Judith Eisen - Publications

Affiliations: 
University of Oregon, Eugene, OR, United States 

339 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Goode C, Voeun M, Ncube D, Eisen J, Washbourne P, Tallafuss A. Late onset of Synaptotagmin 2a expression at synapses relevant to social behavior. The Journal of Comparative Neurology. PMID 33491202 DOI: 10.1002/cne.25084  1
2019 Ganz J, Melancon E, Wilson C, Amores A, Batzel P, Strader M, Braasch I, Diba P, Kuhlman JA, Postlethwait JH, Eisen JS. Epigenetic factors Dnmt1 and Uhrf1 coordinate intestinal development. Developmental Biology. PMID 31394080 DOI: 10.1016/J.Ydbio.2019.08.002  1
2018 Spiewak JE, Bain EJ, Liu J, Kou K, Sturiale SL, Patterson LB, Diba P, Eisen JS, Braasch I, Ganz J, Parichy DM. Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes. Plos Genetics. 14: e1007538. PMID 30226839 DOI: 10.1371/Journal.Pgen.1007538  1
2018 Stednitz SJ, McDermott EM, Ncube D, Tallafuss A, Eisen JS, Washbourne P. Forebrain Control of Behaviorally Driven Social Orienting in Zebrafish. Current Biology : Cb. 28: 2445-2451.e3. PMID 30057306 DOI: 10.1016/J.Cub.2018.06.016  1
2018 Troll JV, Hamilton MK, Abel ML, Ganz J, Bates JM, Stephens WZ, Melancon E, van der Vaart M, Meijer AH, Distel M, Eisen JS, Guillemin K. Microbiota promote secretory cell determination in the intestinal epithelium by modulating host Notch signaling. Development (Cambridge, England). 145. PMID 29475973 DOI: 10.1242/Dev.155317  1
2017 Stainier DYR, Raz E, Lawson ND, Ekker SC, Burdine RD, Eisen JS, Ingham PW, Schulte-Merker S, Yelon D, Weinstein BM, Mullins MC, Wilson SW, Ramakrishnan L, Amacher SL, Neuhauss SCF, et al. Guidelines for morpholino use in zebrafish. Plos Genetics. 13: e1007000. PMID 29049395 DOI: 10.1371/Journal.Pgen.1007000  1
2017 Fowler DK, Stewart S, Seredick S, Eisen JS, Stankunas K, Washbourne P. Correction: A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications. Plos One. 12: e0176543. PMID 28426753 DOI: 10.1371/journal.pone.0176543  1
2017 Rolig AS, Mittge EK, Ganz J, Troll JV, Melancon E, Wiles TJ, Alligood K, Stephens WZ, Eisen JS, Guillemin K. The enteric nervous system promotes intestinal health by constraining microbiota composition. Plos Biology. 15: e2000689. PMID 28207737 DOI: 10.1371/Journal.Pbio.2000689  1
2017 Melancon E, Gomez De La Torre Canny S, Sichel S, Kelly M, Wiles TJ, Rawls JF, Eisen JS, Guillemin K. Best practices for germ-free derivation and gnotobiotic zebrafish husbandry. Methods in Cell Biology. 138: 61-100. PMID 28129860 DOI: 10.1016/Bs.Mcb.2016.11.005  1
2016 Taylor CR, Montagne WA, Eisen JS, Ganz J. Molecular fingerprinting delineates progenitor populations in the developing zebrafish enteric nervous system. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 245: 1081-1096. PMID 27565577 DOI: 10.1002/dvdy.24438  1
2016 Fowler DK, Stewart S, Seredick S, Eisen JS, Stankunas K, Washbourne P. A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications. Plos One. 11: e0159277. PMID 27500400 DOI: 10.1371/Journal.Pone.0159277  1
2016 Wiles TJ, Jemielita M, Baker RP, Schlomann BH, Logan SL, Ganz J, Melancon E, Eisen JS, Guillemin K, Parthasarathy R. Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota. Plos Biology. 14: e1002517. PMID 27458727 DOI: 10.1371/Journal.Pbio.1002517  1
2016 Varga ZM, Lawrence C, Ekker SC, Eisen JS. Universal Healthcare for Zebrafish. Zebrafish. 13: S1-4. PMID 27351616 DOI: 10.1089/Zeb.2016.1311  1
2016 Lawrence C, Eisen JS, Varga ZM. Husbandry and Health Program Survey Synopsis. Zebrafish. 13: S5-7. PMID 27248568 DOI: 10.1089/Zeb.2016.1309  1
2015 Almagor T, Eisen J, Harris M, Levental-Roberts M, Hess O, Schwartz N, Zanani TE, Tenenbaum-Rakover Y. [IS THE PREVALENCE OF CHILDHOOD OBESITY IN ISRAEL SLOWING DOWN?]. Harefuah. 154: 620-3, 677. PMID 26742222  0.01
2015 Garnaat SL, Boisseau CL, Yip A, Sibrava NJ, Greenberg BD, Mancebo MC, McLaughlin NC, Eisen JL, Rasmussen SA. Predicting course of illness in patients with severe obsessive-compulsive disorder. The Journal of Clinical Psychiatry. 76: e1605-10. PMID 26717540 DOI: 10.4088/Jcp.14M09468  0.01
2015 Tallafuss A, Kelly M, Gay L, Gibson D, Batzel P, Karfilis KV, Eisen J, Stankunas K, Postlethwait JH, Washbourne P. Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation. Bmc Genomics. 16: 1100. PMID 26699284 DOI: 10.1186/S12864-015-2215-8  1
2015 Coil DA, Flanagan JC, Stump A, Alexiev A, Lang JM, Eisen JA. Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter. Peerj. 3: e1400. PMID 26587357 DOI: 10.7717/Peerj.1400  0.24
2015 Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes). Genome Announcements. 3. PMID 26586901 DOI: 10.1128/Genomea.01376-15  0.24
2015 Coil DA, Benardini JN, Eisen JA. Draft Genome Sequence of Bacillus safensis JPL-MERTA-8-2, Isolated from a Mars-Bound Spacecraft. Genome Announcements. 3. PMID 26586895 DOI: 10.1128/Genomea.01360-15  0.01
2015 Coil DA, Eisen JA. Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado. Genome Announcements. 3. PMID 26586867 DOI: 10.1128/Genomea.00856-15  0.04
2015 O'Flynn C, Deusch O, Darling A, Eisen JA, Wallis C, Davis I, Harris S. Comparative Genomics of the Genus Porphyromonas Identifies Adaptations for Heme Synthesis within the Prevalent Canine Oral Species Porphyromonas cangingivalis. Genome Biology and Evolution. PMID 26568374 DOI: 10.1093/Gbe/Evv220  0.01
2015 Jungblut AD, Hawes I, Mackey TJ, Krusor M, Doran PT, Sumner DY, Eisen JA, Hillman C, Goroncy AK. Microbial mat communities along an oxygen gradient in a perennially ice-covered Antarctic lake. Applied and Environmental Microbiology. PMID 26567300 DOI: 10.1128/Aem.02699-15  0.01
2015 Nayfach S, Bradley PH, Wyman SK, Laurent TJ, Williams A, Eisen JA, Pollard KS, Sharpton TJ. Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes. Plos Computational Biology. 11: e1004573. PMID 26565399 DOI: 10.1371/Journal.Pcbi.1004573  0.12
2015 Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria). Genome Announcements. 3. PMID 26543114 DOI: 10.1128/Genomea.01276-15  0.36
2015 Betts MN, Jospin G, Eisen JA, Coil DA. Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes). Genome Announcements. 3. PMID 26472846 DOI: 10.1128/Genomea.01209-15  0.16
2015 Whitman WB, Woyke T, Klenk HP, Zhou Y, Lilburn TG, Beck BJ, De Vos P, Vandamme P, Eisen JA, Garrity G, Hugenholtz P, Kyrpides NC. Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains. Standards in Genomic Sciences. 10: 26. PMID 26203337 DOI: 10.1186/S40793-015-0017-X  0.2
2015 Boundy-Mills K, Hess M, Bennett AR, Ryan M, Kang S, Nobles D, Eisen JA, Inderbitzin P, Sitepu IR, Torok T, Brown DR, Cho J, Wertz JE, Mukherjee S, Cady SL, et al. The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections. Applied and Environmental Microbiology. PMID 26092453 DOI: 10.1128/Aem.01176-15  0.08
