Daniel S. Rokhsar - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA 
Area:
Computation & Theory
Website:
http://www.physics.berkeley.edu/research/faculty/Rokhsar.html

167 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gehrke AR, Neverett E, Luo YJ, Brandt A, Ricci L, Hulett RE, Gompers A, Ruby JG, Rokhsar DS, Reddien PW, Srivastava M. Acoel genome reveals the regulatory landscape of whole-body regeneration. Science (New York, N.Y.). 363. PMID 30872491 DOI: 10.1126/science.aau6173  0.52
2016 Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, ... ... Rokhsar DS, et al. Genome evolution in the allotetraploid frog Xenopus laevis. Nature. 538: 336-343. PMID 27762356 DOI: 10.1038/nature19840  0.4
2016 Farley EK, Olson KM, Zhang W, Rokhsar DS, Levine MS. Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers. Proceedings of the National Academy of Sciences of the United States of America. PMID 27155014 DOI: 10.1073/pnas.1605085113  1
2016 Bredeson JV, Lyons JB, Prochnik SE, Wu GA, Ha CM, Edsinger-Gonzales E, Grimwood J, Schmutz J, Rabbi IY, Egesi C, Nauluvula P, Lebot V, Ndunguru J, Mkamilo G, Bart RS, ... ... Rokhsar DS, et al. Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Nature Biotechnology. PMID 27088722 DOI: 10.1038/nbt.3535  1
2016 Putnam NH, O'Connell BL, Stites JC, Rice BJ, Blanchette M, Calef R, Troll CJ, Fields A, Hartley PD, Sugnet CW, Haussler D, Rokhsar DS, Green RE. Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. Genome Research. PMID 26848124 DOI: 10.1101/gr.193474.115  1
2015 Simakov O, Kawashima T, Marlétaz F, Jenkins J, Koyanagi R, Mitros T, Hisata K, Bredeson J, Shoguchi E, Gyoja F, Yue JX, Chen YC, Freeman RM, Sasaki A, Hikosaka-Katayama T, ... ... Rokhsar DS, et al. Hemichordate genomes and deuterostome origins. Nature. PMID 26580012 DOI: 10.1038/nature16150  1
2015 Farley EK, Olson KM, Zhang W, Brandt AJ, Rokhsar DS, Levine MS. Suboptimization of developmental enhancers. Science (New York, N.Y.). 350: 325-8. PMID 26472909 DOI: 10.1126/science.aac6948  1
2015 Albertin CB, Simakov O, Mitros T, Wang ZY, Pungor JR, Edsinger-Gonzales E, Brenner S, Ragsdale CW, Rokhsar DS. The octopus genome and the evolution of cephalopod neural and morphological novelties. Nature. 524: 220-4. PMID 26268193 DOI: 10.1038/nature14668  1
2015 Glazer AM, Killingbeck EE, Mitros T, Rokhsar DS, Miller CT. Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing. G3 (Bethesda, Md.). 5: 1463-72. PMID 26044731 DOI: 10.1534/g3.115.017905  1
2015 Lowe CJ, Clarke DN, Medeiros DM, Rokhsar DS, Gerhart J. The deuterostome context of chordate origins. Nature. 520: 456-65. PMID 25903627 DOI: 10.1038/nature14434  1
2015 Matsuda Y, Uno Y, Kondo M, Gilchrist MJ, Zorn AM, Rokhsar DS, Schmid M, Taira M. A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis. Cytogenetic and Genome Research. PMID 25871511 DOI: 10.1159/000381292  1
2015 Chapman JA, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Sehgal S, Oliker L, Schmutz J, Yelick KA, Scholz U, Waugh R, Poland JA, ... ... Rokhsar DS, et al. A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome. Genome Biology. 16: 26. PMID 25637298 DOI: 10.1186/s13059-015-0582-8  1
2015 Lowry DB, Hernandez K, Taylor SH, Meyer E, Logan TL, Barry KW, Chapman JA, Rokhsar DS, Schmutz J, Juenger TE. The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii. The New Phytologist. 205: 402-14. PMID 25252269 DOI: 10.1111/nph.13027  1
2015 Alaba OA, Bredeson JV, Egesi CN, Esuma W, Ezenwaka L, Ferguson ME, Ha CM, Hall M, Herselman L, Ikpan A, Kafiriti E, Kanju E, Kapinga F, Karugu A, Kawuki R, ... ... Rokhsar DS, et al. High-resolution linkage map and chromosome-scale genome assembly for cassava (Manihot esculenta Crantz) from 10 populations G3: Genes, Genomes, Genetics. 5: 133-144. DOI: 10.1534/g3.114.015008  1
2014 Satoh N, Rokhsar D, Nishikawa T. Chordate evolution and the three-phylum system. Proceedings. Biological Sciences / the Royal Society. 281: 20141729. PMID 25232138 DOI: 10.1098/rspb.2014.1729  1
2014 Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, ... ... Rokhsar DS, et al. The genome of Eucalyptus grandis. Nature. 510: 356-62. PMID 24919147 DOI: 10.1038/nature13308  0.32
2014 Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, ... ... Rokhsar D, et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology. 32: 656-62. PMID 24908277 DOI: 10.1038/nbt.2906  1
2014 Schmutz J, McClean PE, Mamidi S, Wu GA, Cannon SB, Grimwood J, Jenkins J, Shu S, Song Q, Chavarro C, Torres-Torres M, Geffroy V, Moghaddam SM, Gao D, Abernathy B, ... ... Rokhsar DS, et al. A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics. 46: 707-13. PMID 24908249 DOI: 10.1038/ng.3008  1
