| Year |
Citation |
Score |
| 2023 |
Fan C, Flood E, Sukomon N, Agarwal S, Allen TW, Nimigean CM. Calcium-gated potassium channel blockade via membrane-facing fenestrations. Nature Chemical Biology. PMID 37653172 DOI: 10.1038/s41589-023-01406-2 |
0.399 |
|
| 2021 |
Ngo V, Li H, MacKerell AD, Allen TW, Roux B, Noskov S. Polarization Effects in Water-Mediated Selective Cation Transport across a Narrow Transmembrane Channel. Journal of Chemical Theory and Computation. PMID 33539082 DOI: 10.1021/acs.jctc.0c00968 |
0.722 |
|
| 2021 |
Chen P, Vorobyov I, Roux B, Allen TW. Molecular Dynamics Simulations Based on Polarizable Models Show that Ion Permeation Interconverts between Different Mechanisms as a Function of Membrane Thickness. The Journal of Physical Chemistry. B. PMID 33493394 DOI: 10.1021/acs.jpcb.0c08613 |
0.558 |
|
| 2020 |
Boiteux C, Posson DJ, Allen TW, Nimigean CM. Selectivity filter ion binding affinity determines inactivation in a potassium channel. Proceedings of the National Academy of Sciences of the United States of America. PMID 33154158 DOI: 10.1073/pnas.2009624117 |
0.423 |
|
| 2020 |
Fan C, Sukomon N, Flood E, Rheinberger J, Allen TW, Nimigean CM. Ball-and-chain inactivation in a calcium-gated potassium channel. Nature. 580: 288-293. PMID 32269335 DOI: 10.1038/S41586-020-2116-0 |
0.505 |
|
| 2020 |
Lynagh T, Flood E, Boiteux C, Sheikh ZP, Allen TW, Pless SA. Determinants of ion selectivity in ASIC1a- and ASIC2a-containing acid-sensing ion channels. The Journal of General Physiology. 152. PMID 31952079 DOI: 10.1085/Jgp.201812297 |
0.536 |
|
| 2019 |
Lev B, Allen TW. Simulating ion channel activation mechanisms using swarms of trajectories. Journal of Computational Chemistry. PMID 31743478 DOI: 10.1002/Jcc.26102 |
0.553 |
|
| 2019 |
Flood E, Boiteux C, Lev B, Vorobyov I, Allen TW. Atomistic Simulations of Membrane Ion Channel Conduction, Gating, and Modulation. Chemical Reviews. PMID 31246417 DOI: 10.1021/Acs.Chemrev.8B00630 |
0.58 |
|
| 2019 |
Garcia A, Lev B, Hossain KR, Gorman A, Diaz D, Pham THN, Cornelius F, Allen TW, Clarke RJ. Cholesterol depletion inhibits Na,K-ATPase activity in a near-native membrane environment. The Journal of Biological Chemistry. PMID 30770471 DOI: 10.1074/Jbc.Ra118.006223 |
0.341 |
|
| 2019 |
Sheikh ZP, Lynagh T, Flood E, Boiteux C, Allen TW, Pless SA. Molecular Basis for Ion Selectivity in Heteromeric Acid-Sensing Ion Channels Biophysical Journal. 116: 110a. DOI: 10.1016/J.Bpj.2018.11.627 |
0.513 |
|
| 2018 |
Flood E, Boiteux C, Allen TW. Selective ion permeation involves complexation with carboxylates and lysine in a model human sodium channel. Plos Computational Biology. 14: e1006398. PMID 30208027 DOI: 10.1371/Journal.Pcbi.1006398 |
0.552 |
|
| 2018 |
Boiteux C, Flood E, Allen TW. Comparison of permeation mechanisms in sodium-selective ion channels. Neuroscience Letters. PMID 29807068 DOI: 10.1016/J.Neulet.2018.05.036 |
0.572 |
|
| 2018 |
Flood E, Boiteux C, Allen TW. Selective Conduction in a Human Sodium Channel Controlled by Ion-Carboxylate and Lysine Interactions Biophysical Journal. 114: 633a-634a. DOI: 10.1016/J.Bpj.2017.11.3424 |
0.489 |
|
| 2017 |