2015 Dunitz MI, Lang JM, Jospin G, Darling AE, Eisen JA, Coil DA. Swabs to genomes: a comprehensive workflow. Peerj. 3: e960. PMID 26020012 DOI: 10.7717/Peerj.960  0.08
2015 Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA, Gilbert JA. Forensic analysis of the microbiome of phones and shoes. Microbiome. 3: 21. PMID 25969737 DOI: 10.1186/S40168-015-0082-9  0.01
2015 Hasan NA, Grim CJ, Lipp EK, Rivera IN, Chun J, Haley BJ, Taviani E, Choi SY, Hoq M, Munk AC, Brettin TS, Bruce D, Challacombe JF, Detter JC, Han CS, ... Eisen JA, et al. Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. Proceedings of the National Academy of Sciences of the United States of America. 112: E2813-9. PMID 25964331 DOI: 10.1073/Pnas.1503928112  0.2
2015 Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA. Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon. Frontiers in Cellular and Infection Microbiology. 5: 32. PMID 25905047 DOI: 10.3389/Fcimb.2015.00032  0.01
2015 Coil DA, Alexiev A, Wallis C, O'Flynn C, Deusch O, Davis I, Horsfall A, Kirkwood N, Jospin G, Eisen JA, Harris S, Darling AE. Draft genome sequences of 26 porphyromonas strains isolated from the canine oral microbiome. Genome Announcements. 3. PMID 25858832 DOI: 10.1128/Genomea.00187-15  0.04
2015 Bhatnagar S, Badger JH, Madupu R, Khouri HM, O'Connor EM, Robb FT, Ward NL, Eisen JA. Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178T (Phylum Thermodesulfobacteria). Genome Announcements. 3. PMID 25635017 DOI: 10.1128/Genomea.01490-14  0.04
2015 Bhatnagar S, Badger JH, Madupu R, Khouri HM, O'Connor EM, Robb FT, Ward NL, Eisen JA. Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347T (Phylum Nitrospirae). Genome Announcements. 3. PMID 25635016 DOI: 10.1128/Genomea.01489-14  0.01
2015 Ettinger CL, Shehata HR, Johnston-Monje D, Raizada MN, Eisen JA. Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum Proteobacteria). Genome Announcements. 3. PMID 25614570 DOI: 10.1128/Genomea.01462-14  0.12
2015 Ettinger CL, Mousa WM, Raizada MN, Eisen JA. Draft Genome Sequence of Enterobacter sp. Strain UCD-UG_FMILLET (Phylum Proteobacteria). Genome Announcements. 3. PMID 25614569 DOI: 10.1128/Genomea.01461-14  0.01
2015 Edwards J, Johnson C, Santos-Medellín C, Lurie E, Podishetty NK, Bhatnagar S, Eisen JA, Sundaresan V. Structure, variation, and assembly of the root-associated microbiomes of rice. Proceedings of the National Academy of Sciences of the United States of America. 112: E911-20. PMID 25605935 DOI: 10.1073/Pnas.1414592112  0.12
2014 Scheuner C, Tindall BJ, Lu M, Nolan M, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, Mavromatis K, Ivanova N, Pati A, Chen A, ... ... Eisen JA, et al. Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae. Standards in Genomic Sciences. 9: 10. PMID 25780503 DOI: 10.1186/1944-3277-9-10  0.08
2014 Lang JM, Eisen JA, Zivkovic AM. The microbes we eat: abundance and taxonomy of microbes consumed in a day's worth of meals for three diet types. Peerj. 2: e659. PMID 25538865 DOI: 10.7717/Peerj.659  0.08
2014 Dunitz MI, Coil DA, Jospin G, Eisen JA, Adams JY. Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients. Genome Announcements. 2. PMID 25523766 DOI: 10.1128/Genomea.01278-14  0.2
2014 Becker EA, Seitzer PM, Tritt A, Larsen D, Krusor M, Yao AI, Wu D, Madern D, Eisen JA, Darling AE, Facciotti MT. Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response. Plos Genetics. 10: e1004784. PMID 25393412 DOI: 10.1371/Journal.Pgen.1004784  0.08
2014 Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM. The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis. Bmc Genomics. 15: 924. PMID 25342549 DOI: 10.1186/1471-2164-15-924  0.16
2014 Seredick S, Hutchinson SA, Van Ryswyk L, Talbot JC, Eisen JS. Lhx3 and Lhx4 suppress Kolmer-Agduhr interneuron characteristics within zebrafish axial motoneurons. Development (Cambridge, England). 141: 3900-9. PMID 25231761 DOI: 10.1242/Dev.105718  1
2014 Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, ... ... Eisen JA, et al. Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring. Standards in Genomic Sciences. 9: 1105-17. PMID 25197486 DOI: 10.4056/Sigs.3016383  0.08
2014 Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. Standards in Genomic Sciences. 9: 1076-88. PMID 25197484 DOI: 10.4056/Sigs.5138968  0.16
2014 Kyrpides NC, Woyke T, Eisen JA, Garrity G, Lilburn TG, Beck BJ, Whitman WB, Hugenholtz P, Klenk HP. Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project. Standards in Genomic Sciences. 9: 1278-84. PMID 25197443 DOI: 10.4056/Sigs.5068949  0.08
2014 Holland-Moritz HE, Coil DA, Badger JH, Dmitrov GI, Khouri H, Ward NL, Robb FT, Eisen JA. Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1. Genome Announcements. 2. PMID 25146141 DOI: 10.1128/Genomea.00833-14  0.04
2014 Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, et al. Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. Plos Biology. 12: e1001920. PMID 25093819 DOI: 10.1371/Journal.Pbio.1001920  0.01
2014 Lee RD, Jospin G, Coil DA, Eisen JA. Draft Genome Sequence of the Endosymbiont "Candidatus Ruthia magnifica" UCD-CM (Phylum Proteobacteria). Genome Announcements. 2. PMID 25035337 DOI: 10.1128/Genomea.00717-14  0.48
2014 Bik HM, Coil DA, Eisen JA. microBEnet: lessons learned from building an interdisciplinary scientific community in the online sphere. Plos Biology. 12: e1001884. PMID 24937755 DOI: 10.1371/Journal.Pbio.1001884  0.12
2014 Beitel CW, Froenicke L, Lang JM, Korf IF, Michelmore RW, Eisen JA, Darling AE. Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products. Peerj. 2: e415. PMID 24918035 DOI: 10.7717/Peerj.415  0.01
2014 Alexiev A, Coil DA, Badger JH, Enticknap J, Ward N, Robb FT, Eisen JA. Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265. Genome Announcements. 2. PMID 24831154 DOI: 10.1128/Genomea.00470-14  0.04
2014 Tokajian S, Eisen JA, Jospin G, Coil DA. Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon. Genome Announcements. 2. PMID 24831139 DOI: 10.1128/Genomea.00358-14  0.08
2014 Dunitz MI, James PM, Jospin G, Eisen JA, Coil DA, Chandler JA. Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae. Genome Announcements. 2. PMID 24762940 DOI: 10.1128/Genomea.00349-14  0.04
2014 Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA. Draft Genome Sequences of Extended-Spectrum β-Lactamase-Producing Escherichia coli Strains Isolated from Patients in Lebanon. Genome Announcements. 2. PMID 24558252 DOI: 10.1128/Genomea.00123-14  0.04
2014 Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA. Draft Genome Sequence of Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae Isolated from a Patient in Lebanon. Genome Announcements. 2. PMID 24558251 DOI: 10.1128/Genomea.00121-14  0.01
