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Murat Yildirim, Ph.D - Publications

Affiliations: 
2010-2015 Mechanical Engineering University of Texas at Austin, Austin, Texas, U.S.A. 
 2015-2018 Picower Institute for Learning and Memory Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
nonlinear imaging, optogenetics
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Rikhye RV, Yildirim M, Hu M, Breton-Provencher V, Sur M. Reliable sensory processing in mouse visual cortex through cooperative interactions between somatostatin and parvalbumin interneurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 34493543 DOI: 10.1523/JNEUROSCI.3176-20.2021  0.68
2021 Zheng C, Park JK, Yildirim M, Boivin JR, Xue Y, Sur M, So PTC, Wadduwage DN. De-scattering with Excitation Patterning enables rapid wide-field imaging through scattering media. Science Advances. 7. PMID 34233883 DOI: 10.1126/sciadv.aay5496  0.487
2020 Yildirim M, Hu M, Le NM, Sugihara H, So PTC, Sur M. Quantitative third-harmonic generation imaging of mouse visual cortex areas reveals correlations between functional maps and structural substrates. Biomedical Optics Express. 11: 5650-5673. PMID 33149977 DOI: 10.1364/Boe.396962  0.677
2019 Yildirim M, Sugihara H, So PTC, Sur M. Functional imaging of visual cortical layers and subplate in awake mice with optimized three-photon microscopy. Nature Communications. 10: 177. PMID 30635577 DOI: 10.1038/S41467-018-08179-6  0.701
2019 Yildirim M, Sugihara H, So PTC, Sur M. Imaging neuronal responses through all cortical layers and subplate of visual cortex in awake mice with optimized three-photon microscopy Brain. DOI: 10.1364/Brain.2019.Bm4A.3  0.682
2017 Yildirim M, Feldman D, Wang T, Ouzounov DG, Chou S, Swaney J, Chung K, Xu C, So PTC, Sur M. Third harmonic generation imaging of intact human cerebral organoids to assess key components of early neurogenesis in Rett Syndrome (Conference Presentation) Proceedings of Spie. 10069. DOI: 10.1117/12.2256182  0.561
2016 Yildirim M, Quinn KP, Kobler JB, Zeitels SM, Georgakoudi I, Ben-Yakar A. Quantitative differentiation of normal and scarred tissues using second-harmonic generation microscopy. Scanning. PMID 27111090 DOI: 10.1002/Sca.21316  0.623
2016 Gabay I, Subramanian KG, Martin C, Yildirim M, Tuchin VV, Ben-Yakar A. Increasing the penetration depth for ultrafast laser tissue ablation using glycerol based optical clearing Proceedings of Spie. 9707. DOI: 10.1117/12.2213482  0.622
2015 Yildirim M, Durr N, Ben-Yakar A. Tripling the maximum imaging depth with third-harmonic generation microscopy. Journal of Biomedical Optics. 20: 096013. PMID 26376941 DOI: 10.1117/1.Jbo.20.9.096013  0.644
2014 Ferhanoglu O, Yildirim M, Subramanian K, Ben-Yakar A. A 5-mm piezo-scanning fiber device for high speed ultrafast laser microsurgery. Biomedical Optics Express. 5: 2023-36. PMID 25071946 DOI: 10.1364/Biomed.2014.Bt3A.44  0.644
2014 Yildirim M, Ferhanglu O, Ben-Yakar A, Durr N. Maximum imaging depth improvement with third-harmonic generation microscopy in turbid tissues Proceedings of the Ieee Annual Northeast Bioengineering Conference, Nebec. 2014. DOI: 10.1364/Biomed.2014.Bt4A.2  0.63
2014 Yildirim M, Ferhanoglu O, Kobler J, Zeitels SM, Ben-Yakar A. Parameters affecting ultrafast laser microsurgery for scar treatment in vocal folds Ieee Transactions On Biomedical Engineering. DOI: 10.1364/Biomed.2014.Bm2A.4  0.618
2014 Ferhanoglu O, Yildirim M, Subramanian K, Ben-Yakar A. A 5-mm diameter, piezo-scanning fiber device for high speed ultrafast laser microsurgery Proceedings of the Ieee Annual Northeast Bioengineering Conference, Nebec. 2014. DOI: 10.1109/NEBEC.2014.6972788  0.586
2014 Hoy CL, Ferhanoglu O, Yildirim M, Kim KH, Karajanagi SS, Chan KMC, Kobler JB, Zeitels SM, Ben-Yakar A. Clinical Ultrafast Laser Surgery: Recent Advances and Future Directions Ieee Journal of Selected Topics in Quantum Electronics. 20: 242-255. DOI: 10.1109/Jstqe.2013.2287098  0.64
2013 Yildirim M, Ferhanoglu O, Kobler J, Zeitels SM, Ben-Yakar A. Parameters affecting ultrafast laser microsurgery of subepithelial voids for scar treatment in vocal folds. Journal of Biomedical Optics. 18: 118001. PMID 24193950 DOI: 10.1117/1.Jbo.18.11.118001  0.639
2013 Yildirim M, Ferhanoglu O, Kobler JB, Zeitels SM, Ben-Yakar A. Maximum imaging depth comparison in porcine vocal folds using 776-nm vs. 1552-nm excitation wavelengths Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8588. DOI: 10.1117/12.2005630  0.664
2012 Hoy CL, Everett WN, Yildirim M, Kobler J, Zeitels SM, Ben-Yakar A. Towards endoscopic ultrafast laser microsurgery of vocal folds. Journal of Biomedical Optics. 17: 038002. PMID 22502583 DOI: 10.1117/1.Jbo.17.3.038002  0.664
2012 Hoy CL, Ferhanoglu O, Yildirim M, Piyawattanametha W, Ra H, Solgaard O, Ben-Yakar A. 9.6-mm diameter femtosecond laser microsurgery probe 2012 Conference On Lasers and Electro-Optics, Cleo 2012. DOI: 10.1364/Biomed.2012.Bsu2B.8  0.649
2011 Hoy CL, Ferhanoğlu O, Yildirim M, Piyawattanametha W, Ra H, Solgaard O, Ben-Yakar A. Optical design and imaging performance testing of a 9.6-mm diameter femtosecond laser microsurgery probe. Optics Express. 19: 10536-52. PMID 21643308 DOI: 10.1364/Oe.19.010536  0.662
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