John M. Beggs - Publications

Affiliations: 
Indiana University, Bloomington, Bloomington, IN, United States 
Area:
network dynamics, LTP, computational neuroscience
Website:
http://biocomplexity.indiana.edu/research/info/beggs.php

54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Newman EL, Varley TF, Parakkattu VK, Sherrill SP, Beggs JM. Revealing the Dynamics of Neural Information Processing with Multivariate Information Decomposition. Entropy (Basel, Switzerland). 24. PMID 35885153 DOI: 10.3390/e24070930  0.774
2022 Antonello PC, Varley TF, Beggs J, Porcionatto M, Sporns O, Faber J. Self-organization of in vitro neuronal assemblies drives to complex network topology. Elife. 11. PMID 35708741 DOI: 10.7554/eLife.74921  0.804
2020 Varley TF, Sporns O, Puce A, Beggs J. Differential effects of propofol and ketamine on critical brain dynamics. Plos Computational Biology. 16: e1008418. PMID 33347455 DOI: 10.1371/journal.pcbi.1008418  0.729
2020 Ju H, Kim JZ, Beggs JM, Bassett DS. Network structure of cascading neural systems predicts stimulus propagation and recovery. Journal of Neural Engineering. PMID 33036007 DOI: 10.1088/1741-2552/abbff1  0.449
2020 Ren N, Ito S, Hafizi H, Beggs JM, Stevenson IH. Model-based detection of putative synaptic connections from spike recordings with latency and type constraints. Journal of Neurophysiology. PMID 32937091 DOI: 10.1152/Jn.00066.2020  0.793
2020 Sherrill SP, Timme NM, Beggs JM, Newman EL. Correlated activity favors synergistic processing in local cortical networks in vitro at synaptically relevant timescales. Network Neuroscience (Cambridge, Mass.). 4: 678-697. PMID 32885121 DOI: 10.1162/netn_a_00141  0.362
2020 Ao Z, Cai H, Havert DJ, Wu Z, Gong Z, Beggs JM, Mackie K, Guo F. One-stop Microfluidic Assembly of Human Brain Organoids to Model Prenatal Cannabis Exposure. Analytical Chemistry. PMID 32070103 DOI: 10.1021/acs.analchem.0c00205  0.313
2019 Beggs JM. The Critically Tuned Cortex. Neuron. 104: 623-624. PMID 31751539 DOI: 10.1016/j.neuron.2019.10.039  0.367
2019 Faber SP, Timme NM, Beggs JM, Newman EL. Computation is concentrated in rich clubs of local cortical networks. Network Neuroscience (Cambridge, Mass.). 3: 384-404. PMID 30793088 DOI: 10.1162/netn_a_00069  0.427
2018 Hottowy P, Yeh F, Ito S, Skoczen A, Wiacek P, Mathieson K, Dabrowski W, Beggs J, Litke A. Mapping direct and indirect activation of cortical neurons by weak electrical pulses with massively parallel MEA-based electrical stimulation and recording Frontiers in Cellular Neuroscience. 12. DOI: 10.3389/Conf.Fncel.2018.38.00024  0.663
2017 Williams-García RV, Beggs JM, Ortiz G. Unveiling causal activity of complex networks Epl (Europhysics Letters). 119: 18003. DOI: 10.1209/0295-5075/119/18003  0.444
2016 Timme NM, Marshall NJ, Bennett N, Ripp M, Lautzenhiser E, Beggs JM. Criticality Maximizes Complexity in Neural Tissue. Frontiers in Physiology. 7: 425. PMID 27729870 DOI: 10.3389/fphys.2016.00425  0.422
2016 Hiolski EM, Ito S, Beggs JM, Lefebvre KA, Litke AM, Smith DR. Domoic acid disrupts the activity and connectivity of neuronal networks in organotypic brain slice cultures. Neurotoxicology. PMID 27506300 DOI: 10.1016/J.Neuro.2016.08.004  0.635
2016 Marshall N, Timme NM, Bennett N, Ripp M, Lautzenhiser E, Beggs JM. Analysis of Power Laws, Shape Collapses, and Neural Complexity: New Techniques and MATLAB Support via the NCC Toolbox. Frontiers in Physiology. 7: 250. PMID 27445842 DOI: 10.3389/fphys.2016.00250  0.344
2016 Wu J, Gao M, Rice SG, Tsang C, Beggs J, Turner D, Li G, Yang B, Xia K, Gao F, Qiu S, Liu Q, Kerrigan JF. Gap Junctions Contribute to Ictal/Interictal Genesis in Human Hypothalamic Hamartomas. Ebiomedicine. 8: 96-102. PMID 27428422 DOI: 10.1016/J.Ebiom.2016.04.026  0.363
2016 Timme NM, Ito S, Myroshnychenko M, Nigam S, Shimono M, Yeh FC, Hottowy P, Litke AM, Beggs JM. High-Degree Neurons Feed Cortical Computations. Plos Computational Biology. 12: e1004858. PMID 27159884 DOI: 10.1371/Journal.Pcbi.1004858  0.767