2014 Coil DA, Badger JH, Forberger HC, Riggs F, Madupu R, Fedorova N, Ward N, Robb FT, Eisen JA. Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12. Genome Announcements. 2. PMID 24558247 DOI: 10.1128/Genomea.00109-14  0.01
2014 Van Ryswyk L, Simonson L, Eisen JS. The role of inab in axon morphology of an identified zebrafish motoneuron. Plos One. 9: e88631. PMID 24533123 DOI: 10.1371/journal.pone.0088631  1
2014 Darling AE, Jospin G, Lowe E, Matsen FA, Bik HM, Eisen JA. PhyloSift: phylogenetic analysis of genomes and metagenomes. Peerj. 2: e243. PMID 24482762 DOI: 10.7717/Peerj.243  0.01
2014 Wilbanks EG, Jaekel U, Salman V, Humphrey PT, Eisen JA, Facciotti MT, Buckley DH, Zinder SH, Druschel GK, Fike DA, Orphan VJ. Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh. Environmental Microbiology. 16: 3398-415. PMID 24428801 DOI: 10.1111/1462-2920.12388  0.01
2014 Eisen JA, Ganley E, MacCallum CJ. Open science and reporting animal studies: who's accountable? Plos Biology. 12: e1001757. PMID 24409097 DOI: 10.1371/Journal.Pbio.1001757  0.01
2014 Glass EM, Dribinsky Y, Yilmaz P, Levin H, Van Pelt R, Wendel D, Wilke A, Eisen JA, Huse S, Shipanova A, Sogin M, Stajich J, Knight R, Meyer F, Schriml LM. MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment. The Isme Journal. 8: 1-3. PMID 24152717 DOI: 10.1038/Ismej.2013.176  0.04
2014 Eisen JB. An open access distribution tariff: Removing barriers to innovation on the smart grid Ucla Law Review. 61: 1712-1770.  0.01
2013 Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl. Standards in Genomic Sciences. 9: 83-92. PMID 24501647 DOI: 10.4056/Sigs.4338002  0.04
2013 Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio. Standards in Genomic Sciences. 9: 57-70. PMID 24501645 DOI: 10.4056/Sigs.4237901  0.04
2013 Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, et al. Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013. Standards in Genomic Sciences. 8: 561-70. PMID 24501639 DOI: 10.4056/Sigs.4638348  0.01
2013 Coil DA, Lo JR, Chen R, Ward N, Robb FT, Eisen JA. Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain DSM 11915. Genome Announcements. 1. PMID 24233593 DOI: 10.1128/Genomea.00953-13  0.08
2013 Wu D, Jospin G, Eisen JA. Systematic identification of gene families for use as "markers" for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major subgroups. Plos One. 8: e77033. PMID 24146954 DOI: 10.1371/Journal.Pone.0077033  0.32
2013 Martin ME, Bhatnagar S, George MD, Paster BJ, Canfield DR, Eisen JA, Solnick JV. The impact of Helicobacter pylori infection on the gastric microbiota of the rhesus macaque. Plos One. 8: e76375. PMID 24116104 DOI: 10.1371/Journal.Pone.0076375  0.01
2013 Eisen JA, Maccallum CJ, Neylon C. Expert failure: re-evaluating research assessment. Plos Biology. 11: e1001677. PMID 24115910 DOI: 10.1371/Journal.Pbio.1001677  0.01
2013 Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva. Standards in Genomic Sciences. 8: 228-38. PMID 23991255 DOI: 10.4056/Sigs.3617113  0.04
2013 Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)). Standards in Genomic Sciences. 8: 177-87. PMID 23991250 DOI: 10.4056/Sigs.3637201  0.04
2013 Liolos K, Abt B, Scheuner C, Teshima H, Held B, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift. Standards in Genomic Sciences. 8: 165-76. PMID 23991249 DOI: 10.4056/Sigs.3607108  0.08
2013 Castelle CJ, Hug LA, Wrighton KC, Thomas BC, Williams KH, Wu D, Tringe SG, Singer SW, Eisen JA, Banfield JF. Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nature Communications. 4: 2120. PMID 23979677 DOI: 10.1038/Ncomms3120  0.01
2013 Abt B, Göker M, Scheuner C, Han C, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, ... ... Eisen JA, et al. Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema. Standards in Genomic Sciences. 8: 88-105. PMID 23961314 DOI: 10.4056/Sigs.3096473  0.04
2013 Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)). Standards in Genomic Sciences. 8: 47-57. PMID 23961311 DOI: 10.4056/Sigs.3547050  0.04
2013 Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C, Cheng JF, Tapia R, Goodwin LA, Bruce D, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, ... ... Eisen JA, et al. High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)). Standards in Genomic Sciences. 8: 37-46. PMID 23961310 DOI: 10.4056/Sigs.3537045  0.08
2013 Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)). Standards in Genomic Sciences. 8: 26-36. PMID 23961309 DOI: 10.4056/Sigs.3527032  0.04
2013 Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug). Standards in Genomic Sciences. 8: 15-25. PMID 23961308 DOI: 10.4056/Sigs.3507020  0.04
2013 Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, ... Eisen JA, et al. Insights into the phylogeny and coding potential of microbial dark matter. Nature. 499: 431-7. PMID 23851394 DOI: 10.1038/Nature12352  0.08
2013 Holland-Moritz HE, Bevans DR, Lang JM, Darling AE, Eisen JA, Coil DA. Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria). Genome Announcements. 1. PMID 23792744 DOI: 10.1128/Genomea.00325-13  0.01
2013 Flanagan JC, Lang JM, Darling AE, Eisen JA, Coil DA. Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria). Genome Announcements. 1. PMID 23682147 DOI: 10.1128/Genomea.00244-13  0.32
2013 Diep AL, Lang JM, Darling AE, Eisen JA, Coil DA. Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria). Genome Announcements. 1. PMID 23661480 DOI: 10.1128/Genomea.00197-13  0.08
2013 Coil DA, Doctor JI, Lang JM, Darling AE, Eisen JA. Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria). Genome Announcements. 1. PMID 23661474 DOI: 10.1128/Genomea.00172-13  0.01
2013 Lang JM, Darling AE, Eisen JA. Phylogeny of bacterial and archaeal genomes using conserved genes: supertrees and supermatrices. Plos One. 8: e62510. PMID 23638103 DOI: 10.1371/Journal.Pone.0062510  0.08
2013 Bendiks ZA, Lang JM, Darling AE, Eisen JA, Coil DA. Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria). Genome Announcements. 1: e0012013. PMID 23516225 DOI: 10.1128/Genomea.00120-13  0.08
2013 Lo JR, Lang JM, Darling AE, Eisen JA, Coil DA. Draft genome sequence of an Actinobacterium, Brachybacterium muris strain UCD-AY4. Genome Announcements. 1: e0008613. PMID 23516213 DOI: 10.1128/Genomea.00086-13  0.08
2013 Rands CM, Darling A, Fujita M, Kong L, Webster MT, Clabaut C, Emes RD, Heger A, Meader S, Hawkins MB, Eisen MB, Teiling C, Affourtit J, Boese B, Grant PR, ... ... Eisen JA, et al. Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. Bmc Genomics. 14: 95. PMID 23402223 DOI: 10.1186/1471-2164-14-95  0.04
2013 Simonson LW, Ganz J, Melancon E, Eisen JS. Characterization of enteric neurons in wild-type and mutant zebrafish using semi-automated cell counting and co-expression analysis. Zebrafish. 10: 147-53. PMID 23297729 DOI: 10.1089/zeb.2012.0811  1