Vandenberg JI, Perozo E, Allen TW. Towards a Structural View of Drug Binding to hERG K(+) Channels. Trends in Pharmacological Sciences. PMID 28711156 DOI: 10.1016/J.Tips.2017.06.004 |
0.418 |
|
| 2017 |
Lynagh T, Flood E, Boiteux C, Wulf M, Komnatnyy VV, Colding JM, Allen TW, Pless SA. A selectivity filter at the intracellular end of the acid-sensing ion channel pore. Elife. 6. PMID 28498103 DOI: 10.7554/Elife.24630 |
0.534 |
|
| 2017 |
Lev B, Murail S, Poitevin F, Cromer BA, Baaden M, Delarue M, Allen TW. String method solution of the gating pathways for a pentameric ligand-gated ion channel. Proceedings of the National Academy of Sciences of the United States of America. PMID 28487483 DOI: 10.1073/Pnas.1617567114 |
0.51 |
|
| 2017 |
Garcia A, Pratap PR, Lüpfert C, Cornelius F, Jacquemin D, Lev B, Allen TW, Clarke RJ. The voltage-sensitive dye RH421 detects a Na(+),K(+)-ATPase conformational change at the membrane surface. Biochimica Et Biophysica Acta. PMID 28115116 DOI: 10.1016/J.Bbamem.2017.01.022 |
0.352 |
|
| 2017 |
Lynagh T, Flood E, Boiteux C, Wulf M, Komnatnyy VV, Colding JM, Allen TW, Pless SA. Author response: A selectivity filter at the intracellular end of the acid-sensing ion channel pore Elife. DOI: 10.7554/Elife.24630.015 |
0.463 |
|
| 2017 |
Flood E, Boiteux C, Allen TW. Comparison of Ion Selectivity Mechanisms in Bacterial and Mammalian Sodium Channels Biophysical Journal. 112: 106a. DOI: 10.1016/J.Bpj.2016.11.603 |
0.495 |
|
| 2017 |
Nguyen PT, DeMarco KR, Vorobyov I, Clancy CE, Allen TW, Yarov-Yarovoy V. An Open State Model of the Navab Channel Explored by Rosetta and Molecular Dynamics Simulation Biophysical Journal. 112: 105a. DOI: 10.1016/J.Bpj.2016.11.599 |
0.508 |
|
| 2017 |
DeMarco KR, Nguyen PT, Allen TW, Yarov-Yarovoy V, Clancy CE, Vorobyov I. State-Dependent Structural Modeling and Atomistic Simulations of the hERG Potassium Channel Biophysical Journal. 112: 542a. DOI: 10.1016/J.Bpj.2016.11.2929 |
0.437 |
|
| 2017 |
Lev B, Murail S, Poitevin F, Cromer BA, Baaden M, Delarue M, Allen TW. Gating Pathways for a Pentameric Ligand-Gated Ion Channel Solved by Atomistic String Method Simulations Biophysical Journal. 112: 475a. DOI: 10.1016/J.Bpj.2016.11.2553 |
0.502 |
|
| 2016 |
Boiteux C, Allen TW. Understanding Sodium Channel Function and Modulation Using Atomistic Simulations of Bacterial Channel Structures. Current Topics in Membranes. 78: 145-82. PMID 27586284 DOI: 10.1016/Bs.Ctm.2016.07.002 |
0.505 |
|
| 2016 |
Ngo VA, Kim I, Allen TW, Noskov SY. Estimation of Potentials of Mean Force from Non-Equilibrium Pulling Simulations Using Both Minh-Adib Estimator and Weighted Histogram Analysis Method. Journal of Chemical Theory and Computation. PMID 26799775 DOI: 10.1021/Acs.Jctc.5B01050 |
0.671 |
|
| 2016 |
Boiteux C, French C, Allen TW. Modulation of a Bacterial Voltage-Gated Sodium Channel by the Anti-Epileptic Drug Lacosamide Biophysical Journal. 110: 111a. DOI: 10.1016/J.Bpj.2015.11.653 |
0.472 |
|
| 2016 |
DeMarco K, Boiteux C, Allen TW, Yarov-Yarovoy V, Clancy CE. Molecular Scale Prediction of Lidocaine Interaction with the Pore Domain of Human Nav1.5 Biophysical Journal. 110: 107a. DOI: 10.1016/J.Bpj.2015.11.636 |
0.444 |
|
| 2016 |
