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Umit V. Catalyurek - Publications

Affiliations: 
2001-2016 Biomedical Informatics Ohio State University, Columbus, Columbus, OH 
 2007-2016 Electrical and Computer Engineering Ohio State University, Columbus, Columbus, OH 
 2011-2016 Computer Science and Engineering Ohio State University, Columbus, Columbus, OH 
 2016- Computational Science and Engineering Georgia Institute of Technology, Atlanta, GA 
Area:
Bioinformatics Biology, Computer Science
Website:
http://www.cc.gatech.edu/~umit/
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Herrmann J, Özkaya MY, Uçar B, Kaya K, Çatalyürek ÜV. Multilevel Algorithms for Acyclic Partitioning of Directed Acyclic Graphs Siam Journal On Scientific Computing. 41: A2117-A2145. DOI: 10.1137/18M1176865  0.387
2019 Deveci M, Devine KD, Pedretti K, Taylor MA, Rajamanickam S, Catalyurek UV. Geometric Mapping of Tasks to Processors on Parallel Computers with Mesh or Torus Networks Ieee Transactions On Parallel and Distributed Systems. 30: 2018-2032. DOI: 10.1109/Tpds.2019.2900043  0.383
2018 Senturk IF, Balakrishnan P, Abu-Doleh A, Kaya K, Malluhi Q, Çatalyürek ÜV. A resource provisioning framework for bioinformatics applications in multi-cloud environments Future Generation Computer Systems. 78: 379-391. DOI: 10.1016/J.Future.2016.06.008  0.388
2017 Sariyüce AE, Seshadhri C, Pinar A, Çatalyürek ÜV. Nucleus Decompositions for Identifying Hierarchy of Dense Subgraphs Acm Transactions On the Web. 11: 1-27. DOI: 10.1145/3057742  0.425
2017 Sariyüce AE, Kaya K, Saule E, Çatalyürek ÜV. Graph Manipulations for Fast Centrality Computation Acm Transactions On Knowledge Discovery From Data. 11: 1-25. DOI: 10.1145/3022668  0.379
2016 Deveci M, Küçüktunç O, Eren K, Bozdağ D, Kaya K, Çatalyürek ÜV. Querying Co-regulated Genes on Diverse Gene Expression Datasets Via Biclustering. Methods in Molecular Biology (Clifton, N.J.). 1375: 55-74. PMID 26626937 DOI: 10.1007/7651_2015_246  0.713
2016 Deveci M, Rajamanickam S, Devine KD, Catalyurek UV. Multi-Jagged: A Scalable Parallel Spatial Partitioning Algorithm Ieee Transactions On Parallel and Distributed Systems. 27: 803-817. DOI: 10.1109/Tpds.2015.2412545  0.481
2015 Hatem A, Kaya K, Parvin J, Huang K, Çatalyürek ÜV. MICA: MicroRNA Integration for active module discovery Bcb 2015 - 6th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 136-145. DOI: 10.1145/2808719.2808733  0.66
2015 Küçüktunç O, Saule E, Kaya K, Çatalyürek ÜV. Diversifying Citation Recommendations Acm Transactions On Intelligent Systems and Technology. 5: 1-21. DOI: 10.1145/2668106  0.764
2015 Deveci M, Kaya K, Uçar B, Çatalyürek ÜV. Hypergraph partitioning for multiple communication cost metrics: Model and methods Journal of Parallel and Distributed Computing. 77: 69-83. DOI: 10.1016/J.Jpdc.2014.12.002  0.316
2015 Sarıyüce AE, Saule E, Kaya K, Çatalyürek ÜV. Regularizing graph centrality computations Journal of Parallel and Distributed Computing. 76: 106-119. DOI: 10.1016/J.Jpdc.2014.07.006  0.442
2015 Sarıyüce AE, Gedik B, Jacques-Silva G, Wu K, Çatalyürek ÜV. SONIC: streaming overlapping community detection Data Mining and Knowledge Discovery. 30: 819-847. DOI: 10.1007/S10618-015-0440-Z  0.321