2013 Shih PM, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, Calteau A, Cai F, Tandeau de Marsac N, Rippka R, Herdman M, Sivonen K, Coursin T, Laurent T, Goodwin L, ... ... Eisen JA, et al. Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 110: 1053-8. PMID 23277585 DOI: 10.1073/Pnas.1217107110  0.24
2013 Traag BA, Pugliese A, Eisen JA, Losick R. Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis. Journal of Bacteriology. 195: 253-60. PMID 23123912 DOI: 10.1128/Jb.01778-12  0.01
2013 Eisen JB. Smart regulation and federalism for the smart grid Harvard Environmental Law Review. 37: 1-56.  0.01
2012 Eisen JA. Badomics words and the power and peril of the ome-meme. Gigascience. 1: 6. PMID 23587201 DOI: 10.1186/2047-217X-1-6  0.01
2012 Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)). Standards in Genomic Sciences. 7: 120-30. PMID 23450211 DOI: 10.4056/Sigs.3296896  0.04
2012 Riedel T, Held B, Nolan M, Lucas S, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)). Standards in Genomic Sciences. 7: 107-19. PMID 23450183 DOI: 10.4056/Sigs.3216895  0.04
2012 Anderson I, Munk C, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)). Standards in Genomic Sciences. 7: 210-20. PMID 23408178 DOI: 10.4056/Sigs.3117229  0.08
2012 Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)). Standards in Genomic Sciences. 6: 1-13. PMID 23407703 DOI: 10.4056/Sigs.2736042  0.08
2012 Kembel SW, Wu M, Eisen JA, Green JL. Incorporating 16S gene copy number information improves estimates of microbial diversity and abundance. Plos Computational Biology. 8: e1002743. PMID 23133348 DOI: 10.1371/Journal.Pcbi.1002743  0.32
2012 Seredick SD, Van Ryswyk L, Hutchinson SA, Eisen JS. Zebrafish Mnx proteins specify one motoneuron subtype and suppress acquisition of interneuron characteristics. Neural Development. 7: 35. PMID 23122226 DOI: 10.1186/1749-8104-7-35  1
2012 Sharpton TJ, Jospin G, Wu D, Langille MG, Pollard KS, Eisen JA. Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource. Bmc Bioinformatics. 13: 264. PMID 23061897 DOI: 10.1186/1471-2105-13-264  0.24
2012 Tritt A, Eisen JA, Facciotti MT, Darling AE. An integrated pipeline for de novo assembly of microbial genomes. Plos One. 7: e42304. PMID 23028432 DOI: 10.1371/Journal.Pone.0042304  0.08
2012 Chandler JA, Eisen JA, Kopp A. Yeast communities of diverse Drosophila species: comparison of two symbiont groups in the same hosts. Applied and Environmental Microbiology. 78: 7327-36. PMID 22885750 DOI: 10.1128/Aem.01741-12  0.04
2012 Lynch EA, Langille MG, Darling A, Wilbanks EG, Haltiner C, Shao KS, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT. Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux. Plos One. 7: e41389. PMID 22848480 DOI: 10.1371/Journal.Pone.0041389  0.01
2012 Phillips KA, Pinto A, Hart AS, Coles ME, Eisen JL, Menard W, Rasmussen SA. A comparison of insight in body dysmorphic disorder and obsessive-compulsive disorder. Journal of Psychiatric Research. 46: 1293-9. PMID 22819678 DOI: 10.1016/J.Jpsychires.2012.05.016  0.01
2012 Copeland A, Zeytun A, Yassawong M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Mavromatis K, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). Standards in Genomic Sciences. 6: 240-50. PMID 22768367 DOI: 10.4056/Sigs.2756060  0.01
2012 Göker M, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)). Standards in Genomic Sciences. 6: 230-9. PMID 22768366 DOI: 10.4056/Sigs.2726028  0.01
2012 Mavromatis K, Chertkov O, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Bruce D, Goodwin LA, Pitluck S, Huntemann M, Liolios K, ... ... Eisen JA, et al. Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). Standards in Genomic Sciences. 6: 210-9. PMID 22768364 DOI: 10.4056/Sigs.2816096  0.08
2012 Abt B, Han C, Scheuner C, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta. Standards in Genomic Sciences. 6: 194-209. PMID 22768363 DOI: 10.4056/Sigs.2796069  0.16
2012 Huntemann M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)). Standards in Genomic Sciences. 6: 185-93. PMID 22768362 DOI: 10.4056/Sigs.2786069  0.04
2012 Anderson I, Held B, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)). Standards in Genomic Sciences. 6: 174-84. PMID 22768361 DOI: 10.4056/Sigs.2746047  0.01
2012 Anderson I, Saunders E, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T)). Standards in Genomic Sciences. 6: 155-64. PMID 22768359 DOI: 10.4056/Sigs.2665915  0.04
2012 Copeland A, Zhang X, Misra M, Lapidus A, Nolan M, Lucas S, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)). Standards in Genomic Sciences. 6: 145-54. PMID 22768358 DOI: 10.4056/Sigs.2475579  0.04
2012 Han C, Kotsyurbenko O, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)). Standards in Genomic Sciences. 6: 94-103. PMID 22675602 DOI: 10.4056/Sigs.2456004  0.04
2012 Copeland A, Gu W, Yasawong M, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin LA, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney. Standards in Genomic Sciences. 6: 21-30. PMID 22675595 DOI: 10.4056/Sigs.2435521  0.04
2012 Langille MG, Laird MR, Hsiao WW, Chiu TA, Eisen JA, Brinkman FS. MicrobeDB: a locally maintainable database of microbial genomic sequences. Bioinformatics (Oxford, England). 28: 1947-8. PMID 22576174 DOI: 10.1093/Bioinformatics/Bts273  0.12
2012 Tallafuss A, Gibson D, Morcos P, Li Y, Seredick S, Eisen J, Washbourne P. Turning gene function ON and OFF using sense and antisense photo-morpholinos in zebrafish. Development (Cambridge, England). 139: 1691-9. PMID 22492359 DOI: 10.1242/dev.072702  1
2012 Wu M, Chatterji S, Eisen JA. Accounting for alignment uncertainty in phylogenomics. Plos One. 7: e30288. PMID 22272325 DOI: 10.1371/Journal.Pone.0030288  0.12
2012 Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, Armbrust EV, Eisen JA, Worden AZ. Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges. Environmental Microbiology. 14: 162-76. PMID 21914098 DOI: 10.1111/J.1462-2920.2011.02576.X  0.2
2012 Pinto A, Eisen JL. Personality Features of OCD and Spectrum Conditions The Oxford Handbook of Obsessive Compulsive and Spectrum Disorders. DOI: 10.1093/oxfordhb/9780195376210.013.0038  0.08
2012 Corsi RL, Eisen J, Levin H, Kinney K. Microbiomes of built environments: 2011 Symposium highlights and workgroup recommendations 10th International Conference On Healthy Buildings 2012. 1: 565-566.  0.04
2012 Eisen J. Israel and Hamas Economist (United Kingdom). 405.  0.01
2011 Göker M, Daligault H, Mwirichia R, Lapidus A, Lucas S, Deshpande S, Pagani I, Tapia R, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent. Standards in Genomic Sciences. 5: 407-15. PMID 22675590 DOI: 10.4056/Sigs.2465574  0.16