2014 Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo MC, Lomsadze A, Borodovsky M, Kerstetter RA, Shanklin J, Byrant DW, Mockler TC, Appenroth KJ, Grimwood J, Jenkins J, ... ... Rokhsar D, et al. The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nature Communications. 5: 3311. PMID 24548928 DOI: 10.1038/ncomms4311  1
2014 Lukaszewski AJ, Alberti A, Sharpe A, Kilian A, Stanca AM, Keller B, Clavijo BJ, Friebe B, Gill B, Wulff B, Chapman B, Steuernagel B, Feuillet C, Viseux C, Pozniak C, ... Rokhsar DS, et al. A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome Science. 345. DOI: 10.1126/science.1251788  1
2014 Georganas E, Buluç A, Chapman J, Oliker L, Rokhsar D, Yelick K. Parallel de Bruijn Graph Construction and Traversal for de Novo Genome Assembly International Conference For High Performance Computing, Networking, Storage and Analysis, Sc. 2015: 437-448. DOI: 10.1109/SC.2014.41  1
2014 Strnadová V, Buluc A, Chapman J, Gilbert JR, Gonzalez J, Jegelka S, Rokhsar D, Oliker L. Efficient and accurate clustering for large-scale genetic mapping Proceedings - 2014 Ieee International Conference On Bioinformatics and Biomedicine, Ieee Bibm 2014. 3-10. DOI: 10.1109/BIBM.2014.6999119  1
2013 Barling A, Swaminathan K, Mitros T, James BT, Morris J, Ngamboma O, Hall MC, Kirkpatrick J, Alabady M, Spence AK, Hudson ME, Rokhsar DS, Moose SP. A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes. Bmc Genomics. 14: 864. PMID 24320546 DOI: 10.1186/1471-2164-14-864  1
2013 Hellsten U, Wright KM, Jenkins J, Shu S, Yuan Y, Wessler SR, Schmutz J, Willis JH, Rokhsar DS. Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing. Proceedings of the National Academy of Sciences of the United States of America. 110: 19478-82. PMID 24225854 DOI: 10.1073/pnas.1319032110  1
2013 Mascher M, Muehlbauer GJ, Rokhsar DS, Chapman J, Schmutz J, Barry K, Muñoz-Amatriaín M, Close TJ, Wise RP, Schulman AH, Himmelbach A, Mayer KF, Scholz U, Poland JA, Stein N, et al. Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ). The Plant Journal : For Cell and Molecular Biology. 76: 718-27. PMID 23998490 DOI: 10.1111/tpj.12319  1
2013 Slotte T, Hazzouri KM, Ã…gren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Rokhsar D, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/ng.2669  1
2013 Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, ... ... Rokhsar DS, et al. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature Genetics. 45: 487-94. PMID 23525075 DOI: 10.1038/ng.2586  1
2013 Geraldes A, Difazio SP, Slavov GT, Ranjan P, Muchero W, Hannemann J, Gunter LE, Wymore AM, Grassa CJ, Farzaneh N, Porth I, McKown AD, Skyba O, Li E, Fujita M, ... ... Rokhsar D, et al. A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species. Molecular Ecology Resources. 13: 306-23. PMID 23311503 DOI: 10.1111/1755-0998.12056  1
2013 Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, ... ... Rokhsar DS, et al. Insights into bilaterian evolution from three spiralian genomes. Nature. 493: 526-31. PMID 23254933 DOI: 10.1038/nature11696  1
2012 Freeman R, Ikuta T, Wu M, Koyanagi R, Kawashima T, Tagawa K, Humphreys T, Fang GC, Fujiyama A, Saiga H, Lowe C, Worley K, Jenkins J, Schmutz J, Kirschner M, ... Rokhsar D, et al. Identical genomic organization of two hemichordate hox clusters. Current Biology : Cb. 22: 2053-8. PMID 23063438 DOI: 10.1016/j.cub.2012.08.052  1
2012 Slavov GT, DiFazio SP, Martin J, Schackwitz W, Muchero W, Rodgers-Melnick E, Lipphardt MF, Pennacchio CP, Hellsten U, Pennacchio LA, Gunter LE, Ranjan P, Vining K, Pomraning KR, Wilhelm LJ, ... ... Rokhsar D, et al. Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa. The New Phytologist. 196: 713-25. PMID 22861491 DOI: 10.1111/j.1469-8137.2012.04258.x  1
2012 Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, ... ... Rokhsar D, et al. Reference genome sequence of the model plant Setaria. Nature Biotechnology. 30: 555-61. PMID 22580951 DOI: 10.1038/nbt.2196  1
2012 Swaminathan K, Chae WB, Mitros T, Varala K, Xie L, Barling A, Glowacka K, Hall M, Jezowski S, Ming R, Hudson M, Juvik JA, Rokhsar DS, Moose SP. A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy. Bmc Genomics. 13: 142. PMID 22524439 DOI: 10.1186/1471-2164-13-142  1
2012 Prochnik S, Marri PR, Desany B, Rabinowicz PD, Kodira C, Mohiuddin M, Rodriguez F, Fauquet C, Tohme J, Harkins T, Rokhsar DS, Rounsley S. The Cassava Genome: Current Progress, Future Directions. Tropical Plant Biology. 5: 88-94. PMID 22523606 DOI: 10.1007/s12042-011-9088-z  1
2012 Sharma MK, Sharma R, Cao P, Jenkins J, Bartley LE, Qualls M, Grimwood J, Schmutz J, Rokhsar D, Ronald PC. A genome-wide survey of switchgrass genome structure and organization. Plos One. 7: e33892. PMID 22511929 DOI: 10.1371/journal.pone.0033892  1