Lev B, Murail S, Thomas M, Baaden M, Delarue M, Allen T. Allosteric Gating Pathways for the Pentameric Ligand-Gated Ion Channel Glic Biophysical Journal. 110: 456a. DOI: 10.1016/J.Bpj.2015.11.2442 |
0.525 |
|
| 2016 |
Nguyen PT, Sack JT, Allen TW, Yarov-Yarovoy V. Exploring Structural Interactions of Tarantula Toxins with Lipid Membranes using Rosetta and Molecular Dynamics Simulation Biophysical Journal. 110: 447a. DOI: 10.1016/J.Bpj.2015.11.2404 |
0.501 |
|
| 2015 |
Cournia Z, Allen TW, Andricioaei I, Antonny B, Baum D, Brannigan G, Buchete NV, Deckman JT, Delemotte L, Del Val C, Friedman R, Gkeka P, Hege HC, Hénin J, Kasimova MA, et al. Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory. The Journal of Membrane Biology. 248: 611-40. PMID 26063070 DOI: 10.1007/S00232-015-9802-0 |
0.506 |
|
| 2015 |
Posson DJ, Boiteux C, Allen TW, Nimigean CM. Structure and Dynamics of the Mthk K+ Channel Selectivity Filter during Gating Biophysical Journal. 108: 119a. DOI: 10.1016/J.Bpj.2014.11.669 |
0.453 |
|
| 2015 |
Boiteux C, Vorobyov I, French RJ, French C, Yarov-Yarovoy V, Allen TW. Sodium Selective Conduction, Inactivation and Inhibition Mechanisms using the Bacterial NavAb Channel Biophysical Journal. 108: 574a. DOI: 10.1016/J.Bpj.2014.11.3141 |
0.521 |
|
| 2014 |
Yarov-Yarovoy V, Allen TW, Clancy CE. Computational Models for Predictive Cardiac Ion Channel Pharmacology. Drug Discovery Today. Disease Models. 14: 3-10. PMID 26635886 DOI: 10.1016/J.Ddmod.2014.04.001 |
0.31 |
|
| 2014 |
Mares LJ, Garcia A, Rasmussen HH, Cornelius F, Mahmmoud YA, Berlin JR, Lev B, Allen TW, Clarke RJ. Identification of electric-field-dependent steps in the Na(+),K(+)-pump cycle. Biophysical Journal. 107: 1352-63. PMID 25229143 DOI: 10.1016/J.Bpj.2014.05.054 |
0.435 |
|
| 2014 |
Boiteux C, Vorobyov I, French RJ, French C, Yarov-Yarovoy V, Allen TW. Local anesthetic and antiepileptic drug access and binding to a bacterial voltage-gated sodium channel. Proceedings of the National Academy of Sciences of the United States of America. 111: 13057-62. PMID 25136136 DOI: 10.1073/Pnas.1408710111 |
0.484 |
|
| 2014 |
Boiteux C, Vorobyov I, Allen TW. Ion conduction and conformational flexibility of a bacterial voltage-gated sodium channel. Proceedings of the National Academy of Sciences of the United States of America. 111: 3454-9. PMID 24550503 DOI: 10.1073/Pnas.1320907111 |
0.566 |
|
| 2014 |
Vorobyov I, Olson TE, Kim JH, Koeppe RE, Andersen OS, Allen TW. Ion-induced defect permeation of lipid membranes. Biophysical Journal. 106: 586-97. PMID 24507599 DOI: 10.1016/J.Bpj.2013.12.027 |
0.506 |
|
| 2014 |
Boiteux C, Vorobyov I, Allen TW. The Origins of Ion Selectivity in a Bacterial Sodium Channel Revealed by μS-Long Simulations Biophysical Journal. 106: 131a. DOI: 10.1016/J.Bpj.2013.11.773 |
0.565 |
|
| 2014 |
Nguyen PT, Sack JT, Allen TW, Yarov-Yarovoy V. Structural Modeling of Toxin Interactions with the Human Voltage-Gated Sodium Channel Pore Biophysical Journal. 106: 130a. DOI: 10.1016/J.Bpj.2013.11.768 |
0.462 |
|
| 2014 |
Boiteux C, Vorobyov I, Allen TW. Uncovering the Links Between Conformational Flexibility and Function for a Bacterial Voltage-Gated Sodium Channel Biophysical Journal. 106: 130a. DOI: 10.1016/J.Bpj.2013.11.767 |
0.54 |
|
| 2014 |