2011 Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, ... ... Eisen JA, et al. Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)). Standards in Genomic Sciences. 5: 398-406. PMID 22675589 DOI: 10.4056/Sigs.2344929  0.04
2011 Fass JN, Joshi NA, Couvillion MT, Bowen J, Gorovsky MA, Hamilton EP, Orias E, Hong K, Coyne RS, Eisen JA, Chalker DL, Lin D, Collins K. Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila. G3 (Bethesda, Md.). 1: 515-22. PMID 22384362 DOI: 10.1534/G3.111.000927  0.04
2011 Eisen J. Supreme Court rules on safe injection site. Health Law in Canada. 32: 36-7. PMID 22259976  0.01
2011 Klenk HP, Lapidus A, Chertkov O, Copeland A, Del Rio TG, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Bruce D, Goodwin L, Pitluck S, Pati A, ... ... Eisen JA, et al. Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Standards in Genomic Sciences. 5: 121-34. PMID 22180816 DOI: 10.4056/Sigs.2144922  0.04
2011 Chang YJ, Land M, Hauser L, Chertkov O, Del Rio TG, Nolan M, Copeland A, Tice H, Cheng JF, Lucas S, Han C, Goodwin L, Pitluck S, Ivanova N, Ovchinikova G, ... ... Eisen JA, et al. Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21). Standards in Genomic Sciences. 5: 97-111. PMID 22180814 DOI: 10.4056/Sigs.2114901  0.08
2011 Lapidus A, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, ... ... Eisen JA, et al. Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10). Standards in Genomic Sciences. 5: 86-96. PMID 22180813 DOI: 10.4056/Sigs.2235024  0.08
2011 Pati A, Gronow S, Lu M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20). Standards in Genomic Sciences. 5: 41-9. PMID 22180809 DOI: 10.4056/Sigs.2164949  0.04
2011 Liolios K, Sikorski J, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113). Standards in Genomic Sciences. 5: 30-40. PMID 22180808 DOI: 10.4056/Sigs.2154937  0.04
2011 Woyke T, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). Standards in Genomic Sciences. 5: 21-9. PMID 22180807 DOI: 10.4056/Sigs.2124912  0.04
2011 Hale LA, Fowler DK, Eisen JS. Netrin signaling breaks the equivalence between two identified zebrafish motoneurons revealing a new role of intermediate targets. Plos One. 6: e25841. PMID 22003409 DOI: 10.1371/Journal.Pone.0025841  1
2011 Chandler JA, Lang JM, Bhatnagar S, Eisen JA, Kopp A. Bacterial communities of diverse Drosophila species: ecological context of a host-microbe model system. Plos Genetics. 7: e1002272. PMID 21966276 DOI: 10.1371/Journal.Pgen.1002272  0.08
2011 Kembel SW, Eisen JA, Pollard KS, Green JL. The phylogenetic diversity of metagenomes. Plos One. 6: e23214. PMID 21912589 DOI: 10.1371/Journal.Pone.0023214  0.04
2011 Göker M, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2). Standards in Genomic Sciences. 4: 393-401. PMID 21886866 DOI: 10.4056/Sigs.2064705  0.12
2011 Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A). Standards in Genomic Sciences. 4: 381-92. PMID 21886865 DOI: 10.4056/Sigs.2014648  0.01
2011 Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). Standards in Genomic Sciences. 4: 371-80. PMID 21886864 DOI: 10.4056/Sigs.2004684  0.12
2011 Han C, Gronow S, Teshima H, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Zeytun A, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Treponema succinifaciens type strain (6091). Standards in Genomic Sciences. 4: 361-70. PMID 21886863 DOI: 10.4056/Sigs.1984594  0.04
2011 Daligault H, Lapidus A, Zeytun A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Haliscomenobacter hydrossis type strain (O). Standards in Genomic Sciences. 4: 352-60. PMID 21886862 DOI: 10.4056/Sigs.1964579  0.01
2011 Munk AC, Lapidus A, Lucas S, Nolan M, Tice H, Cheng JF, Del Rio TG, Goodwin L, Pitluck S, Liolios K, Huntemann M, Ivanova N, Mavromatis K, Mikhailova N, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Tsukamurella paurometabola type strain (no. 33). Standards in Genomic Sciences. 4: 342-51. PMID 21886861 DOI: 10.4056/Sigs.1894556  0.12
2011 Sikorski J, Teshima H, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Ovchinikova G, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Mahella australiensis type strain (50-1 BON). Standards in Genomic Sciences. 4: 331-41. PMID 21886860 DOI: 10.4056/Sigs.1864526  0.08
2011 Anderson I, Sikorski J, Zeytun A, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1). Standards in Genomic Sciences. 4: 322-30. PMID 21886859 DOI: 10.4056/Sigs.1844518  0.08
2011 Ivanova N, Sikorski J, Chertkov O, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL). Standards in Genomic Sciences. 4: 312-21. PMID 21886858 DOI: 10.4056/Sigs.1824509  0.01
2011 Huntemann M, Lu M, Nolan M, Lapidus A, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)). Standards in Genomic Sciences. 4: 303-11. PMID 21886857 DOI: 10.4056/Sigs.1814460  0.12
2011 Mindell DP, Fisher BL, Roopnarine P, Eisen J, Mace GM, Page RD, Pyle RL. Aggregating, tagging and integrating biodiversity research. Plos One. 6: e19491. PMID 21829594 DOI: 10.1371/Journal.Pone.0019491  0.01
2011 Sibrava NJ, Boisseau CL, Mancebo MC, Eisen JL, Rasmussen SA. Prevalence and clinical characteristics of mental rituals in a longitudinal clinical sample of obsessive-compulsive disorder. Depression and Anxiety. 28: 892-8. PMID 21818825 DOI: 10.1002/da.20869  0.01
2011 Darling AE, Tritt A, Eisen JA, Facciotti MT. Mauve assembly metrics. Bioinformatics (Oxford, England). 27: 2756-7. PMID 21810901 DOI: 10.1093/Bioinformatics/Btr451  0.12
2011 Land M, Held B, Gronow S, Abt B, Lucas S, Del Rio TG, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139). Standards in Genomic Sciences. 4: 233-43. PMID 21677860 DOI: 10.4056/Sigs.1784330  0.12
2011 Pati A, Zhang X, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Oceanithermus profundus type strain (506). Standards in Genomic Sciences. 4: 210-20. PMID 21677858 DOI: 10.4056/Sigs.1734292  0.08
2011 Göker M, Gronow S, Zeytun A, Nolan M, Lucas S, Lapidus A, Hammon N, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Ovchinikova G, ... ... Eisen JA, et al. Complete genome sequence of Odoribacter splanchnicus type strain (1651/6). Standards in Genomic Sciences. 4: 200-9. PMID 21677857 DOI: 10.4056/Sigs.1714269  0.08
2011 Gronow S, Held B, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Deshpande S, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Bacteroides salanitronis type strain (BL78). Standards in Genomic Sciences. 4: 191-9. PMID 21677856 DOI: 10.4056/Sigs.1704212  0.08
2011 Wirth R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ioanna P, ... ... Eisen JA, et al. Complete genome sequence of Desulfurococcus mucosus type strain (O7/1). Standards in Genomic Sciences. 4: 173-82. PMID 21677854 DOI: 10.4056/Sigs.1644004  0.08
