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Thalia A. Farazi, Ph.D. - Publications

Affiliations: 
2002 Washington University, Saint Louis, St. Louis, MO 
Area:
General Biophysics, Medical Biophysics
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Mukherjee N, Wessels HH, Lebedeva S, Sajek M, Ghanbari M, Garzia A, Munteanu A, Yusuf D, Farazi T, Hoell JI, Akat KM, Akalin A, Tuschl T, Ohler U. Deciphering human ribonucleoprotein regulatory networks. Nucleic Acids Research. PMID 30517751 DOI: 10.1093/Nar/Gky1185  0.346
2015 Teplova M, Farazi TA, Tuschl T, Patel DJ. Structural basis underlying CAC RNA recognition by the RRM domain of dimeric RNA-binding protein RBPMS. Quarterly Reviews of Biophysics. 1-11. PMID 26347403 DOI: 10.1017/S0033583515000207  0.348
2014 Farazi TA, Leonhardt CS, Mukherjee N, Mihailovic A, Li S, Max KE, Meyer C, Yamaji M, Cekan P, Jacobs NC, Gerstberger S, Bognanni C, Larsson E, Ohler U, Tuschl T. Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets. Rna (New York, N.Y.). 20: 1090-102. PMID 24860013 DOI: 10.1261/Rna.045005.114  0.353
2014 Spitzer J, Hafner M, Landthaler M, Ascano M, Farazi T, Wardle G, Nusbaum J, Khorshid M, Burger L, Zavolan M, Tuschl T. PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins. Methods in Enzymology. 539: 113-61. PMID 24581442 DOI: 10.1016/B978-0-12-420120-0.00008-6  0.332
2013 Brown M, Suryawanshi H, Hafner M, Farazi TA, Tuschl T. Mammalian miRNA curation through next-generation sequencing. Frontiers in Genetics. 4: 145. PMID 23935604 DOI: 10.3389/Fgene.2013.00145  0.315
2013 Farazi TA, Hoell JI, Morozov P, Tuschl T. MicroRNAs in human cancer. Advances in Experimental Medicine and Biology. 774: 1-20. PMID 23377965 DOI: 10.1007/978-94-007-5590-1_1  0.309
2013 Shum D, Bhinder B, Ramirez CN, Radu C, Calder PA, Beauchamp L, Farazi T, Landthaler M, Tuschi T, Magdaleno S, Djaballah H. An arrayed RNA interference genome-wide screen identifies candidate genes involved in the MicroRNA 21 biogenesis pathway. Assay and Drug Development Technologies. 11: 191-205. PMID 23153064 DOI: 10.1089/Adt.2012.477  0.336
2012 Hafner M, Renwick N, Farazi TA, Mihailovi? A, Pena JT, Tuschl T. Barcoded cDNA library preparation for small RNA profiling by next-generation sequencing. Methods (San Diego, Calif.). 58: 164-70. PMID 22885844 DOI: 10.1016/J.Ymeth.2012.07.030  0.335
2012 Farazi TA, Brown M, Morozov P, Ten Hoeve JJ, Ben-Dov IZ, Hovestadt V, Hafner M, Renwick N, Mihailovi? A, Wessels LF, Tuschl T. Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing. Methods (San Diego, Calif.). 58: 171-87. PMID 22836126 DOI: 10.1016/J.Ymeth.2012.07.020  0.335
2011 Hoell JI, Larsson E, Runge S, Nusbaum JD, Duggimpudi S, Farazi TA, Hafner M, Borkhardt A, Sander C, Tuschl T. RNA targets of wild-type and mutant FET family proteins. Nature Structural & Molecular Biology. 18: 1428-31. PMID 22081015 DOI: 10.1038/Nsmb.2163  0.353
2011 Farazi TA, Spitzer JI, Morozov P, Tuschl T. miRNAs in human cancer. The Journal of Pathology. 223: 102-15. PMID 21125669 DOI: 10.1002/Path.2806  0.306
2008 Farazi TA, Juranek SA, Tuschl T. The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members. Development (Cambridge, England). 135: 1201-14. PMID 18287206 DOI: 10.1242/Dev.005629  0.352
2001 Farazi TA, Waksman G, Gordon JI. The biology and enzymology of protein N-myristoylation. The Journal of Biological Chemistry. 276: 39501-4. PMID 11527981 DOI: 10.1074/Jbc.R100042200  0.497
2001 Farazi TA, Manchester JK, Waksman G, Gordon JI. Pre-steady-state kinetic studies of Saccharomyces cerevisiae myristoylCoA:protein N-myristoyltransferase mutants identify residues involved in catalysis. Biochemistry. 40: 9177-86. PMID 11478885 DOI: 10.1021/Bi0107997  0.532
2001 Farazi TA, Waksman G, Gordon JI. Structures of Saccharomyces cerevisiae N-myristoyltransferase with bound myristoylCoA and peptide provide insights about substrate recognition and catalysis. Biochemistry. 40: 6335-43. PMID 11371195 DOI: 10.1021/Bi0101401  0.545
2000 Farazi TA, Manchester JK, Gordon JI. Transient-state kinetic analysis of Saccharomyces cerevisiae myristoylCoA:protein N-myristoyltransferase reveals that a step after chemical transformation is rate limiting. Biochemistry. 39: 15807-16. PMID 11123906 DOI: 10.1021/Bi002074T  0.523
1998 Bhatnagar RS, Fütterer K, Farazi TA, Korolev S, Murray CL, Jackson-Machelski E, Gokel GW, Gordon JI, Waksman G. Structure of N-myristoyltransferase with bound myristoylCoA and peptide substrate analogs. Nature Structural Biology. 5: 1091-7. PMID 9846880 DOI: 10.1038/4202  0.606
1998 Ashrafi K, Farazi TA, Gordon JI. A role for Saccharomyces cerevisiae fatty acid activation protein 4 in regulating protein N-myristoylation during entry into stationary phase. The Journal of Biological Chemistry. 273: 25864-74. PMID 9748261 DOI: 10.1074/Jbc.273.40.25864  0.6
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