Chen P, Vorobyov I, Allen TW. Charged Protein-Lipid Interactions in Bilayers with Wide-Ranging Thickness Biophysical Journal. 106: 98a. DOI: 10.1016/J.Bpj.2013.11.613 |
0.437 |
|
| 2014 |
Lev B, Clarke RJ, Allen TW. Effects of Lipid Composition on Biological Membrane Electrostatics Biophysical Journal. 106: 80a. DOI: 10.1016/J.Bpj.2013.11.520 |
0.417 |
|
| 2014 |
Lu J, Vorobyov I, Allen TW. The Distributions and Orientations of Retinoids in Retinal Membranes Studied with All-Atom Molecular Dynamics Simulations Biophysical Journal. 106: 499a. DOI: 10.1016/J.Bpj.2013.11.2793 |
0.336 |
|
| 2013 |
Li L, Vorobyov I, Allen TW. The different interactions of lysine and arginine side chains with lipid membranes. The Journal of Physical Chemistry. B. 117: 11906-20. PMID 24007457 DOI: 10.1021/Jp405418Y |
0.383 |
|
| 2013 |
de Jesus AJ, Allen TW. The determinants of hydrophobic mismatch response for transmembrane helices. Biochimica Et Biophysica Acta. 1828: 851-63. PMID 22995244 DOI: 10.1016/J.Bbamem.2012.09.012 |
0.328 |
|
| 2013 |
de Jesus AJ, Allen TW. The role of tryptophan side chains in membrane protein anchoring and hydrophobic mismatch. Biochimica Et Biophysica Acta. 1828: 864-76. PMID 22989724 DOI: 10.1016/J.Bbamem.2012.09.009 |
0.381 |
|
| 2013 |
Nguyen PT, Sack JT, Allen TW, Yarov-Yarovoy V. Structural Modeling of the Human Nav1.7 Sodium Channel Pore Biophysical Journal. 104: 137a. DOI: 10.1016/J.Bpj.2012.11.783 |
0.444 |
|
| 2013 |
Boiteux C, Vorobyov I, Allen TW. Long Molecular Dynamics Simulations of the Voltage-Gated Sodium Channel, NavAb Biophysical Journal. 104: 137a. DOI: 10.1016/J.Bpj.2012.11.779 |
0.571 |
|
| 2012 |
Vorobyov I, Bennett WF, Tieleman DP, Allen TW, Noskov S. The Role of Atomic Polarization in the Thermodynamics of Chloroform Partitioning to Lipid Bilayers. Journal of Chemical Theory and Computation. 8: 618-28. PMID 26596610 DOI: 10.1021/Ct200417P |
0.593 |
|
| 2012 |
Kim I, Allen TW. Bennett's acceptance ratio and histogram analysis methods enhanced by umbrella sampling along a reaction coordinate in configurational space. The Journal of Chemical Physics. 136: 164103. PMID 22559466 DOI: 10.1063/1.3701766 |
0.591 |
|
| 2012 |
Allen TW, Separovic F. Membrane protein structure and function. Biochimica Et Biophysica Acta. 1818: 125. PMID 22225970 DOI: 10.1016/J.Bbamem.2011.12.015 |
0.306 |
|
| 2012 |
Li LB, Vorobyov I, Allen TW. The role of membrane thickness in charged protein-lipid interactions. Biochimica Et Biophysica Acta. 1818: 135-45. PMID 22063722 DOI: 10.1016/J.Bbamem.2011.10.026 |
0.432 |
|
| 2012 |
Vorobyov I, Bennett WFD, Tieleman DP, Allen TW, Noskov S. The role of atomic polarization in the thermodynamics of chloroform partitioning to lipid bilayers Journal of Chemical Theory and Computation. 8: 618-628. DOI: 10.1021/ct200417p |
0.481 |
|
| 2012 |
Vorobyov I, Roark MB, Feller SE, Allen TW. Effect of Lipid Unsaturation on Membrane Protein Structure and Function from Multi-Microsecond Molecular Dynamics Simulations Biophysical Journal. 102: 498a. DOI: 10.1016/J.Bpj.2011.11.2725 |
0.462 |
|
| 2012 |
Vorobyov I, Koeppe R, Andersen OS, Allen TW. Origins of Non-Selective Ion Transport across Lipid Bilayers Biophysical Journal. 102: 335a. DOI: 10.1016/J.Bpj.2011.11.1834 |
0.503 |