2012 Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, Arús P, Shulaev V, Verde I, Morgante M, Rokhsar D, et al. Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies. Bmc Genomics. 13: 129. PMID 22475018 DOI: 10.1186/1471-2164-13-129  1
2012 Grigoriev IV, Nordberg H, Shabalov I, Aerts A, Cantor M, Goodstein D, Kuo A, Minovitsky S, Nikitin R, Ohm RA, Otillar R, Poliakov A, Ratnere I, Riley R, Smirnova T, ... Rokhsar D, et al. The Genome Portal of the Department of Energy Joint Genome Institute Nucleic Acids Research. 40: D26-D32. PMID 22110030 DOI: 10.1093/nar/gkr947  1
2012 Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, Rokhsar DS. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Research. 40: D1178-86. PMID 22110026 DOI: 10.1093/nar/gkr944  1
2011 Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... Rokhsar DS, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/gr.126599.111  1
2011 Jiang Z, Michal JJ, Beckman KB, Lyons JB, Zhang M, Pan Z, Rokhsar DS, Harland RM. Development and initial characterization of a HAPPY panel for mapping the X. tropicalis genome. International Journal of Biological Sciences. 7: 1037-44. PMID 21912511  1
2011 Hellsten U, Aspden JL, Rio DC, Rokhsar DS. A segmental genomic duplication generates a functional intron. Nature Communications. 2: 454. PMID 21878908 DOI: 10.1038/ncomms1461  1
2011 Chapman JA, Ho I, Sunkara S, Luo S, Schroth GP, Rokhsar DS. Meraculous: de novo genome assembly with short paired-end reads. Plos One. 6: e23501. PMID 21876754 DOI: 10.1371/journal.pone.0023501  1
2010 Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, ... ... Rokhsar DS, et al. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466: 720-6. PMID 20686567 DOI: 10.1038/nature09201  1
2010 Taft RJ, Simons C, Nahkuri S, Oey H, Korbie DJ, Mercer TR, Holst J, Ritchie W, Wong JJ, Rasko JE, Rokhsar DS, Degnan BM, Mattick JS. Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nature Structural & Molecular Biology. 17: 1030-4. PMID 20622877 DOI: 10.1038/nsmb.1841  1
2010 Prochnik SE, Umen J, Nedelcu AM, Hallmann A, Miller SM, Nishii I, Ferris P, Kuo A, Mitros T, Fritz-Laylin LK, Hellsten U, Chapman J, Simakov O, Rensing SA, Terry A, ... ... Rokhsar DS, et al. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science (New York, N.Y.). 329: 223-6. PMID 20616280 DOI: 10.1126/science.1188800  1
2010 Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, ... ... Rokhsar DS, et al. The genome of the Western clawed frog Xenopus tropicalis. Science (New York, N.Y.). 328: 633-6. PMID 20431018 DOI: 10.1126/science.1183670  1
2010 Wang J, Roe B, Macmil S, Yu Q, Murray JE, Tang H, Chen C, Najar F, Wiley G, Bowers J, Van Sluys MA, Rokhsar DS, Hudson ME, Moose SP, Paterson AH, et al. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. Bmc Genomics. 11: 261. PMID 20416060 DOI: 10.1186/1471-2164-11-261  1
2010 Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, ... ... Rokhsar DS, et al. The dynamic genome of Hydra. Nature. 464: 592-6. PMID 20228792 DOI: 10.1038/nature08830  1
2010 Fritz-Laylin LK, Prochnik SE, Ginger ML, Dacks JB, Carpenter ML, Field MC, Kuo A, Paredez A, Chapman J, Pham J, Shu S, Neupane R, Cipriano M, Mancuso J, Tu H, ... ... Rokhsar DS, et al. The genome of Naegleria gruberi illuminates early eukaryotic versatility. Cell. 140: 631-42. PMID 20211133 DOI: 10.1016/j.cell.2010.01.032  1
2010 Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/nature08747  1
2010 Swaminathan K, Alabady MS, Varala K, De Paoli E, Ho I, Rokhsar DS, Arumuganathan AK, Ming R, Green PJ, Meyers BC, Moose SP, Hudson ME. Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses. Genome Biology. 11: R12. PMID 20128909 DOI: 10.1186/gb-2010-11-2-r12  1
2010 Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, Liu L, Vullaganti D, Kucuktas H, Murdock C, Small BC, ... ... Rokhsar D, et al. Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies. Genome Biology. 11: R8. PMID 20096101 DOI: 10.1186/gb-2010-11-1-r8  1
2010 Srivastava M, Larroux C, Lu DR, Mohanty K, Chapman J, Degnan BM, Rokhsar DS. Early evolution of the LIM homeobox gene family. Bmc Biology. 8: 4. PMID 20082688 DOI: 10.1186/1741-7007-8-4  1
2010 Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, ... ... Rokhsar D, et al. Genome sequence of the palaeopolyploid soybean. Nature. 463: 178-83. PMID 20075913 DOI: 10.1038/nature08670  1
2010 Jackson DJ, McDougall C, Woodcroft B, Moase P, Rose RA, Kube M, Reinhardt R, Rokhsar DS, Montagnani C, Joubert C, Piquemal D, Degnan BM. Parallel evolution of nacre building gene sets in molluscs. Molecular Biology and Evolution. 27: 591-608. PMID 19915030 DOI: 10.1093/molbev/msp278  1