2011 Pukall R, Zeytun A, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Deinococcus maricopensis type strain (LB-34). Standards in Genomic Sciences. 4: 163-72. PMID 21677853 DOI: 10.4056/Sigs.1633949  0.04
2011 Pagani I, Chertkov O, Lapidus A, Lucas S, Del Rio TG, Tice H, Copeland A, Cheng JF, Nolan M, Saunders E, Pitluck S, Held B, Goodwin L, Liolios K, Ovchinikova G, ... ... Eisen JA, et al. Complete genome sequence of Marivirga tractuosa type strain (H-43). Standards in Genomic Sciences. 4: 154-62. PMID 21677852 DOI: 10.4056/Sigs.1623941  0.16
2011 Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845). Standards in Genomic Sciences. 4: 144-53. PMID 21677851 DOI: 10.4056/sigs.1553862  0.12
2011 Zeytun A, Sikorski J, Nolan M, Lapidus A, Lucas S, Han J, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6). Standards in Genomic Sciences. 4: 131-43. PMID 21677850 DOI: 10.4056/Sigs.1463589  0.01
2011 Martiny JB, Eisen JA, Penn K, Allison SD, Horner-Devine MC. Drivers of bacterial beta-diversity depend on spatial scale. Proceedings of the National Academy of Sciences of the United States of America. 108: 7850-4. PMID 21518859 DOI: 10.1073/Pnas.1016308108  0.04
2011 Pagani I, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Chertkov O, Davenport K, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Desulfobulbus propionicus type strain (1pr3). Standards in Genomic Sciences. 4: 100-10. PMID 21475592 DOI: 10.4056/Sigs.1613929  0.04
2011 Ivanova N, Rohde C, Munk C, Nolan M, Lucas S, Del Rio TG, Tice H, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Truepera radiovictrix type strain (RQ-24). Standards in Genomic Sciences. 4: 91-9. PMID 21475591 DOI: 10.4056/Sigs.1563919  0.16
2011 Lang E, Teshima H, Lucas S, Lapidus A, Hammon N, Deshpande S, Nolan M, Cheng JF, Pitluck S, Liolios K, Pagani I, Mikhailova N, Ivanova N, Mavromatis K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Weeksella virosa type strain (9751). Standards in Genomic Sciences. 4: 81-90. PMID 21475590 DOI: 10.4056/Sigs.1603927  0.08
2011 Abt B, Lu M, Misra M, Han C, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Cellulophaga algicola type strain (IC166). Standards in Genomic Sciences. 4: 72-80. PMID 21475589 DOI: 10.4056/Sigs.1543845  0.08
2011 Göker M, Cleland D, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Isosphaera pallida type strain (IS1B). Standards in Genomic Sciences. 4: 63-71. PMID 21475588 DOI: 10.4056/Sigs.1533840  0.12
2011 Pitluck S, Sikorski J, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1). Standards in Genomic Sciences. 4: 54-62. PMID 21475587 DOI: 10.4056/Sigs.1523807  0.12
2011 Pati A, Gronow S, Zeytun A, Lapidus A, Nolan M, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Bacteroides helcogenes type strain (P 36-108). Standards in Genomic Sciences. 4: 45-53. PMID 21475586 DOI: 10.4056/Sigs.1513795  0.01
2011 Gronow S, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Paludibacter propionicigenes type strain (WB4). Standards in Genomic Sciences. 4: 36-44. PMID 21475585 DOI: 10.4056/Sigs.1503846  0.04
2011 Chertkov O, Sikorski J, Nolan M, Lapidus A, Lucas S, Del Rio TG, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Ovchinnikova G, ... ... Eisen JA, et al. Complete genome sequence of Thermomonospora curvata type strain (B9). Standards in Genomic Sciences. 4: 13-22. PMID 21475583 DOI: 10.4056/Sigs.1453580  0.04
2011 Abt B, Teshima H, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Pati A, Tapia R, ... ... Eisen JA, et al. Complete genome sequence of Leadbetterella byssophila type strain (4M15). Standards in Genomic Sciences. 4: 2-12. PMID 21475582 DOI: 10.4056/Sigs.1413518  0.16
2011 Wu D, Wu M, Halpern A, Rusch DB, Yooseph S, Frazier M, Venter JC, Eisen JA. Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees. Plos One. 6: e18011. PMID 21437252 DOI: 10.1371/Journal.Pone.0018011  0.2
2011 Sharpton TJ, Riesenfeld SJ, Kembel SW, Ladau J, O'Dwyer JP, Green JL, Eisen JA, Pollard KS. PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data. Plos Computational Biology. 7: e1001061. PMID 21283775 DOI: 10.1371/Journal.Pcbi.1001061  0.04
2011 Honjo Y, Payne L, Eisen JS. Somatosensory mechanisms in zebrafish lacking dorsal root ganglia. Journal of Anatomy. 218: 271-6. PMID 21235542 DOI: 10.1111/j.1469-7580.2010.01337.x  1
2011 Han C, Mwirichia R, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin L, Pitluck S, Huntemann M, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR T) Standards in Genomic Sciences. 4: 371-380. DOI: 10.4056/sigs.2004648  0.04
2011 Mavromatis K, Lu M, Misra M, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of riemerella anatipestifer type strain (ATCC 11845 T) Standards in Genomic Sciences. 4: 144-153. DOI: 10.4056/Sigs.1553865  0.08
2010 Brambilla E, Djao OD, Daligault H, Lapidus A, Lucas S, Hammon N, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847). Standards in Genomic Sciences. 3: 203-11. PMID 21304750 DOI: 10.4056/Sigs.1183143  0.2
2010 Sikorski J, Munk C, Lapidus A, Ngatchou Djao OD, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Han C, Cheng JF, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Sulfurimonas autotrophica type strain (OK10). Standards in Genomic Sciences. 3: 194-202. PMID 21304749 DOI: 10.4056/Sigs.1173118  0.08
2010 Nolan M, Sikorski J, Davenport K, Lucas S, Del Rio TG, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, ... ... Eisen JA, et al. Complete genome sequence of Ferrimonas balearica type strain (PAT). Standards in Genomic Sciences. 3: 174-82. PMID 21304747 DOI: 10.4056/Sigs.1161239  0.04
2010 Roeselers G, Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, ... Eisen JA, et al. Complete genome sequence of Candidatus Ruthia magnifica. Standards in Genomic Sciences. 3: 163-73. PMID 21304746 DOI: 10.4056/Sigs.1103048  0.01
2010 Kiss H, Cleland D, Lapidus A, Lucas S, Del Rio TG, Nolan M, Tice H, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, ... ... Eisen JA, et al. Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1). Standards in Genomic Sciences. 3: 153-62. PMID 21304745 DOI: 10.4056/Sigs.1153107  0.08
2010 Mavromatis K, Yasawong M, Chertkov O, Lapidus A, Lucas S, Nolan M, Del Rio TG, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Tapia R, Han C, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228). Standards in Genomic Sciences. 3: 136-44. PMID 21304743 DOI: 10.4056/Sigs.1143106  0.08
2010 Yasawong M, Teshima H, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). Standards in Genomic Sciences. 3: 126-35. PMID 21304742 DOI: 10.4056/Sigs.1123072  0.04
2010 Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S, Nolan M, Glavina Del Rio T, Cheng JF, Bruce D, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Vulcanisaeta distributa type strain (IC-017). Standards in Genomic Sciences. 3: 117-25. PMID 21304741 DOI: 10.4056/Sigs.1113067  0.08