|
| 2011 |
Kim I, Allen TW. On the selective ion binding hypothesis for potassium channels. Proceedings of the National Academy of Sciences of the United States of America. 108: 17963-8. PMID 22011574 DOI: 10.1073/Pnas.1110735108 |
0.659 |
|
| 2011 |
Nimigean CM, Allen TW. Origins of ion selectivity in potassium channels from the perspective of channel block. The Journal of General Physiology. 137: 405-13. PMID 21518829 DOI: 10.1085/Jgp.201010551 |
0.51 |
|
| 2011 |
Vorobyov I, Allen TW. On the role of anionic lipids in charged protein interactions with membranes. Biochimica Et Biophysica Acta. 1808: 1673-83. PMID 21073855 DOI: 10.1016/J.Bbamem.2010.11.009 |
0.372 |
|
| 2011 |
Nury H, Poitevin F, Van Renterghem C, Allen T, Changeux J, Corringer P, Delarue M, Baaden M. Conformational Dynamics in a Nicotinic Receptor Homologue Probed by Simulations Biophysical Journal. 100: 272a. DOI: 10.1016/J.Bpj.2010.12.1695 |
0.429 |
|
| 2010 |
Vorobyov I, Bekker B, Allen TW. Electrostatics of deformable lipid membranes. Biophysical Journal. 98: 2904-13. PMID 20550903 DOI: 10.1016/J.Bpj.2010.03.046 |
0.498 |
|
| 2010 |
Vorobyov I, Allen TW. The electrostatics of solvent and membrane interfaces and the role of electronic polarizability Journal of Chemical Physics. 132. DOI: 10.1063/1.3402125 |
0.4 |
|
| 2010 |
Vorobyov I, Allen TW. On the Roles of Anionic Lipids in Protein Localization and Permeability of Membranes Biophysical Journal. 98: 81a-82a. DOI: 10.1016/J.Bpj.2009.12.461 |
0.408 |
|
| 2010 |
Bekker B, Allen TW. Exploring the Permeation Mechanism of Valinomycin Across Lipid Membranes Biophysical Journal. 98: 331a. DOI: 10.1016/J.Bpj.2009.12.1797 |
0.505 |
|
| 2010 |
Kim I, Allen TW. Multi-Ion Mechanism of Potassium Channel Rejection of Na and Li Ions Biophysical Journal. 98: 331a. DOI: 10.1016/J.Bpj.2009.12.1796 |
0.693 |
|
| 2009 |
Thompson AN, Kim I, Panosian TD, Iverson TM, Allen TW, Nimigean CM. Mechanism of potassium-channel selectivity revealed by Na(+) and Li(+) binding sites within the KcsA pore. Nature Structural & Molecular Biology. 16: 1317-24. PMID 19946269 DOI: 10.1038/Nsmb.1703 |
0.672 |
|
| 2009 |
Ingolfsson HI, Vostrikov VV, Gu H, Koeppe RE, Hinton JF, Roux B, Allen TW, Andersen OS. Evaluating Gramicidin A Channel Backbone Dynamics by Molecular Dynamics and Nuclear Magnetic Resonance Biophysical Journal. 96: 152a-153a. DOI: 10.1016/J.Bpj.2008.12.688 |
0.611 |
|
| 2009 |
Vorobyov I, Bekker B, Allen TW. Electrostatic Determinants of Membrane Ion Permeability Biophysical Journal. 96: 660a. DOI: 10.1016/J.Bpj.2008.12.3490 |
0.519 |
|
| 2009 |
Kim I, Thompson A, Nimigean C, Allen TW. Cation Blocking Mechanisms of the KcsA Potassium Channel Explored with All-atom Free Energy Simulations Biophysical Journal. 96: 660a. DOI: 10.1016/J.Bpj.2008.12.3489 |
0.706 |
|
| 2009 |
Thompson AN, Kim I, Panosian T, Iverson T, Allen T, Nimigean C. New Insights Into Selectivity of Potassium Channels Using Small Cation Blockers Biophysical Journal. 96: 660a. DOI: 10.1016/J.Bpj.2008.12.3487 |
0.649 |
|
| 2009 |
Li Y, Allen TW, Andersen OS, Roux B. Potential of Mean Force Calculations of Ion Permeation in Gramicidin A Channel Biophysical Journal. 96: 365a. DOI: 10.1016/J.Bpj.2008.12.1966 |