2014 Bokhari SH, Çatalyürek ÜV, Gurcan MN. Massively Multithreaded Maxflow for Image Segmentation on the Cray XMT-2. Concurrency and Computation : Practice & Experience. 26: 2836-2855. PMID 25598745 DOI: 10.1002/Cpe.3181  0.377
2014 Jung M, Wilson EH, Choi W, Shalf J, Aktulga HM, Yang C, Saule E, Catalyurek UV, Kandemir M. Exploring the future of out-of-core computing with compute-local non-volatile memory Scientific Programming. 22: 125-139. DOI: 10.3233/Spr-140384  0.333
2013 Wang L, Hatem A, Catalyurek UV, Morrison M, Yu Z. Metagenomic insights into the carbohydrate-active enzymes carried by the microorganisms adhering to solid digesta in the rumen of cows. Plos One. 8: e78507. PMID 24223817 DOI: 10.1371/Journal.Pone.0078507  0.653
2013 Hatem A, Bozdağ D, Toland AE, Çatalyürek ÜV. Benchmarking short sequence mapping tools. Bmc Bioinformatics. 14: 184. PMID 23758764 DOI: 10.1186/1471-2105-14-184  0.71
2013 Eren K, Deveci M, Küçüktunç O, Çatalyürek ÜV. A comparative analysis of biclustering algorithms for gene expression data. Briefings in Bioinformatics. 14: 279-92. PMID 22772837 DOI: 10.1093/Bib/Bbs032  0.791
2013 Hatem A, Kaya K, Çatalyürek UV. PRASE: PageRank-based active subnetwork extraction 2013 Acm Conference On Bioinformatics, Computational Biology and Biomedical Informatics, Acm-Bcb 2013. 286-295. DOI: 10.1145/2506583.2506631  0.672
2013 Benoit A, Catalyurek UV, Robert Y, Saule E. A survey of pipelined workflow scheduling: Models and algorithms Acm Computing Surveys. 45. DOI: 10.1145/2501654.2501664  0.439
2013 Deveci M, Kaya K, Ucar B, Catalyurek UV. A push-Relabel-based maximum cardinality bipartite matching algorithm on GPUs Proceedings of the International Conference On Parallel Processing. 21-29. DOI: 10.1109/ICPP.2013.11  0.402
2013 Küçüktunç O, Kaya K, Saule E, Çatalyürek ÜV. Fast recommendation on bibliographic networks with sparse-matrix ordering and partitioning Social Network Analysis and Mining. 3: 1097-1111. DOI: 10.1007/S13278-013-0106-Z  0.765
2012 Boman EG, Çatalyürek ÜV, Chevalier C, Devine KD. The Zoltan and Isorropia Parallel Toolkits for Combinatorial Scientific Computing: Partitioning, Ordering and Coloring Scientific Programming. 20: 129-150. DOI: 10.1155/2012/713587  0.405
2012 Hatem A, Kaya K, Çatalyürek UV. Microarray vs. RNA-Seq: A comparison for active subnetwork discovery 2012 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2012. 450-457. DOI: 10.1145/2382936.2382994  0.651
2012 Kayaaslan E, Pinar A, Çatalyürek U, Aykanat C. Partitioning hypergraphs in scientific computing applications through vertex separators on graphs Siam Journal On Scientific Computing. 34. DOI: 10.1137/100810022  0.446
2012 Çatalyürek UV, Feo J, Gebremedhin AH, Halappanavar M, Pothen A. Graph coloring algorithms for multi-core and massively multithreaded architectures Parallel Computing. 38: 576-594. DOI: 10.1016/j.parco.2012.07.001  0.387
2012 Saule E, Bozdağ D, Çatalyürek ÜV. Optimizing the stretch of independent tasks on a cluster: From sequential tasks to moldable tasks Journal of Parallel and Distributed Computing. 72: 489-503. DOI: 10.1016/J.Jpdc.2011.12.007  0.765
2012 Xiang Y, Fuhry D, Kaya K, Jin R, Çatalyürek ÜV, Huang K. Merging network patterns: a general framework to summarize biomedical network data Network Modeling Analysis in Health Informatics and Bioinformatics. 1: 103-116. DOI: 10.1007/S13721-012-0009-3  0.362
