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Billy K. Poon, Ph.D. - Publications

Affiliations: 
2008 Rice University, Houston, TX 
Area:
General Biophysics, Biochemistry, Biomedical Engineering
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Terwilliger TC, Liebschner D, Croll TI, Williams CJ, McCoy AJ, Poon BK, Afonine PV, Oeffner RD, Richardson JS, Read RJ, Adams PD. AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination. Nature Methods. PMID 38036854 DOI: 10.1038/s41592-023-02087-4  0.526
2023 Liebschner D, Afonine PV, Poon BK, Moriarty NW, Adams PD. Improved joint X-ray and neutron refinement procedure in Phenix. Acta Crystallographica. Section D, Structural Biology. PMID 37942718 DOI: 10.1107/S2059798323008914  0.557
2023 Terwilliger TC, Afonine PV, Liebschner D, Croll TI, McCoy AJ, Oeffner RD, Williams CJ, Poon BK, Richardson JS, Read RJ, Adams PD. Accelerating crystal structure determination with iterative AlphaFold prediction. Acta Crystallographica. Section D, Structural Biology. 79: 234-244. PMID 36876433 DOI: 10.1107/S205979832300102X  0.568
2023 Liebschner D, Moriarty NW, Poon BK, Adams PD. In situ ligand restraints from quantum-mechanical methods. Acta Crystallographica. Section D, Structural Biology. 79: 100-110. PMID 36762856 DOI: 10.1107/S2059798323000025  0.442
2023 Afonine PV, Gobet A, Moissonnier L, Martin J, Poon BK, Chaptal V. Conformational space exploration of cryo-EM structures by variability refinement. Biochimica Et Biophysica Acta. Biomembranes. 1865: 184133. PMID 36738875 DOI: 10.1016/j.bbamem.2023.184133  0.316
2022 Terwilliger TC, Poon BK, Afonine PV, Schlicksup CJ, Croll TI, Millán C, Richardson JS, Read RJ, Adams PD. Improved AlphaFold modeling with implicit experimental information. Nature Methods. PMID 36266465 DOI: 10.1038/s41592-022-01645-6  0.522
2021 Liebschner D, Afonine PV, Moriarty NW, Poon BK, Chen VB, Adams PD. CERES: a cryo-EM re-refinement system for continuous improvement of deposited models. Acta Crystallographica. Section D, Structural Biology. 77: 48-61. PMID 33404525 DOI: 10.1107/S2059798320015879  0.601
2019 Liebschner D, Afonine PV, Baker ML, Bunkóczi G, Chen VB, Croll TI, Hintze B, Hung LW, Jain S, McCoy AJ, Moriarty NW, Oeffner RD, Poon BK, Prisant MG, Read RJ, et al. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta Crystallographica. Section D, Structural Biology. 75: 861-877. PMID 31588918 DOI: 10.1107/S2059798319011471  0.584
2019 Kim DN, Moriarty NW, Kirmizialtin S, Afonine PV, Poon B, Sobolev OV, Adams PD, Sanbonmatsu K. cryo_fit: Democratization of Flexible Fitting for Cryo-EM. Journal of Structural Biology. PMID 31279069 DOI: 10.1016/J.Jsb.2019.05.012  0.561
2019 Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, ... ... Poon BK, et al. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). Acta Crystallographica. Section D, Structural Biology. 75: 451-454. PMID 30988261 DOI: 10.1107/S2059798319004522  0.452
2018 Pande K, Donatelli JJ, Malmerberg E, Foucar L, Poon BK, Sutter M, Botha S, Basu S, Bruce Doak R, Dörner K, Epp SW, Englert L, Fromme R, Hartmann E, Hartmann R, et al. Free-electron laser data for multiple-particle fluctuation scattering analysis. Scientific Data. 5: 180201. PMID 30277481 DOI: 10.1038/Sdata.2018.201  0.349
2018 Afonine PV, Klaholz BP, Moriarty NW, Poon BK, Sobolev OV, Terwilliger TC, Adams PD, Urzhumtsev A. New tools for the analysis and validation of cryo-EM maps and atomic models. Acta Crystallographica. Section D, Structural Biology. 74: 814-840. PMID 30198894 DOI: 10.1107/S2059798318009324  0.59