2009 Kawashima T, Kawashima S, Tanaka C, Murai M, Yoneda M, Putnam NH, Rokhsar DS, Kanehisa M, Satoh N, Wada H. Domain shuffling and the evolution of vertebrates. Genome Research. 19: 1393-403. PMID 19443856 DOI: 10.1101/gr.087072.108  1
2009 Jiang Z, Rokhsar DS, Harland RM. Old can be new again: HAPPY whole genome sequencing, mapping and assembly. International Journal of Biological Sciences. 5: 298-303. PMID 19381348  1
2009 Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, ... ... Rokhsar D, et al. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences of the United States of America. 106: 1954-9. PMID 19193860 DOI: 10.1073/pnas.0809575106  1
2009 Marlow HQ, Srivastava M, Matus DQ, Rokhsar D, Martindale MQ. Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian. Developmental Neurobiology. 69: 235-54. PMID 19170043 DOI: 10.1002/dneu.20698  1
2008 Sela DA, Chapman J, Adeuya A, Kim JH, Chen F, Whitehead TR, Lapidus A, Rokhsar DS, Lebrilla CB, German JB, Price NP, Richardson PM, Mills DA. The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome. Proceedings of the National Academy of Sciences of the United States of America. 105: 18964-9. PMID 19033196 DOI: 10.1073/pnas.0809584105  1
2008 Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, ... ... Rokhsar DS, et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456: 239-44. PMID 18923393 DOI: 10.1038/nature07410  1
2008 Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP. Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. Nature. 455: 1193-7. PMID 18830242 DOI: 10.1038/nature07415  1
2008 Horton AC, Mahadevan NR, Minguillon C, Osoegawa K, Rokhsar DS, Ruvinsky I, de Jong PJ, Logan MP, Gibson-Brown JJ. Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs. Development Genes and Evolution. 218: 613-28. PMID 18815807 DOI: 10.1007/s00427-008-0249-5  1
2008 Opperman CH, Bird DM, Williamson VM, Rokhsar DS, Burke M, Cohn J, Cromer J, Diener S, Gajan J, Graham S, Houfek TD, Liu Q, Mitros T, Schaff J, Schaffer R, et al. Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism. Proceedings of the National Academy of Sciences of the United States of America. 105: 14802-7. PMID 18809916 DOI: 10.1073/pnas.0805946105  1
2008 Smith DR, Quinlan AR, Peckham HE, Makowsky K, Tao W, Woolf B, Shen L, Donahue WF, Tusneem N, Stromberg MP, Stewart DA, Zhang L, Ranade SS, Warner JB, Lee CC, ... ... Rokhsar DS, et al. Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Research. 18: 1638-42. PMID 18775913 DOI: 10.1101/gr.077776.108  1
2008 Srivastava M, Begovic E, Chapman J, Putnam NH, Hellsten U, Kawashima T, Kuo A, Mitros T, Salamov A, Carpenter ML, Signorovitch AY, Moreno MA, Kamm K, Grimwood J, Schmutz J, ... ... Rokhsar DS, et al. The Trichoplax genome and the nature of placozoans. Nature. 454: 955-60. PMID 18719581 DOI: 10.1038/nature07191  1
2008 Schierwater B, Kamm K, Srivastava M, Rokhsar D, Rosengarten RD, Dellaporta SL. The early ANTP gene repertoire: insights from the placozoan genome. Plos One. 3: e2457. PMID 18716659 DOI: 10.1371/journal.pone.0002457  1
2008 Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernàndez J, Gibson-Brown JJ, Grigoriev IV, ... ... Rokhsar DS, et al. The amphioxus genome and the evolution of the chordate karyotype. Nature. 453: 1064-71. PMID 18563158 DOI: 10.1038/nature06967  1
2008 Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, ... ... Rokhsar DS, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Research. 18: 1100-11. PMID 18562680 DOI: 10.1101/gr.073676.107  1
2008 Hendrix DA, Hong JW, Zeitlinger J, Rokhsar DS, Levine MS. Promoter elements associated with RNA Pol II stalling in the Drosophila embryo. Proceedings of the National Academy of Sciences of the United States of America. 105: 7762-7. PMID 18505835 DOI: 10.1073/pnas.0802406105  1
2008 Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, ... ... Rokhsar DS, et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nature Biotechnology. 26: 553-60. PMID 18454138 DOI: 10.1038/nbt1403  1
2008 Larroux C, Luke GN, Koopman P, Rokhsar DS, Shimeld SM, Degnan BM. Genesis and expansion of metazoan transcription factor gene classes. Molecular Biology and Evolution. 25: 980-96. PMID 18296413 DOI: 10.1093/molbev/msn047  1
2008 King N, Westbrook MJ, Young SL, Kuo A, Abedin M, Chapman J, Fairclough S, Hellsten U, Isogai Y, Letunic I, Marr M, Pincus D, Putnam N, Rokas A, Wright KJ, ... ... Rokhsar D, et al. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature. 451: 783-8. PMID 18273011 DOI: 10.1038/nature06617  1
