Year |
Citation |
Score |
2022 |
Heitzman-Breen N, Ciupe SM. Modeling within-host and aerosol dynamics of SARS-CoV-2: The relationship with infectiousness. Plos Computational Biology. 18: e1009997. PMID 35913988 DOI: 10.1371/journal.pcbi.1009997 |
0.376 |
|
2021 |
Forde JE, Ciupe SM. Modeling the Influence of Vaccine Administration on COVID-19 Testing Strategies. Viruses. 13. PMID 34960814 DOI: 10.3390/v13122546 |
0.688 |
|
2021 |
Heitzman-Breen N, Golden J, Vazquez A, Kuchinsky SC, Duggal NK, Ciupe SM. Modeling the dynamics of Usutu virus infection in birds. Journal of Theoretical Biology. 531: 110896. PMID 34506809 DOI: 10.1016/j.jtbi.2021.110896 |
0.397 |
|
2021 |
Forde JE, Ciupe SM. Quantification of the Tradeoff between Test Sensitivity and Test Frequency in a COVID-19 Epidemic-A Multi-Scale Modeling Approach. Viruses. 13. PMID 33799660 DOI: 10.3390/v13030457 |
0.701 |
|
2021 |
Kuchinsky SC, Frere F, Heitzman-Breen N, Golden J, Vázquez A, Honaker CF, Siegel PB, Ciupe SM, LeRoith T, Duggal NK. Pathogenesis and shedding of Usutu virus in juvenile chickens. Emerging Microbes & Infections. 1-40. PMID 33769213 DOI: 10.1080/22221751.2021.1908850 |
0.393 |
|
2021 |
Ciupe SM, Vaidya NK, Forde JE. Early events in hepatitis B infection: the role of inoculum dose. Proceedings. Biological Sciences. 288: 20202715. PMID 33563115 DOI: 10.1098/rspb.2020.2715 |
0.744 |
|
2021 |
Kadelka S, Dahari H, Ciupe SM. Understanding the antiviral effects of RNAi-based therapy in HBeAg-positive chronic hepatitis B infection. Scientific Reports. 11: 200. PMID 33420293 DOI: 10.1038/s41598-020-80594-6 |
0.339 |
|
2020 |
Erwin S, Childs LM, Ciupe SM. Mathematical model of broadly reactive plasma cell production. Scientific Reports. 10: 3935. PMID 32127549 DOI: 10.1038/S41598-020-60316-8 |
0.365 |
|
2019 |
Kadelka S, Ciupe SM. Mathematical investigation of HBeAg seroclearance. Mathematical Biosciences and Engineering : Mbe. 16: 7616-7658. PMID 31698631 DOI: 10.3934/Mbe.2019382 |
0.428 |
|
2018 |
Kadelka S, Boribong BP, Li L, Ciupe SM. Modeling the Bistable Dynamics of the Innate Immune System. Bulletin of Mathematical Biology. PMID 30387078 DOI: 10.1007/S11538-018-0527-Y |
0.354 |
|
2018 |
Ciupe SM. Modeling the dynamics of hepatitis B infection, immunity, and drug therapy. Immunological Reviews. 285: 38-54. PMID 30129194 DOI: 10.1111/Imr.12686 |
0.556 |
|
2018 |
Ciupe SM, Miller CJ, Forde JE. A Bistable Switch in Virus Dynamics Can Explain the Differences in Disease Outcome Following SIV Infections in Rhesus Macaques. Frontiers in Microbiology. 9: 1216. PMID 29930544 DOI: 10.3389/Fmicb.2018.01216 |
0.756 |
|
2018 |
Nikin-Beers R, Blackwood JC, Childs LM, Ciupe SM. Unraveling within-host signatures of dengue infection at the population level. Journal of Theoretical Biology. PMID 29522728 DOI: 10.1016/J.Jtbi.2018.03.004 |
0.48 |
|
2017 |
Ciupe SM, Heffernan JM. In-host modeling. Infectious Disease Modelling. 2: 188-202. PMID 29928736 DOI: 10.1016/J.Idm.2017.04.002 |
0.376 |
|
2017 |
Dorratoltaj N, Nikin-Beers R, Ciupe SM, Eubank SG, Abbas KM. Multi-scale immunoepidemiological modeling of within-host and between-host HIV dynamics: systematic review of mathematical models. Peerj. 5: e3877. PMID 28970973 DOI: 10.7717/Peerj.3877 |
0.32 |
|
2017 |
Carracedo Rodriguez A, Chung M, Ciupe SM. Understanding the Complex Patterns Observed during Hepatitis B Virus Therapy. Viruses. 9. PMID 28534812 DOI: 10.3390/V9050117 |
0.506 |
|
2017 |
Nikin-Beers R, Ciupe SM. Modelling original antigenic sin in dengue viral infection. Mathematical Medicine and Biology : a Journal of the Ima. PMID 28339786 DOI: 10.1093/Imammb/Dqx002 |
0.516 |
|
2017 |
Erwin S, Ciupe SM. Germinal center dynamics during acute and chronic infection. Mathematical Biosciences and Engineering : Mbe. 14: 655-671. PMID 28092957 DOI: 10.3934/Mbe.2017037 |
0.473 |
|
2017 |
Verma M, Erwin S, Abedi V, Hontecillas R, Hoops S, Leber A, Bassaganya-Riera J, Ciupe SM. Modeling the Mechanisms by Which HIV-Associated Immunosuppression Influences HPV Persistence at the Oral Mucosa. Plos One. 12: e0168133. PMID 28060843 DOI: 10.1371/Journal.Pone.0168133 |
0.368 |
|
2017 |
Dorratoltaj N, Ciupe S, Nikin-Beers R, Eubank S, Pellegrino P, Williams I, Borrow P, Abbas K. Viral and immune system dynamics of HIV-1, CD4+ T cells and macrophages during the acute, clinically latent and late phases of HIV infection F1000research. 6. DOI: 10.7490/F1000Research.1113598.1 |