2012 Teodoro G, Hartley TDR, Catalyurek UV, Ferreira R. Optimizing dataflow applications on heterogeneous environments Cluster Computing. 15: 125-144. DOI: 10.1007/S10586-010-0151-6  0.396
2011 Vieland VJ, Huang Y, Seok SC, Burian J, Catalyurek U, O'Connell J, Segre A, Valentine-Cooper W. KELVIN: a software package for rigorous measurement of statistical evidence in human genetics. Human Heredity. 72: 276-88. PMID 22189470 DOI: 10.1159/000330634  0.305
2011 Çatalyürek ÜV, Aykanat C, Kayaaslan E. Hypergraph Partitioning-Based Fill-Reducing Ordering for Symmetric Matrices Siam Journal On Scientific Computing. 33: 1996-2023. DOI: 10.1137/090757575  0.321
2011 Vydyanathan N, Catalyurek U, Kurc T, Sadayappan P, Saltz J. Optimizing latency and throughput of application workflows on clusters Parallel Computing. 37: 694-712. DOI: 10.1016/j.parco.2010.05.003  0.357
2010 Bozdaǧ D, Kumar AS, Catalyurek UV. Comparative analysis of biclustering algorithms 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 265-274. DOI: 10.1145/1854776.1854814  0.388
2010 Çatalyürek ÜV, Aykanat C, Uçar B. On Two-Dimensional Sparse Matrix Partitioning: Models, Methods, and a Recipe Siam Journal On Scientific Computing. 32: 656-683. DOI: 10.1137/080737770  0.32
2010 Bozdağ D, Çatalyürek ÜV, Gebremedhin AH, Manne F, Boman EG, Özgüner F. Distributed-Memory Parallel Algorithms for Distance-2 Coloring and Related Problems in Derivative Computation Siam Journal On Scientific Computing. 32: 2418-2446. DOI: 10.1137/080732158  0.776
2010 Bozdaǧ D, Hatem A, Catalyurek UV. Exploring parallelism in short sequence mapping using burrows-wheeler transform Proceedings of the 2010 Ieee International Symposium On Parallel and Distributed Processing, Workshops and Phd Forum, Ipdpsw 2010. DOI: 10.1109/IPDPSW.2010.5470897  0.675
2010 Saule E, Bozdaǧ D, Catalyurek UV. A moldable online scheduling algorithm and its application to parallel short sequence mapping Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6253: 93-109. DOI: 10.1007/978-3-642-16505-4_6  0.365
2009 Erdal S, Catalyurek UV, Payne PR, Saltz J, Kamal J, Gurcan MN. A knowledge-anchored integrative image search and retrieval system. Journal of Digital Imaging. 22: 166-82. PMID 18040742 DOI: 10.1007/S10278-007-9086-8  0.312
2009 Bozdaǧ D, Özgüner F, Catalyurek UV. Compaction of schedules and a two-stage approach for duplication-based DAG scheduling Ieee Transactions On Parallel and Distributed Systems. 20: 857-871. DOI: 10.1109/Tpds.2008.260  0.766
2009 Vydyanathan N, Krishnamoorthy S, Sabin GM, Catalyurek UV, Kurc T, Sadayappan P, Saltz JH. An integrated approach to locality-conscious processor allocation and scheduling of mixed-parallel applications Ieee Transactions On Parallel and Distributed Systems. 20: 1158-1172. DOI: 10.1109/Tpds.2008.219  0.458
2008 Vydyanathant N, Catalyurek U, Kurc T, Sadayappan P, Saltz J. A duplication based algorithm for optimizing latency under throughput constraints for streaming workflows Proceedings of the International Conference On Parallel Processing. 254-261. DOI: 10.1109/ICPP.2008.68  0.351
2008 Bozdaǧ D, Gebremedhin AH, Manne F, Boman EG, Catalyurek UV. A framework for scalable greedy coloring on distributed-memory parallel computers Journal of Parallel and Distributed Computing. 68: 515-535. DOI: 10.1016/J.Jpdc.2007.08.002  0.773