2008 Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EGJ, Grigoriev IV, Harris P, Jackson M, Kubicek CP, ... ... Rokhsar DS, et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) (Nature Biotechnology (2008) 26, (553-560)) Nature Biotechnology. 26: 1193. DOI: 10.1038/nbt1008-1193a  1
2008 Baker SE, Thykaer J, Adney WS, Brettin TS, Brockman FJ, D'haeseleer P, Martinez AD, Miller RM, Rokhsar DS, Schadt CW, Torok T, Tuskan G, Bennett J, Berka RM, Briggs SP, et al. Fungal genome sequencing and bioenergy Fungal Biology Reviews. 22: 1-5. DOI: 10.1016/j.fbr.2008.03.001  1
2008 Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DEK, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, ... ... Rokhsar DS, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology (Genome Research (2008) 18, (1100-1111)) Genome Research. 18: 1380.  1
2007 Kawashima S, Kawashima T, Putnam NH, Rokhsar DS, Wada H, Kanehisa M. Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes. Genome Informatics. International Conference On Genome Informatics. 19: 50-60. PMID 18546504  1
2007 Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Maréchal-Drouard L, Marshall WF, Qu LH, Nelson DR, Sanderfoot AA, Spalding MH, ... ... Rokhsar DS, et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science (New York, N.Y.). 318: 245-50. PMID 17932292 DOI: 10.1126/science.1143609  1
2007 Adamska M, Matus DQ, Adamski M, Green K, Rokhsar DS, Martindale MQ, Degnan BM. The evolutionary origin of hedgehog proteins. Current Biology : Cb. 17: R836-7. PMID 17925209 DOI: 10.1016/j.cub.2007.08.010  1
2007 Hellsten U, Khokha MK, Grammer TC, Harland RM, Richardson P, Rokhsar DS. Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis. Bmc Biology. 5: 31. PMID 17651506 DOI: 10.1186/1741-7007-5-31  1
2007 Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, ... ... Rokhsar DS, et al. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science (New York, N.Y.). 317: 86-94. PMID 17615350 DOI: 10.1126/science.1139158  1
2007 Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, ... ... Rokhsar D, et al. A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation. The Plant Journal : For Cell and Molecular Biology. 50: 1063-78. PMID 17488239 DOI: 10.1111/j.1365-313X.2007.03112.x  1
2007 Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, ... ... Rokhsar D, et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proceedings of the National Academy of Sciences of the United States of America. 104: 7705-10. PMID 17460045 DOI: 10.1073/pnas.0611046104  1
2007 Larroux C, Fahey B, Degnan SM, Adamski M, Rokhsar DS, Degnan BM. The NK homeobox gene cluster predates the origin of Hox genes. Current Biology : Cb. 17: 706-10. PMID 17379523 DOI: 10.1016/j.cub.2007.03.008  1
2007 Prochnik SE, Rokhsar DS, Aboobaker AA. Evidence for a microRNA expansion in the bilaterian ancestor. Development Genes and Evolution. 217: 73-7. PMID 17103184 DOI: 10.1007/s00427-006-0116-1  1
2007 Montsant A, Allen AE, Coesel S, Martino AD, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, ... ... Rokhsar DS, et al. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana Journal of Phycology. 43: 585-604. DOI: 10.1111/j.1529-8817.2007.00342.x  1
2007 Grossman AR, Rokhsar DS. Alga genome data may help biodiesel production Industrial Bioprocessing. 29: 4-5.  1
2006 Tyler BM, Tripathy S, Zhang X, Dehal P, Jiang RH, Aerts A, Arredondo FD, Baxter L, Bensasson D, Beynon JL, Chapman J, Damasceno CM, Dorrance AE, Dou D, Dickerman AW, ... ... Rokhsar DS, et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science (New York, N.Y.). 313: 1261-6. PMID 16946064 DOI: 10.1126/science.1128796  1
2006 Sullivan JC, Ryan JF, Watson JA, Webb J, Mullikin JC, Rokhsar D, Finnerty JR. StellaBase: the Nematostella vectensis Genomics Database. Nucleic Acids Research. 34: D495-9. PMID 16381919 DOI: 10.1093/nar/gkj020  1
2006 Shoguchi E, Kawashima T, Satou Y, Hamaguchi M, Sin-I T, Kohara Y, Putnam N, Rokhsar DS, Satoh N. Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis. Genome Research. 16: 297-303. PMID 16354750 DOI: 10.1101/gr.4156606  1
2006 Jackson SA, Rokhsar D, Stacey G, Shoemaker RC, Schmutz J, Grimwood J. Toward a reference sequence of the soybean genome: A multiagency effort Crop Science. 46: S-55-S-61. DOI: 10.2135/cropsci2006.08.0514tpg  1
2005 Keys DN, Lee BI, Di Gregorio A, Harafuji N, Detter JC, Wang M, Kahsai O, Ahn S, Zhang C, Doyle SA, Satoh N, Satou Y, Saiga H, Christian AT, Rokhsar DS, et al. A saturation screen for cis-acting regulatory DNA in the Hox genes of Ciona intestinalis. Proceedings of the National Academy of Sciences of the United States of America. 102: 679-83. PMID 15647365 DOI: 10.1073/pnas.0408952102  1