0.403 |
|
2016 |
Leber A, Abedi V, Hontecillas R, Viladomiu M, Hoops S, Ciupe S, Caughman J, Andrew T, Bassaganya-Riera J. Bistability analyses of CD4+ T follicular helper and regulatory cells during Helicobacter pylori infection. Journal of Theoretical Biology. PMID 26947272 DOI: 10.1016/J.Jtbi.2016.02.036 |
0.397 |
|
2016 |
Dorratoltaj N, Ciupe S, Eubank S, Bassaganya-Riera J, Rahmandad H, O'Dell M, Abbas K. Modeling within host dynamics of HIV infection and HAART interruptions F1000research. 5. DOI: 10.7490/F1000Research.1111698.1 |
0.384 |
|
2016 |
Dorratoltaj N, Ciupe S, Eubank S, Bassaganya-Riera J, Rahmandad H, O'Dell M, Abbas K. Mathematical modeling of HIV viral dynamics and immune response during treatment interruptions F1000research. 5. DOI: 10.7490/F1000Research.1111696.1 |
0.375 |
|
2016 |
Dorratoltaj N, Bassaganya-Riera J, Ciupe S, Eubank S, O’Dell M, Rahmandad H, Abbas K. Mathematical modeling of HIV viral dynamics and immune response during antiretroviral treatment interruptions F1000research. 5. DOI: 10.7490/F1000Research.1111644.1 |
0.372 |
|
2016 |
Forde JE, Ciupe SM, Cintron-Arias A, Lenhart S. Optimal control of drug therapy in a hepatitis B model Applied Sciences (Switzerland). 6. DOI: 10.3390/App6080219 |
0.748 |
|
2015 |
Nikin-Beers R, Ciupe SM. The role of antibody in enhancing dengue virus infection. Mathematical Biosciences. 263: 83-92. PMID 25707916 DOI: 10.1016/J.Mbs.2015.02.004 |
0.49 |
|
2015 |
Ciupe SM. Mathematical model of multivalent virus-antibody complex formation in humans following acute and chronic HIV infections. Journal of Mathematical Biology. 71: 513-32. PMID 25190279 DOI: 10.1007/S00285-014-0826-3 |
0.476 |
|
2014 |
Ciupe SM, Ribeiro RM, Perelson AS. Antibody responses during hepatitis B viral infection. Plos Computational Biology. 10: e1003730. PMID 25078553 DOI: 10.1371/Journal.Pcbi.1003730 |
0.533 |
|
2014 |
Ciupe SM, Schwartz EJ. Understanding virus-host dynamics following EIAV infection in SCID horses. Journal of Theoretical Biology. 343: 1-8. PMID 24252283 DOI: 10.1016/J.Jtbi.2013.11.003 |
0.461 |
|
2012 |
Ciupe SM, Hews S. Mathematical models of e-antigen mediated immune tolerance and activation following prenatal HBV infection. Plos One. 7: e39591. PMID 22768303 DOI: 10.1371/Journal.Pone.0039591 |
0.506 |
|
2012 |
Forde J, Volpe JM, Ciupe SM. Latently infected cell activation: a way to reduce the size of the HIV reservoir? Bulletin of Mathematical Biology. 74: 1651-72. PMID 22562387 DOI: 10.1007/S11538-012-9729-X |
0.751 |
|
2011 |
Ciupe SM, De Leenheer P, Kepler TB. Paradoxical suppression of poly-specific broadly neutralizing antibodies in the presence of strain-specific neutralizing antibodies following HIV infection. Journal of Theoretical Biology. 277: 55-66. PMID 21315731 DOI: 10.1016/J.Jtbi.2011.01.050 |
0.427 |
|
2011 |
Ciupe SM, Catllá AJ, Forde J, Schaeffer DG. Dynamics of hepatitis b virus infection: What causes viral clearance? Mathematical Population Studies. 18: 87-105. DOI: 10.1080/08898480.2011.564563 |
0.757 |
|
2009 |
Nelson P, Smith N, Ciupe S, Zou W, Omenn GS, Pietropaolo M. Modeling dynamic changes in type 1 diabetes progression: quantifying beta-cell variation after the appearance of islet-specific autoimmune responses. Mathematical Biosciences and Engineering : Mbe. 6: 753-78. PMID 19835428 DOI: 10.3934/Mbe.2009.6.753 |
0.594 |
|
2009 |
Ciupe SM, Devlin BH, Markert ML, Kepler TB. The dynamics of T-cell receptor repertoire diversity following thymus transplantation for DiGeorge anomaly. Plos Computational Biology. 5: e1000396. PMID 19521511 DOI: 10.1371/Journal.Pcbi.1000396 |
0.308 |
|
2007 |
Ciupe SM, Ribeiro RM, Nelson PW, Perelson AS. Modeling the mechanisms of acute hepatitis B virus infection. Journal of Theoretical Biology. 247: 23-35. PMID 17428501 DOI: 10.1016/J.Jtbi.2007.02.017 |
0.722 |
|
2007 |
Ciupe SM, Ribeiro RM, Nelson PW, Dusheiko G, Perelson AS. The role of cells refractory to productive infection in acute hepatitis B viral dynamics. Proceedings of the National Academy of Sciences of the United States of America. 104: 5050-5. PMID 17360406 DOI: 10.1073/Pnas.0603626104 |
0.711 |
|
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