2016 Nakhnikian A, Ito S, Dwiel LL, Grasse LM, Rebec GV, Lauridsen LN, Beggs JM. A Novel Cross-Frequency Coupling Detection Method Using the Generalized Morse Wavelets. Journal of Neuroscience Methods. PMID 27129446 DOI: 10.1016/J.Jneumeth.2016.04.019  0.428
2016 Nigam S, Shimono M, Ito S, Yeh FC, Timme N, Myroshnychenko M, Lapish CC, Tosi Z, Hottowy P, Smith WC, Masmanidis SC, Litke AM, Sporns O, Beggs JM. Rich-Club Organization in Effective Connectivity among Cortical Neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 670-84. PMID 26791200 DOI: 10.1523/Jneurosci.2177-15.2016  0.792
2014 Williams-García RV, Moore M, Beggs JM, Ortiz G. Quasicritical brain dynamics on a nonequilibrium Widom line. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 062714. PMID 25615136 DOI: 10.1103/PhysRevE.90.062714  0.378
2014 Timme N, Ito S, Myroshnychenko M, Yeh FC, Hiolski E, Hottowy P, Beggs JM. Multiplex networks of cortical and hippocampal neurons revealed at different timescales. Plos One. 9: e115764. PMID 25536059 DOI: 10.1186/1471-2202-15-S1-P212  0.761
2014 Shimono M, Beggs JM. Functional Clusters, Hubs, and Communities in the Cortical Microconnectome. Cerebral Cortex (New York, N.Y. : 1991). PMID 25336598 DOI: 10.1093/cercor/bhu252  0.55
2014 Ito S, Yeh FC, Hiolski E, Rydygier P, Gunning DE, Hottowy P, Timme N, Litke AM, Beggs JM. Large-scale, high-resolution multielectrode-array recording depicts functional network differences of cortical and hippocampal cultures. Plos One. 9: e105324. PMID 25126851 DOI: 10.1371/Journal.Pone.0105324  0.756
2014 Nakhnikian A, Rebec GV, Grasse LM, Dwiel LL, Shimono M, Beggs JM. Behavior modulates effective connectivity between cortex and striatum. Plos One. 9: e89443. PMID 24618981 DOI: 10.1371/Journal.Pone.0089443  0.345
2014 Timme N, Alford W, Flecker B, Beggs JM. Synergy, redundancy, and multivariate information measures: an experimentalist's perspective. Journal of Computational Neuroscience. 36: 119-40. PMID 23820856 DOI: 10.1007/s10827-013-0458-4  0.305
2014 Nigam S, Sporns O, Shimono M, Beggs JM. Patterns of information flow in local cortical networks Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P213  0.703
2014 Shimono M, Beggs JM. Network community, clusters and hubs in cortical micro circuits Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-F2  0.516
2013 Gunning DE, Beggs JM, Dabrowski W, Hottowy P, Kenney CJ, Sher A, Litke AM, Mathieson K. Dense arrays of micro-needles for recording and electrical stimulation of neural activity in acute brain slices. Journal of Neural Engineering. 10: 016007. PMID 23234809 DOI: 10.1088/1741-2560/10/1/016007  0.39
2013 Beggs JM. Neuronal networks: Focus amidst the noise Nature Physics. 9: 533-534. DOI: 10.1038/nphys2707  0.467
2013 Peng J, Beggs JM. Attaining and maintaining criticality in a neuronal network model Physica a: Statistical Mechanics and Its Applications. 392: 1611-1620. DOI: 10.1016/j.physa.2012.11.013  0.427
2012 Friedman N, Ito S, Brinkman BA, Shimono M, DeVille RE, Dahmen KA, Beggs JM, Butler TC. Universal critical dynamics in high resolution neuronal avalanche data. Physical Review Letters. 108: 208102. PMID 23003192 DOI: 10.1103/Physrevlett.108.208102  0.65
2012 Beggs JM, Timme N. Being critical of criticality in the brain. Frontiers in Physiology. 3: 163. PMID 22701101 DOI: 10.3389/fphys.2012.00163  0.461
2011 Ito S, Hansen ME, Heiland R, Lumsdaine A, Litke AM, Beggs JM. Extending transfer entropy improves identification of effective connectivity in a spiking cortical network model. Plos One. 6: e27431. PMID 22102894 DOI: 10.1371/Journal.Pone.0027431  0.677
2011 Shimono M, Beggs JM. Mesoscopic neuronal activity and neuronal network architecture Neuroscience Research. 71: e304. DOI: 10.1016/j.neures.2011.07.1326  0.53
2010 Hobbs JP, Smith JL, Beggs JM. Aberrant neuronal avalanches in cortical tissue removed from juvenile epilepsy patients. Journal of Clinical Neurophysiology : Official Publication of the American Electroencephalographic Society. 27: 380-6. PMID 21076327 DOI: 10.1097/WNP.0b013e3181fdf8d3  0.719
2010 Chen W, Hobbs JP, Tang A, Beggs JM. A few strong connections: optimizing information retention in neuronal avalanches. Bmc Neuroscience. 11: 3. PMID 20053290 DOI: 10.1186/1471-2202-11-3  0.775