2005 Mahony S, Hendrix D, Golden A, Smith TJ, Rokhsar DS. Transcription factor binding site identification using the self-organizing map. Bioinformatics (Oxford, England). 21: 1807-14. PMID 15647296 DOI: 10.1093/bioinformatics/bti256  1
2004 Martin J, Han C, Gordon LA, Terry A, Prabhakar S, She X, Xie G, Hellsten U, Chan YM, Altherr M, Couronne O, Aerts A, Bajorek E, Black S, Blumer H, ... ... Rokhsar DS, et al. The sequence and analysis of duplication-rich human chromosome 16. Nature. 432: 988-94. PMID 15616553 DOI: 10.1038/nature03187  0.32
2004 Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, ... ... Rokhsar DS, et al. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (New York, N.Y.). 306: 79-86. PMID 15459382 DOI: 10.1126/science.1101156  1
2004 Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, Lowry S, Gordon LA, Scott D, Xie G, Huang W, Hellsten U, Tran-Gyamfi M, She X, Prabhakar S, Aerts A, ... ... Rokhsar DS, et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431: 268-74. PMID 15372022 DOI: 10.1038/nature02919  1
2004 Hallam SJ, Putnam N, Preston CM, Detter JC, Rokhsar D, Richardson PM, DeLong EF. Reverse methanogenesis: testing the hypothesis with environmental genomics. Science (New York, N.Y.). 305: 1457-62. PMID 15353801 DOI: 10.1126/science.1100025  1
2004 Grimwood J, Gordon LA, Olsen A, Terry A, Schmutz J, Lamerdin J, Hellsten U, Goodstein D, Couronne O, Tran-Gyamfi M, Aerts A, Altherr M, Ashworth L, Bajorek E, Black S, ... ... Rokhsar DS, et al. The DNA sequence and biology of human chromosome 19. Nature. 428: 529-35. PMID 15057824 DOI: 10.1038/nature02399  0.32
2004 Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature. 428: 37-43. PMID 14961025 DOI: 10.1038/nature02340  1
2004 Cullen D, Rokhsar D. White rot fungus genome will help biomass R and D Industrial Bioprocessing. 26: 5-6.  1
2003 Gibson-Brown JJ, Osoegawa K, McPherson JD, Waterston RH, De Jong PJ, Rokhsar DS, Holland LZ. A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 300: 5-22. PMID 14984031  1
2003 Azumi K, De Santis R, De Tomaso A, Rigoutsos I, Yoshizaki F, Pinto MR, Marino R, Shida K, Ikeda M, Ikeda M, Arai M, Inoue Y, Shimizu T, Satoh N, Rokhsar DS, et al. Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: "waiting for Godot". Immunogenetics. 55: 570-81. PMID 14530883 DOI: 10.1007/s00251-003-0606-5  1
2002 Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, ... ... Rokhsar DS, et al. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (New York, N.Y.). 298: 2157-67. PMID 12481130 DOI: 10.1126/science.1080049  1
2001 Butts DA, Rokhsar DS. The information content of spontaneous retinal waves. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 21: 961-73. PMID 11157082  1
2000 Bryant Z, Pande VS, Rokhsar DS. Mechanical unfolding of a beta-hairpin using molecular dynamics. Biophysical Journal. 78: 584-9. PMID 10653773 DOI: 10.1016/S0006-3495(00)76618-5  1
1999 Pande VS, Rokhsar DS. Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G. Proceedings of the National Academy of Sciences of the United States of America. 96: 9062-7. PMID 10430895 DOI: 10.1073/pnas.96.16.9062  1
1999 Butts DA, Feller MB, Shatz CJ, Rokhsar DS. Retinal waves are governed by collective network properties. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 19: 3580-93. PMID 10212317  1
1999 Pande VS, Rokhsar DS. Folding pathway of a lattice model for proteins. Proceedings of the National Academy of Sciences of the United States of America. 96: 1273-8. PMID 9990014 DOI: 10.1073/pnas.96.4.1273  1
1999 Rokhsar DS. Condensates in a twist Nature. 401: 533-534. DOI: 10.1038/44024  1
1999 Butts DA, Rokhsar DS. Predicted signatures of rotating Bose-Einstein condensates Nature. 397: 327-329. DOI: 10.1038/16865  1
1998 Pande VS, Grosberg AYu, Tanaka T, Rokhsar DS. Pathways for protein folding: is a new view needed? Current Opinion in Structural Biology. 8: 68-79. PMID 9519298 DOI: 10.1016/S0959-440X(98)80012-2  1
1998 Pande VS, Rokhsar DS. Is the molten globule a third phase of proteins? Proceedings of the National Academy of Sciences of the United States of America. 95: 1490-4. PMID 9465042 DOI: 10.1073/pnas.95.4.1490  1
1997 Feller MB, Butts DA, Aaron HL, Rokhsar DS, Shatz CJ. Dynamic processes shape spatiotemporal properties of retinal waves. Neuron. 19: 293-306. PMID 9292720 DOI: 10.1016/S0896-6273(00)80940-X  1
1997 Rokhsar DS. Vortex stability and persistent currents in trapped bose gases Physical Review Letters. 79: 2164-2167.  1
1997 Butts DA, Rokhsar DS. Trapped Fermi gases Physical Review a - Atomic, Molecular, and Optical Physics. 55: 4346-4350.  1