0.665 |
|
| 2008 |
Li L, Vorobyov I, Allen TW. Potential of mean force and pKa profile calculation for a lipid membrane-exposed arginine side chain. The Journal of Physical Chemistry. B. 112: 9574-87. PMID 18636765 DOI: 10.1021/Jp7114912 |
0.46 |
|
| 2008 |
Vorobyov I, Li L, Allen TW. Assessing atomistic and coarse-grained force fields for protein-lipid interactions: the formidable challenge of an ionizable side chain in a membrane. The Journal of Physical Chemistry. B. 112: 9588-602. PMID 18636764 DOI: 10.1021/Jp711492H |
0.464 |
|
| 2008 |
Roux B, Andersen OS, Allen TW. Comment on "Free energy simulations of single and double ion occupancy in gramicidin A" [J. Chem. Phys. 126, 105103 (2007)]. The Journal of Chemical Physics. 128: 227101; author reply. PMID 18554067 DOI: 10.1063/1.2931568 |
0.657 |
|
| 2008 |
Li L, Vorobyov I, MacKerell AD, Allen TW. Is arginine charged in a membrane? Biophysical Journal. 94: L11-3. PMID 17981901 DOI: 10.1529/Biophysj.107.121566 |
0.482 |
|
| 2008 |
Li L, Vorobyov I, Dorairaj S, Allen TW. Chapter 15 Charged Protein Side Chain Movement in Lipid Bilayers Explored with Free Energy Simulation Current Topics in Membranes. 60: 405-459. DOI: 10.1016/S1063-5823(08)00015-X |
0.448 |
|
| 2007 |
Allen TW. Modeling charged protein side chains in lipid membranes. The Journal of General Physiology. 130: 237-40. PMID 17635964 DOI: 10.1085/Jgp.200709850 |
0.42 |
|
| 2007 |
Dorairaj S, Allen TW. On the thermodynamic stability of a charged arginine side chain in a transmembrane helix. Proceedings of the National Academy of Sciences of the United States of America. 104: 4943-8. PMID 17360368 DOI: 10.1073/Pnas.0610470104 |
0.449 |
|
| 2006 |
Allen TW, Andersen OS, Roux B. Molecular dynamics - potential of mean force calculations as a tool for understanding ion permeation and selectivity in narrow channels. Biophysical Chemistry. 124: 251-67. PMID 16781050 DOI: 10.1016/J.Bpc.2006.04.015 |
0.681 |
|
| 2006 |
Allen TW, Andersen OS, Roux B. Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields. Biophysical Journal. 90: 3447-68. PMID 16500984 DOI: 10.1529/Biophysj.105.077073 |
0.643 |
|
| 2004 |
Roux B, Allen T, Bernèche S, Im W. Theoretical and computational models of biological ion channels. Quarterly Reviews of Biophysics. 37: 15-103. PMID 17390604 DOI: 10.1017/S0033583504003968 |
0.719 |
|
| 2004 |
Allen TW, Andersen OS, Roux B. On the importance of atomic fluctuations, protein flexibility, and solvent in ion permeation. The Journal of General Physiology. 124: 679-90. PMID 15572347 DOI: 10.1085/Jgp.200409111 |
0.643 |
|
| 2004 |
Allen TW, Andersen OS, Roux B. Energetics of ion conduction through the gramicidin channel. Proceedings of the National Academy of Sciences of the United States of America. 101: 117-22. PMID 14691245 DOI: 10.1073/Pnas.2635314100 |
0.648 |
|
| 2003 |
Allen TW, Andersen OS, Roux B. Structure of gramicidin a in a lipid bilayer environment determined using molecular dynamics simulations and solid-state NMR data. Journal of the American Chemical Society. 125: 9868-77. PMID 12904055 DOI: 10.1021/Ja029317K |
0.534 |
|
| 2003 |
Allen TW, Baştuğ T, Kuyucak S, Chung SH. Gramicidin A channel as a test ground for molecular dynamics force fields. Biophysical Journal. 84: 2159-68. PMID 12668425 DOI: 10.1016/S0006-3495(03)75022-X |