2007 Boman EG, Bozdag D, Catalyurek UV, Devine KD, Gebremedhin AH, Hovland PD, Pothen A, Strout MM. Enabling high performance computational science through combinatorial algorithms Journal of Physics: Conference Series. 78. DOI: 10.1088/1742-6596/78/1/012058  0.36
2007 Vydyanathan N, Catalyurek UV, Kure TM, Sadayappan P, Saltz JH. Toward optimizing latency under throughput constraints for application workflows on clusters Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4641: 173-183.  0.363
2006 Kurc T, Janies DA, Johnson AD, Langella S, Oster S, Hastings S, Habib F, Camerlengo T, Ervin D, Catalyurek UV, Saltz JH. An XML-based System for Synthesis of Data from Disparate Databases Journal of the American Medical Informatics Association. 13: 289-301. PMID 16501185 DOI: 10.1197/Jamia.M1848  0.321
2006 Devine KD, Boman EG, Heaphy RT, Bisseling RH, Catalyurek UV. Parallel hypergraph partitioning for scientific computing 20th International Parallel and Distributed Processing Symposium, Ipdps 2006. 2006. DOI: 10.1109/IPDPS.2006.1639359  0.351
2006 Weng L, Catalyurek U, Kurc T, Agrawal G, Saltz J. Using space and attribute partitioned partial replicas for data subsetting and aggregation queries Proceedings of the International Conference On Parallel Processing. 271-278. DOI: 10.1109/ICPP.2006.73  0.349
2006 Klie H, Bangerth W, Gai X, Wheeler MF, Stoffa PL, Sen M, Parashar M, Catalyurek U, Saltz J, Kurc T. Models, methods and middleware for grid-enabled multiphysics oil reservoir management Engineering With Computers. 22: 349-370. DOI: 10.1007/S00366-006-0035-9  0.352
2005 Bozdaǧ D, Özgüner F, Ekici E, Catalyurek U. A task duplication based scheduling algorithm using partial schedules Proceedings of the International Conference On Parallel Processing. 2005: 630-637. DOI: 10.1109/ICPP.2005.15  0.345
2005 Weng L, Catalyurek U, Kurc T, Agrawal G, Saltz J. Servicing range queries on multidimensional datasets with partial replicas 2005 Ieee International Symposium On Cluster Computing and the Grid, Ccgrid 2005. 2: 726-733. DOI: 10.1109/CCGRID.2005.1558635  0.301
2004 Aykanat C, Pinar A, Çatalyürek UV. Permuting sparse rectangular matrices into block-diagonal form Siam Journal On Scientific Computing. 25: 1860-1879. DOI: 10.1137/S1064827502401953  0.344
2003 Narayanan S, Kurc T, Catalyurek U, Saltz J. Database support for data-driven scientific applications in the grid Parallel Processing Letters. 13: 245-271. DOI: 10.1142/S0129626403001264  0.337
2002 Catalyurek U, Stahlberg E, Ferreira R, Kurc T, Saltz J. Improving performance of multiple sequence alignment analysis in multi-client environments Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2002. 183. DOI: 10.1109/IPDPS.2002.1016584  0.318
2001 Kurc T, Çatalyürek U, Chang C, Sussman A, Saltz J. Visualization of large data sets with the active data repository Ieee Computer Graphics and Applications. 21: 24-33. DOI: 10.1109/38.933521  0.375
1999 Catalyurek U, Aykanat C. Hypergraph-partitioning-based decomposition for parallel sparse-matrix vector multiplication Ieee Transactions On Parallel and Distributed Systems. 10: 673-693. DOI: 10.1109/71.780863  0.371
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