2010 Pitluck S, Yasawong M, Munk C, Nolan M, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter C, Tapia R, Han C, Goodwin L, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P). Standards in Genomic Sciences. 3: 108-16. PMID 21304740 DOI: 10.4056/Sigs.1133078  0.01
2010 Han C, Gu W, Zhang X, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Goodwin L, Pitluck S, Pagani I, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Thermaerobacter marianensis type strain (7p75a). Standards in Genomic Sciences. 3: 337-45. PMID 21304738 DOI: 10.4056/Sigs.1373474  0.2
2010 Sun H, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509). Standards in Genomic Sciences. 3: 325-36. PMID 21304737 DOI: 10.4056/Sigs.1363462  0.08
2010 Anderson I, Djao OD, Misra M, Chertkov O, Nolan M, Lucas S, Lapidus A, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Methanothermus fervidus type strain (V24S). Standards in Genomic Sciences. 3: 315-24. PMID 21304736 DOI: 10.4056/Sigs.1283367  0.08
2010 Sikorski J, Chertkov O, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1). Standards in Genomic Sciences. 3: 304-14. PMID 21304735 DOI: 10.4056/Sigs.1273360  0.08
2010 Del Rio TG, Chertkov O, Yasawong M, Lucas S, Deshpande S, Cheng JF, Detter C, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Intrasporangium calvum type strain (7 KIP). Standards in Genomic Sciences. 3: 294-303. PMID 21304734 DOI: 10.4056/Sigs.1263355  0.01
2010 Pitluck S, Yasawong M, Held B, Lapidus A, Nolan M, Copeland A, Lucas S, Del Rio TG, Tice H, Cheng JF, Chertkov O, Goodwin L, Tapia R, Han C, Liolios K, ... ... Eisen JA, et al. Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3). Standards in Genomic Sciences. 3: 285-93. PMID 21304733 DOI: 10.4056/Sigs.1253298  0.12
2010 Sun H, Spring S, Lapidus A, Davenport K, Del Rio TG, Tice H, Nolan M, Copeland A, Cheng JF, Lucas S, Tapia R, Goodwin L, Pitluck S, Ivanova N, Pagani I, ... ... Eisen JA, et al. Complete genome sequence of Desulfarculus baarsii type strain (2st14). Standards in Genomic Sciences. 3: 276-84. PMID 21304732 DOI: 10.4056/Sigs.1243258  0.12
2010 Djao OD, Zhang X, Lucas S, Lapidus A, Del Rio TG, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1). Standards in Genomic Sciences. 3: 268-75. PMID 21304731 DOI: 10.4056/Sigs.1233249  0.12
2010 Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, et al. Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. Standards in Genomic Sciences. 3: 243-8. PMID 21304727 DOI: 10.4056/Sigs.1433550  0.04
2010 Copeland A, Sikorski J, Lapidus A, Nolan M, Glavina T, Del Rio, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, ... ... Eisen JA, et al. Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Standards in Genomic Sciences. 2: 361-2. PMID 21304720 DOI: 10.4056/Sigs.992408  0.08
2010 von Jan M, Lapidus A, Del Rio TG, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Goodwin L, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Archaeoglobus profundus type strain (AV18). Standards in Genomic Sciences. 2: 327-46. PMID 21304717 DOI: 10.4056/Sigs.942153  0.12
2010 Liolios K, Sikorski J, Jando M, Lapidus A, Copeland A, Glavina T, Del Rio, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Woyke T, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Thermobispora bispora type strain (R51). Standards in Genomic Sciences. 2: 318-26. PMID 21304716 DOI: 10.4056/Sigs.962171  0.12
2010 Pati A, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Chertkov O, Bruce D, Tapia R, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Arcobacter nitrofigilis type strain (CI). Standards in Genomic Sciences. 2: 300-8. PMID 21304714 DOI: 10.4056/Sigs.912121  0.08
2010 Mavromatis K, Abt B, Brambilla E, Lapidus A, Copeland A, Deshpande S, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Woyke T, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24). Standards in Genomic Sciences. 2: 290-9. PMID 21304713 DOI: 10.4056/Sigs.952166  0.12
2010 Chertkov O, Sikorski J, Brambilla E, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Tapia R, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Aminobacterium colombiense type strain (ALA-1). Standards in Genomic Sciences. 2: 280-9. PMID 21304712 DOI: 10.4056/Sigs.902116  0.16
2010 Kiss H, Lang E, Lapidus A, Copeland A, Nolan M, Glavina Del Rio T, Chen F, Lucas S, Tice H, Cheng JF, Han C, Goodwin L, Pitluck S, Liolios K, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460). Standards in Genomic Sciences. 2: 270-9. PMID 21304711 DOI: 10.4056/Sigs.892105  0.16
2010 Pati A, Sikorski J, Gronow S, Munk C, Lapidus A, Copeland A, Glavina Del Tio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Brachyspira murdochii type strain (56-150). Standards in Genomic Sciences. 2: 260-9. PMID 21304710 DOI: 10.4056/Sigs.831993  0.04
2010 Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Thermosphaera aggregans type strain (M11TL). Standards in Genomic Sciences. 2: 245-59. PMID 21304709 DOI: 10.4056/Sigs.821804  0.2
2010 Clum A, Tindall BJ, Sikorski J, Ivanova N, Mavromatis K, Lucas S, Glavina Del Rio T, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, ... ... Eisen JA, et al. Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). Standards in Genomic Sciences. 2: 228-88. PMID 21304706 DOI: 10.4056/Sigs.881234  0.08
2010 Harmon-Smith M, Celia L, Chertkov O, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300). Standards in Genomic Sciences. 2: 220-7. PMID 21304705 DOI: 10.4056/Sigs.811799  0.04
2010 Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Mavromatis K, Ivanova N, Ovchinnikova G, ... ... Eisen JA, et al. Complete genome sequence of Conexibacter woesei type strain (ID131577). Standards in Genomic Sciences. 2: 212-9. PMID 21304704 DOI: 10.4056/Sigs.751339  0.16
2010 Sikorski J, Lapidus A, Copeland A, Misra M, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Jando M, Schneider S, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Segniliparus rotundus type strain (CDC 1076). Standards in Genomic Sciences. 2: 203-11. PMID 21304703 DOI: 10.4056/Sigs.791633  0.08
2010 Wirth R, Sikorski J, Brambilla E, Misra M, Lapidus A, Copeland A, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Tapia R, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Thermocrinis albus type strain (HI 11/12). Standards in Genomic Sciences. 2: 194-202. PMID 21304702 DOI: 10.4056/Sigs.761490  0.16
2010 Pukall R, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Labutti K, Pati A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Kribbella flavida type strain (IFO 14399). Standards in Genomic Sciences. 2: 186-93. PMID 21304701 DOI: 10.4056/Sigs.731321  0.04
