10.1038/s41568-020-0253-2   
2020 Pérez-Calero C, Bayona-Feliu A, Xue X, Barroso SI, Muñoz S, González-Basallote VM, Sung P, Aguilera A. UAP56/DDX39B is a major cotranscriptional RNA-DNA helicase that unwinds harmful R loops genome-wide. Genes & Development. PMID 32439635 DOI: 10.1101/gad.336024.119   
2020 Kanodia P, Prasanth KR, Roa-Linares VC, Bradrick SS, Garcia-Blanco MA, Miller WA. A rapid and simple quantitative method for specific Detection of Smaller Co-terminal RNA by PCR (DeSCo-PCR): Application to the detection of viral subgenomic RNAs. Rna (New York, N.Y.). PMID 32238481 DOI: 10.1261/rna.074963.120   
2020 Wu T, Lyu R, You Q, He C. Kethoxal-assisted single-stranded DNA sequencing captures global transcription dynamics and enhancer activity in situ. Nature Methods. PMID 32251394 DOI: 10.1038/s41592-020-0797-9   
2020 Burgess D, Li H, Zhao M, Kim SY, Lisch D. Silencing of Elements in Maize Involves Distinct Populations of Small RNAs and Distinct Patterns of DNA Methylation. Genetics. PMID 32229532 DOI: 10.1534/genetics.120.303033   
2020 Singh RK, Singh D, Yadava A, Srivastava AK. Molecular fossils "pseudogenes" as functional signature in biological system. Genes & Genomics. PMID 32277362 DOI: 10.1007/s13258-020-00935-7   
2020 Boque-Sastre R, Guil S. A lncRNA Decoy Predicts Sensitivity to Cisplatin. Trends in Molecular Medicine. 26: 352-354. PMID 32277928 DOI: 10.1016/j.molmed.2020.01.015   
2020 Mehta AR, Selvaraj BT, Barton SK, McDade K, Abrahams S, Chandran S, Smith C, Gregory JM. Improved detection of RNA foci in amyotrophic lateral sclerosis post-mortem tissue using BaseScope™ shows a lack of association with cognitive dysfunction. Brain Communications. 2: fcaa009. PMID 32226938 DOI: 10.1093/braincomms/fcaa009   
2020 Qi X, Liu X, Matiski L, Rodriguez Del Villar R, Yip T, Zhang F, Sokalingam S, Jiang S, Liu L, Yan H, Chang Y. RNA Origami Nanostructures for Potent and Safe Anti-Cancer Immunotherapy. Acs Nano. PMID 32275389 DOI: 10.1021/acsnano.0c00602   
2020 Kim D, Lee JY, Yang JS, Kim JW, Kim VN, Chang H. The Architecture of SARS-CoV-2 Transcriptome. Cell. PMID 32330414 DOI: 10.1016/j.cell.2020.04.011   
2020 Glazier DA, Liao J, Roberts B, Li X, Yang K, Stevens CM, Tang W. Chemical Synthesis and Biological Application of Modified Oligonucleotides. Bioconjugate Chemistry. PMID 32227878 DOI: 10.1021/acs.bioconjchem.0c00060   
2020 Chen H, Cheng K, Liu X, An R, Komiyama M, Liang X. Preferential production of RNA rings by T4 RNA ligase 2 without any splint through rational design of precursor strand. Nucleic Acids Research. PMID 32232357 DOI: 10.1093/nar/gkaa181   
2020 Browne DJ, Brady JL, Waardenberg AJ, Loiseau C, Doolan DL. An Analytically and Diagnostically Sensitive RNA Extraction and RT-qPCR Protocol for Peripheral Blood Mononuclear Cells. Frontiers in Immunology. 11: 402. PMID 32265908 DOI: 10.3389/fimmu.2020.00402   
2020 Thao TTN, Labroussaa F, Ebert N, V'kovski P, Stalder H, Portmann J, Kelly J, Steiner S, Holwerda M, Kratzel A, Gultom M, Schmied K, Laloli L, Hüsser L, Wider M, et al. Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform. Nature. PMID 32365353 DOI: 10.1038/s41586-020-2294-9   