2018 Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Crystallographica. Section D, Structural Biology. 74: 531-544. PMID 29872004 DOI: 10.1107/S2059798318006551  0.595
2018 Liebschner D, Afonine PV, Moriarty NW, Poon BK, Sobolev OV, Adams PD. Polder maps: improving OMIT maps for ligand building and validation Acta Crystallographica Section a Foundations and Advances. 74: a308-a308. DOI: 10.1107/S0108767318096927  0.335
2017 Moriarty NW, Liebschner D, Klei HE, Echols N, Afonine PV, Headd J, Poon BK, Adams PD. Interactive Comparison and Remediation of Collections of Macromolecular Structures. Protein Science : a Publication of the Protein Society. PMID 28901593 DOI: 10.1002/Pro.3296  0.621
2017 Liebschner D, Afonine PV, Moriarty NW, Poon BK, Sobolev OV, Terwilliger TC, Adams PD. Polder maps: improving OMIT maps by excluding bulk solvent. Acta Crystallographica. Section D, Structural Biology. 73: 148-157. PMID 28177311 DOI: 10.1107/S2059798316018210  0.555
2013 Liu H, Poon BK, Saldin DK, Spence JC, Zwart PH. Three-dimensional single-particle imaging using angular correlations from X-ray laser data. Acta Crystallographica. Section a, Foundations of Crystallography. 69: 365-73. PMID 23778093 DOI: 10.1107/S0108767313006016  0.369
2012 Chen G, Modestino MA, Poon BK, Schirotzek A, Marchesini S, Segalman RA, Hexemer A, Zwart PH. Structure determination of Pt-coated Au dumbbells via fluctuation X-ray scattering. Journal of Synchrotron Radiation. 19: 695-700. PMID 22898947 DOI: 10.1107/S0909049512023801  0.346
2012 Liu H, Poon BK, Janssen AJ, Zwart PH. Computation of fluctuation scattering profiles via three-dimensional Zernike polynomials. Acta Crystallographica. Section a, Foundations of Crystallography. 68: 561-7. PMID 22893239 DOI: 10.1107/S0108767312029637  0.35
2010 Sauter NK, Poon BK. Autoindexing with outlier rejection and identification of superimposed lattices. Journal of Applied Crystallography. 43: 611-616. PMID 20502598 DOI: 10.1107/S0021889810010782  0.367
2010 Poon BK, Grosse-Kunstleve RW, Zwart PH, Sauter NK. Detection and correction of underassigned rotational symmetry prior to structure deposition. Acta Crystallographica. Section D, Biological Crystallography. 66: 503-13. PMID 20445225 DOI: 10.1107/S0907444910001502  0.468
2009 Ni F, Poon BK, Wang Q, Ma J. Application of normal-mode refinement to X-ray crystal structures at the lower resolution limit. Acta Crystallographica. Section D, Biological Crystallography. 65: 633-43. PMID 19564683 DOI: 10.1107/S0907444909010695  0.702
2009 Chen X, Lu M, Poon BK, Wang Q, Ma J. Structural improvement of unliganded simian immunodeficiency virus gp120 core by normal-mode-based X-ray crystallographic refinement. Acta Crystallographica. Section D, Biological Crystallography. 65: 339-47. PMID 19307715 DOI: 10.1107/S0907444909003539  0.649
2007 Chen X, Poon BK, Dousis A, Wang Q, Ma J. Normal-mode refinement of anisotropic thermal parameters for potassium channel KcsA at 3.2 A crystallographic resolution. Structure (London, England : 1993). 15: 955-62. PMID 17698000 DOI: 10.1016/J.Str.2007.06.012  0.667
2007 Poon BK, Chen X, Lu M, Vyas NK, Quiocho FA, Wang Q, Ma J. Normal mode refinement of anisotropic thermal parameters for a supramolecular complex at 3.42-A crystallographic resolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 7869-74. PMID 17470791 DOI: 10.1073/Pnas.0701204104  0.634
2006 Lu M, Poon B, Ma J. A New Method for Coarse-Grained Elastic Normal-Mode Analysis. Journal of Chemical Theory and Computation. 2: 464-471. PMID 21760758 DOI: 10.1021/Ct050307U  0.566
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