0.524 |
|
| 2002 |
Chung SH, Allen TW, Kuyucak S. Modeling diverse range of potassium channels with Brownian dynamics. Biophysical Journal. 83: 263-77. PMID 12080118 DOI: 10.1016/S0006-3495(02)75167-9 |
0.532 |
|
| 2002 |
Corry B, Hoyles M, Allen TW, Walker M, Kuyucak S, Chung SH. Reservoir boundaries in Brownian dynamics simulations of ion channels. Biophysical Journal. 82: 1975-84. PMID 11916855 DOI: 10.1016/S0006-3495(02)75546-X |
0.479 |
|
| 2002 |
Chung SH, Allen TW, Kuyucak S. Conducting-state properties of the KcsA potassium channel from molecular and Brownian dynamics simulations. Biophysical Journal. 82: 628-45. PMID 11806907 DOI: 10.1016/S0006-3495(02)75427-1 |
0.58 |
|
| 2001 |
Allen TW, Chung SH. Brownian dynamics study of an open-state KcsA potassium channel. Biochimica Et Biophysica Acta. 1515: 83-91. PMID 11718664 DOI: 10.1016/S0005-2736(01)00395-9 |
0.494 |
|
| 2001 |
Corry B, Allen TW, Kuyucak S, Chung SH. Mechanisms of permeation and selectivity in calcium channels. Biophysical Journal. 80: 195-214. PMID 11159395 DOI: 10.1016/S0006-3495(01)76007-9 |
0.515 |
|
| 2001 |
Bliznyuk AA, Rendell AP, Allen TW, Chung SH. The potassium ion channel: Comparison of linear scaling semiempirical and molecular mechanics representations of the electrostatic potential Journal of Physical Chemistry B. 105: 12674-12679. DOI: 10.1021/Jp013069H |
0.479 |
|
| 2000 |
Corry B, Allen TW, Kuyucak S, Chung SH. A model of calcium channels. Biochimica Et Biophysica Acta. 1509: 1-6. PMID 11118513 DOI: 10.1016/S0005-2736(00)00330-8 |
0.556 |
|
| 2000 |
Allen TW, Kuyucak S, Chung SH. Molecular dynamics estimates of ion diffusion in model hydrophobic and KcsA potassium channels. Biophysical Chemistry. 86: 1-14. PMID 11011695 DOI: 10.1016/S0301-4622(00)00153-8 |
0.509 |
|
| 2000 |
Allen TW, Bliznyuk A, Rendell AP, Kuyucak S, Chung S. The potassium channel: Structure, selectivity and diffusion The Journal of Chemical Physics. 112: 8191-8204. DOI: 10.1063/1.481420 |
0.563 |
|
| 1999 |
Chung SH, Allen TW, Hoyles M, Kuyucak S. Permeation of ions across the potassium channel: Brownian dynamics studies. Biophysical Journal. 77: 2517-33. PMID 10545353 DOI: 10.1016/S0006-3495(99)77087-6 |
0.562 |
|
| 1999 |
Allen TW, Kuyucak S, Chung SH. Molecular dynamics study of the KcsA potassium channel. Biophysical Journal. 77: 2502-16. PMID 10545352 DOI: 10.1016/S0006-3495(99)77086-4 |
0.553 |
|
| 1999 |
Allen TW, Kuyucak S, Chung S. The effect of hydrophobic and hydrophilic channel walls on the structure and diffusion of water and ions The Journal of Chemical Physics. 111: 7985-7999. DOI: 10.1063/1.480132 |
0.479 |
|
| 1999 |
Allen T, Hoyles M, Kuyucak S, Chung S. Molecular and Brownian dynamics study of ion selectivity and conductivity in the potassium channel Chemical Physics Letters. 313: 358-365. DOI: 10.1016/S0009-2614(99)01004-0 |
0.568 |
|
| 1998 |
Chung SH, Hoyles M, Allen T, Kuyucak S. Study of ionic currents across a model membrane channel using Brownian dynamics. Biophysical Journal. 75: 793-809. PMID 9675181 DOI: 10.1016/S0006-3495(98)77569-1 |
0.571 |
|
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