2020 Huang D, Kim DS, Kraus WL. Specific Binding of snoRNAs to PARP-1 Promotes NAD-Dependent Catalytic Activation. Biochemistry. PMID 32293172 DOI: 10.1021/acs.biochem.0c00100   
2020 Ma X, Yin X, Tang Z, Ito H, Shao C, Meng Y, Xie T. The RNA degradome: a precious resource for deciphering RNA processing and regulation codes in plants. Rna Biology. 1-5. PMID 32338184 DOI: 10.1080/15476286.2020.1757898   
2020 Chen Y, Wu F, Chen Z, He Z, Wei Q, Zeng W, Chen K, Xiao F, Yuan Y, Weng X, Zhou Y, Zhou X. Acrylonitrile-Mediated Nascent RNA Sequencing for Transcriptome-Wide Profiling of Cellular RNA Dynamics. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 7: 1900997. PMID 32328408 DOI: 10.1002/advs.201900997   
2020 Singh J, Pikaard CS. Reconstitution of siRNA Biogenesis In Vitro: Novel Reaction Mechanisms and RNA Channeling in the RNA-Directed DNA Methylation Pathway. Cold Spring Harbor Symposia On Quantitative Biology. PMID 32350049 DOI: 10.1101/sqb.2019.84.039842   
2020 Merritt CR, Ong GT, Church SE, Barker K, Danaher P, Geiss G, Hoang M, Jung J, Liang Y, McKay-Fleisch J, Nguyen K, Norgaard Z, Sorg K, Sprague I, Warren C, et al. Multiplex digital spatial profiling of proteins and RNA in fixed tissue. Nature Biotechnology. 38: 586-599. PMID 32393914 DOI: 10.1038/s41587-020-0472-9   
2020 Widner DL, Harris KA, Corey L, Breaker RR. OapB forms a high-affinity complex with the P13 region of the noncoding RNA OLE. The Journal of Biological Chemistry. PMID 32376692 DOI: 10.1074/jbc.RA120.012676   
2020 Kriel NL, Heunis T, Sampson SL, Gey van Pittius NC, Williams MJ, Warren RM. Identifying nucleic acid-associated proteins in Mycobacterium smegmatis by mass spectrometry-based proteomics. Bmc Molecular and Cell Biology. 21: 19. PMID 32293251 DOI: 10.1186/s12860-020-00261-6   
2020 Pereira-Silva M, Jarak I, Alvarez-Lorenzo C, Concheiro A, Santos AC, Veiga F, Figueiras A. Micelleplexes as nucleic acid delivery systems for cancer-targeted therapies. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 32353488 DOI: 10.1016/j.jconrel.2020.04.041   
2020 Lin P, Qin S, Pu Q, Wang Z, Wu Q, Gao P, Schettler J, Guo K, Li R, Li G, Huang C, Wei Y, Gao GF, Jiang J, Wu M. CRISPR-Cas13 Inhibitors Block RNA Editing in Bacteria and Mammalian Cells. Molecular Cell. PMID 32348779 DOI: 10.1016/j.molcel.2020.03.033   
2020 Wu Y, Tang Y, Dong X, Zheng YY, Haruehanroengra P, Mao S, Lin Q, Sheng J. RNA Phosphorothioate Modification in Prokaryotes and Eukaryotes. Acs Chemical Biology. PMID 32275390 DOI: 10.1021/acschembio.0c00163   
2020 Kamura T, Katsuda Y, Kitamura Y, Ihara T. G-quadruplexes in mRNA: A key structure for biological function. Biochemical and Biophysical Research Communications. PMID 32209257 DOI: 10.1016/j.bbrc.2020.02.168   
2020 Herrmann A, Paul A, Warszawik EM, Loznik M, Boersma AJ. Modular and Versatile trans-Encoded Genetic Switches. Angewandte Chemie (International Ed. in English). PMID 32352201 DOI: 10.1002/anie.202001372