1996 Singh KG, Rokhsar DS. Collective Excitations of a Confined Bose Condensate. Physical Review Letters. 77: 1667-1670. PMID 10063141  1
1996 Deaven DM, Rokhsar DS. Variational evidence for spin liquids in frustrated lattices. Physical Review. B, Condensed Matter. 53: 14966-14970. PMID 9983290  1
1996 Rokhsar DS. Ehrenfest's theorem and the particle-in-a-box American Journal of Physics. 64: 1416-1418.  1
1996 Deaven DM, Rokhsar DS. Variational evidence for spin liquids in frustrated lattices Physical Review B - Condensed Matter and Materials Physics. 53: 14966-14970.  1
1995 Lammert PE, Rokhsar DS, Chakravarty S, Kivelson S, Salkola MI. Metallic screening and correlation effects in superconducting fullerenes. Physical Review Letters. 74: 996-999. PMID 10058901  1
1995 Deaven DM, Lammert PE, Rokhsar DS. Pairing in alkaline-earth-metal-doped fullerenes. Physical Review. B, Condensed Matter. 52: 16377-16380. PMID 9981034  1
1995 Toner J, Lammert PE, Rokhsar DS. Topology and nematic ordering. II. Observable critical behavior. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 52: 1801-1810. PMID 9963599 DOI: 10.1103/PhysRevLett.70.1650  1
1995 Lammert PE, Rokhsar DS, Toner J. Topology and nematic ordering. I. A gauge theory. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 52: 1778-1800. PMID 9963598  1
1995 Lammert PE, Rokhsar DS, Chakravarty S, Kivelson S, Salkola MI. Metallic screening and correlation effects in superconducting fullerenes Physical Review Letters. 74: 996-999. DOI: 10.1103/PhysRevLett.74.996  1
1995 Toner J, Lammert PE, Rokhsar DS. Topology and nematic ordering. II. Observable critical behavior Physical Review E. 52: 1801-1810. DOI: 10.1103/PhysRevE.52.1801  1
1995 Lammert PE, Rokhsar DS, Toner J. Topology and nematic ordering. I. A gauge theory Physical Review E. 52: 1778-1800. DOI: 10.1103/PhysRevE.52.1778  1
1995 Deaven DM, Lammert PE, Rokhsar DS. Pairing in alkaline-earth-metal-doped fullerenes Physical Review B. 52: 16377-16380. DOI: 10.1103/PhysRevB.52.16377  1
1994 Singh KG, Rokhsar DS. Disordered bosons: Condensate and excitations. Physical Review. B, Condensed Matter. 49: 9013-9023. PMID 10009681 DOI: 10.1103/PhysRevB.49.9013  1
1993 Rokhsar DS. Pairing in doped spin liquids: Anyon versus d-wave superconductivity. Physical Review Letters. 70: 493-496. PMID 10054126 DOI: 10.1103/PhysRevLett.70.493  1
1993 Lammert PE, Rokhsar DS, Toner J. Topology and nematic ordering. Physical Review Letters. 70: 1650-1653. PMID 10053349  1
1993 Deaven DM, Rokhsar DS. Isotopic disorder in superconducting fullerenes. Physical Review. B, Condensed Matter. 48: 4114-4118. PMID 10008863  1
1993 Lammert PE, Rokhsar DS. Electronic pairing mechanism in fullerenes: Interactions and correlations. Physical Review. B, Condensed Matter. 48: 4103-4113. PMID 10008862  1
1993 Lammert PE, Rokhsar DS. Isotopic disorder and the electronic pairing mechanism in superconducting fullerenes. Physical Review. B, Condensed Matter. 48: 1310-1313. PMID 10008001  1
1993 Deaven DM, Rokhsar DS. Isotopic disorder in superconducting fullerenes Physical Review B. 48: 4114-4118. DOI: 10.1103/PhysRevB.48.4114  1
1993 Lammert PE, Rokhsar DS. Electronic pairing mechanism in fullerenes: Interactions and correlations Physical Review B. 48: 4103-4113. DOI: 10.1103/PhysRevB.48.4103  1
1993 Lammert PE, Rokhsar DS. Isotopic disorder and the electronic pairing mechanism in superconducting fullerenes Physical Review B. 48: 1310-1313. DOI: 10.1103/PhysRevB.48.1310  1
1992 Singh KG, Rokhsar DS. Real-space renormalization study of disordered interacting bosons. Physical Review. B, Condensed Matter. 46: 3002-3008. PMID 10003994 DOI: 10.1103/PhysRevB.46.3002  1
1992 Barbieri A, Deaven DM, Rokhsar DS. Gutzwiller projection with embedded clusters. Physical Review. B, Condensed Matter. 45: 8288-8299. PMID 10000660  1
1992 Barbieri A, Deaven DM, Rokhsar DS. Gutzwiller projection with embedded clusters Physical Review B. 45: 8288-8299. DOI: 10.1103/PhysRevB.45.8288  1
1991 Rokhsar DS, Kotliar BG. Gutzwiller projection for bosons. Physical Review. B, Condensed Matter. 44: 10328-10332. PMID 9999039 DOI: 10.1103/PhysRevB.44.10328  1
1991 Deaven DM, Rokhsar DS, Johnson M. Simple theory of exchange coupling in transition-metal magnetic multilayers. Physical Review. B, Condensed Matter. 44: 5977-5980. PMID 9998459  1
1991 Rabson DA, Mermin ND, Rokhsar DS, Wright DC. The space groups of axial crystals and quasicrystals Reviews of Modern Physics. 63: 699-733. DOI: 10.1103/RevModPhys.63.699  1
1991 Deaven DM, Rokhsar DS, Johnson M. Simple theory of exchange coupling in transition-metal magnetic multilayers Physical Review B. 44: 5977-5980. DOI: 10.1103/PhysRevB.44.5977  1