2010 Yeh FC, Tang A, Hobbs JP, Hottowy P, Dabrowski W, Sher A, Litke A, Beggs JM. Maximum entropy approaches to living neural networks Entropy. 12: 89-106. DOI: 10.3390/E12010089  0.806
2008 Beggs J, Nakada S, Fenoglio K, Wu J, Coons S, Kerrigan JF. Hypothalamic hamartomas associated with epilepsy: ultrastructural features. Journal of Neuropathology and Experimental Neurology. 67: 657-68. PMID 18596547 DOI: 10.1097/Nen.0B013E31817D8085  0.319
2008 Tang A, Jackson D, Hobbs J, Chen W, Smith JL, Patel H, Prieto A, Petrusca D, Grivich MI, Sher A, Hottowy P, Dabrowski W, Litke AM, Beggs JM. A maximum entropy model applied to spatial and temporal correlations from cortical networks in vitro. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 505-18. PMID 18184793 DOI: 10.1523/Jneurosci.3359-07.2008  0.766
2008 Beggs JM. The criticality hypothesis: how local cortical networks might optimize information processing. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 366: 329-43. PMID 17673410 DOI: 10.1098/rsta.2007.2092  0.457
2008 Smith JL, Hobbs J, Tang A, Jackson D, Chen W, Patel H, Prieto A, Sher A, Litke A, Beggs JM. Network Comparison of Epileptogenic Human Cortex and Excited Rat Cortex Journal of Neurosurgery: Pediatrics. 1: A351-A352. DOI: 10.3171/PED/2008/1/4/PAPER4  0.686
2008 Tang A, Honey CJ, Hobbs J, Sher A, Litke AM, Sporns O, Beggs JM. Information flow in local cortical networks is not democratic Bmc Neuroscience. 9. DOI: 10.1186/1471-2202-9-S1-O3  0.691
2008 Beggs JM. Erratum: How to build a critical mind Nature Physics. 4: 18-18. DOI: 10.1038/NPHYS836  0.303
2007 Hsu D, Tang A, Hsu M, Beggs JM. Simple spontaneously active Hebbian learning model: homeostasis of activity and connectivity, and consequences for learning and epileptogenesis. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 041909. PMID 17995028 DOI: 10.1103/Physreve.76.041909  0.6
2007 Beggs J. Neuronal avalanche Scholarpedia. 2: 1344. DOI: 10.4249/scholarpedia.1344  0.354
2007 Tang A, Hobbs J, Chen W, Jackson D, Smith JL, Patel H, Beggs JM. A second-order maximum entropy model predicts correlated network states, but not their evolution over time Bmc Neuroscience. 8: P32. DOI: 10.1186/1471-2202-8-S2-P32  0.604
2007 Beggs JM. Theoretical neuroscience: How to build a critical mind Nature Physics. 3: 834-835. DOI: 10.1038/nphys799  0.309
2007 Beggs JM, Klukas J, Chen W. Connectivity and dynamics in local cortical networks Understanding Complex Systems. 2007: 91-116. DOI: 10.1007/978-3-540-71512-2_3  0.319
2006 Hsu D, Beggs JM. Neuronal avalanches and criticality: A dynamical model for homeostasis Neurocomputing. 69: 1134-1136. DOI: 10.1016/J.Neucom.2005.12.060  0.449
2005 Haldeman C, Beggs JM. Critical branching captures activity in living neural networks and maximizes the number of metastable States. Physical Review Letters. 94: 058101. PMID 15783702 DOI: 10.1103/PhysRevLett.94.058101  0.434
2004 Beggs JM, Plenz D. Neuronal avalanches are diverse and precise activity patterns that are stable for many hours in cortical slice cultures. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 24: 5216-29. PMID 15175392 DOI: 10.1523/JNEUROSCI.0540-04.2004  0.716
2003 Beggs JM, Plenz D. Neuronal avalanches in neocortical circuits. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 11167-77. PMID 14657176 DOI: 10.1523/Jneurosci.23-35-11167.2003  0.735
2003 Johnson JD, Plenz D, Beggs J, Li W, Mieier M, Miltner N, Owen K. Analysis of spontaneous activity in cultured brain tissue using the discrete wavelet transform Proceedings - 3rd Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2003. 60-66. DOI: 10.1109/BIBE.2003.1188930  0.54
2000 Beggs JM, Moyer JR, McGann JP, Brown TH. Prolonged synaptic integration in perirhinal cortical neurons. Journal of Neurophysiology. 83: 3294-8. PMID 10848549 DOI: 10.1152/Jn.2000.83.6.3294  0.742
1994 Beggs JM, Kairiss EW. Electrophysiology and morphology of neurons in rat perirhinal cortex. Brain Research. 665: 18-32. PMID 7882014 DOI: 10.1016/0006-8993(94)91147-9  0.419
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