1991 Freericks JK, Falicov LM, Rokhsar DS. Exact solutions of frustrated ordinary and chiral eight-site Hubbard models Physical Review B. 44: 1458-1474. DOI: 10.1103/PhysRevB.44.1458  1
1990 Rokhsar DS. Solitons in chiral-spin liquids. Physical Review Letters. 65: 1506-1509. PMID 10042283 DOI: 10.1103/PhysRevLett.65.1506  1
1990 Rokhsar DS. Quadratic quantum antiferromagnets in the fermionic large-N limit. Physical Review. B, Condensed Matter. 42: 2526-2531. PMID 9995703 DOI: 10.1103/PhysRevB.42.2526  1
1990 Gronlund LD, Wright DC, Sethna JP, Rokhsar DS. Constrained spin model of phason dynamics in quasicrystals. Physical Review. B, Condensed Matter. 42: 8517-8536. PMID 9995028 DOI: 10.1103/PhysRevB.42.8517  1
1990 Figueirido F, Karlhede A, Kivelson S, Sondhi S, Rocek M, Rokhsar DS. Exact diagonalization of finite frustrated spin-(1/2 Heisenberg models. Physical Review. B, Condensed Matter. 41: 4619-4632. PMID 9994289 DOI: 10.1103/PhysRevB.41.4619  1
1990 Kivelson SA, Rokhsar DS. Bogoliubov quasiparticles, spinons, and spin-charge decoupling in superconductors. Physical Review. B, Condensed Matter. 41: 11693-11696. PMID 9993614 DOI: 10.1103/PhysRevB.41.11693  1
1990 Mermin ND, Rabson DA, Rokhsar DS, Wright DC. Stacking quasicrystallographic lattices. Physical Review. B, Condensed Matter. 41: 10498-10502. PMID 9993457  0.68
1990 Mermin ND, Rabson DA, Rokhsar DS, Wright DC. Stacking quasicrystallographic lattices Physical Review B. 41: 10498-10502. DOI: 10.1103/PhysRevB.41.10498  1
1989 Kivelson SA, Rokhsar DS, Sethna JP, Shore JD. Reply to "Neutral-fermion-soliton statistics in the short-range resonating-valence-bond state: A reevaluation" Physical Review. B, Condensed Matter. 40: 7343-7344. PMID 9991137  1
1989 Kivelson SA, Rokhsar DS, Sethna JP, Shore JD. Reply to Neutral-fermion-soliton statistics in the short-range resonating-valence-bond state: A reevaluation Physical Review B. 40: 7343-7344. DOI: 10.1103/PhysRevB.40.7343  1
1988 Kivelson SA, Rokhsar DS. Quasiparticle statistics in time-reversal invariant states. Physical Review Letters. 61: 2630. PMID 10039179 DOI: 10.1103/PhysRevLett.61.2630  1
1988 Rokhsar DS, Kivelson SA. Superconductivity and the quantum hard-core dimer gas. Physical Review Letters. 61: 2376-2379. PMID 10039096 DOI: 10.1103/PhysRevLett.61.2376  1
1988 Rokhsar DS, Wright DC, Mermin ND. Scale equivalence of quasicrystallographic space groups. Physical Review. B, Condensed Matter. 37: 8145-8149. PMID 9944146  0.68
1988 Kivelson SA, Rokhsar DS, Sethna JP. 2e or not 2e: Flux quantization in the resonating valence bond state Epl. 6: 353-358. DOI: 10.1209/0295-5075/6/4/013  1
1988 Rokhsar DS, Wright DC, Mermin ND. The two‐dimensional quasicrystallographic space groups with rotational symmetries less than 23‐fold Acta Crystallographica Section A. 44: 197-211. DOI: 10.1107/S0108767387010511  1
1988 Rokhsar DS, Wright DC, Mermin ND. Scale equivalence of quasicrystallographic space groups Physical Review B. 37: 8145-8149. DOI: 10.1103/PhysRevB.37.8145  1
1988 Kivelson S, Rokhsar DS. The low temperature properties of a short-ranged resonating-valence-bond superconductor Physica C: Superconductivity and Its Applications. 153: 531-537. DOI: 10.1016/0921-4534(88)90713-7  1
1987 Mermin ND, Rokhsar DS, Wright DC. Beware of 46-fold symmetry: The classification of two-dimensional quasicrystallographic lattices. Physical Review Letters. 58: 2099-2101. PMID 10034648  0.68
1987 Kivelson SA, Rokhsar DS, Sethna JP. Topology of the resonating valence-bond state: Solitons and high-Tc superconductivity. Physical Review. B, Condensed Matter. 35: 8865-8868. PMID 9941277 DOI: 10.1103/PhysRevB.35.8865  1
1987 Rokhsar DS, Mermin ND, Wright DC. Rudimentary quasicrystallography: The icosahedral and decagonal reciprocal lattices. Physical Review. B, Condensed Matter. 35: 5487-5495. PMID 9940757  0.68
1987 Mermin ND, Rokhsar DS, Wright DC. Beware of 46-Fold symmetry: The classification of two-dimensional quasicrystallographic lattices Physical Review Letters. 58: 2099-2101. DOI: 10.1103/PhysRevLett.58.2099  1
1987 Rokhsar DS, Mermin ND, Wright DC. Rudimentary quasicrystallography: The icosahedral and decagonal reciprocal lattices Physical Review B. 35: 5487-5495. DOI: 10.1103/PhysRevB.35.5487  1
1986 Rokhsar DS, Sethna JP. Quasicrystalline textures of cholesteric liquid crystals: Blue phase III? Physical Review Letters. 56: 1727-1730. PMID 10032753 DOI: 10.1103/PhysRevLett.56.1727  1
1986 Rokhsar DS, Anderson PW, Stein DL. Self-organization in prebiological systems: simulations of a model for the origin of genetic information. Journal of Molecular Evolution. 23: 119-26. PMID 3091843 DOI: 10.1007/BF02099906  1
Show low-probability matches.