2010 Lail K, Sikorski J, Saunders E, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Spirosoma linguale type strain (1). Standards in Genomic Sciences. 2: 176-85. PMID 21304700 DOI: 10.4056/Sigs.741334  0.12
2010 Tice H, Mayilraj S, Sims D, Lapidus A, Nolan M, Lucas S, Glavina Del Rio T, Copeland A, Cheng JF, Meincke L, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Nakamurella multipartita type strain (Y-104). Standards in Genomic Sciences. 2: 168-75. PMID 21304699 DOI: 10.4056/Sigs.721316  0.01
2010 Ivanova N, Sikorski J, Jando M, Munk C, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Geodermatophilus obscurus type strain (G-20). Standards in Genomic Sciences. 2: 158-67. PMID 21304698 DOI: 10.4056/Sigs.711311  0.08
2010 Sikorski J, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Ovchinnikova G, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Sulfurospirillum deleyianum type strain (5175). Standards in Genomic Sciences. 2: 149-57. PMID 21304697 DOI: 10.4056/Sigs.671209  0.16
2010 Labutti K, Mayilraj S, Clum A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Goodwin L, ... ... Eisen JA, et al. Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207). Standards in Genomic Sciences. 3: 85-92. PMID 21304695 DOI: 10.4056/Sigs.1092865  0.12
2010 Göker M, Held B, Lucas S, Nolan M, Yasawong M, Glavina Del Rio T, Tice H, Cheng JF, Bruce D, Detter JC, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, ... ... Eisen JA, et al. Complete genome sequence of Olsenella uli type strain (VPI D76D-27C). Standards in Genomic Sciences. 3: 76-84. PMID 21304694 DOI: 10.4056/Sigs.1082860  0.08
2010 Göker M, Held B, Lapidus A, Nolan M, Spring S, Yasawong M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Goodwin L, Tapia R, Pitluck S, Liolios K, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1). Standards in Genomic Sciences. 3: 66-75. PMID 21304693 DOI: 10.4056/Sigs.1072907  0.08
2010 Sikorski J, Lapidus A, Chertkov O, Lucas S, Copeland A, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Han C, Brambilla E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288). Standards in Genomic Sciences. 3: 57-65. PMID 21304692 DOI: 10.4056/Sigs.1062906  0.12
2010 Labutti K, Sikorski J, Schneider S, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, ... ... Eisen JA, et al. Complete genome sequence of Planctomyces limnophilus type strain (Mü 290). Standards in Genomic Sciences. 3: 47-56. PMID 21304691 DOI: 10.4056/Sigs.1052813  0.12
2010 Sikorski J, Tindall BJ, Lowry S, Lucas S, Nolan M, Copeland A, Glavina Del Rio T, Tice H, Cheng JF, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Meiothermus silvanus type strain (VI-R2). Standards in Genomic Sciences. 3: 37-46. PMID 21304690 DOI: 10.4056/Sigs.1042812  0.01
2010 Tindall BJ, Sikorski J, Lucas S, Goltsman E, Copeland A, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, ... ... Eisen JA, et al. Complete genome sequence of Meiothermus ruber type strain (21). Standards in Genomic Sciences. 3: 26-36. PMID 21304689 DOI: 10.4056/Sigs.1032748  0.04
2010 Abt B, Foster B, Lapidus A, Clum A, Sun H, Pukall R, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Cheng JF, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Cellulomonas flavigena type strain (134). Standards in Genomic Sciences. 3: 15-25. PMID 21304688 DOI: 10.4056/Sigs.1012662  0.04
2010 Chang YJ, Pukall R, Saunders E, Lapidus A, Copeland A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Acidaminococcus fermentans type strain (VR4). Standards in Genomic Sciences. 3: 1-14. PMID 21304687 DOI: 10.4056/Sigs.1002553  0.04
2010 Saunders E, Tindall BJ, Fähnrich R, Lapidus A, Copeland A, Del Rio TG, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Chain P, ... ... Eisen JA, et al. Complete genome sequence of Haloterrigena turkmenica type strain (4k). Standards in Genomic Sciences. 2: 107-16. PMID 21304683 DOI: 10.4056/Sigs.681272  0.2
2010 Ivanova N, Daum C, Lang E, Abt B, Kopitz M, Saunders E, Lapidus A, Lucas S, Glavina Del Rio T, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Haliangium ochraceum type strain (SMP-2). Standards in Genomic Sciences. 2: 96-106. PMID 21304682 DOI: 10.4056/Sigs.69.1277  0.04
2010 Glavina Del Rio T, Abt B, Spring S, Lapidus A, Nolan M, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034). Standards in Genomic Sciences. 2: 87-95. PMID 21304681 DOI: 10.4056/Sigs.661199  0.04
2010 Gronow S, Welnitz S, Lapidus A, Nolan M, Ivanova N, Glavina Del Rio T, Copeland A, Chen F, Tice H, Pitluck S, Cheng JF, Saunders E, Brettin T, Han C, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Veillonella parvula type strain (Te3). Standards in Genomic Sciences. 2: 57-65. PMID 21304678 DOI: 10.4056/Sigs.521107  0.04
2010 Pati A, Labutti K, Pukall R, Nolan M, Glavina Del Rio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Mikhailova N, Pitluck S, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022). Standards in Genomic Sciences. 2: 49-56. PMID 21304677 DOI: 10.4056/Sigs.601105  0.16
2010 Spring S, Nolan M, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Land M, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)). Standards in Genomic Sciences. 2: 38-48. PMID 21304676 DOI: 10.4056/Sigs.581048  0.12
2010 Nolan M, Sikorski J, Jando M, Lucas S, Lapidus A, Glavina Del Rio T, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Sims D, Meincke L, Brettin T, Han C, ... ... Eisen JA, et al. Complete genome sequence of Streptosporangium roseum type strain (NI 9100). Standards in Genomic Sciences. 2: 29-37. PMID 21304675 DOI: 10.4056/Sigs.631049  0.04
2010 Ivanova N, Sikorski J, Jando M, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Copeland A, Cheng JF, Chen F, Bruce D, Goodwin L, Pitluck S, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Gordonia bronchialis type strain (3410). Standards in Genomic Sciences. 2: 19-28. PMID 21304674 DOI: 10.4056/Sigs.611106  0.12
2010 Mavromatis K, Sikorski J, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Ovchinnikova G, ... ... Eisen JA, et al. Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA). Standards in Genomic Sciences. 2: 9-18. PMID 21304673 DOI: 10.4056/Sigs.591104  0.12
2010 Foster B, Pukall R, Abt B, Nolan M, Glavina Del Rio T, Chen F, Lucas S, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07). Standards in Genomic Sciences. 2: 1-8. PMID 21304672 DOI: 10.4056/Sigs.571102  0.16
2010 Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Chen F, Nolan M, Saunders E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments. Archaea (Vancouver, B.C.). 2010: 690737. PMID 21234345 DOI: 10.1155/2010/690737  0.01
2010 Hartman AL, Riddle S, McPhillips T, Ludäscher B, Eisen JA. Introducing W.A.T.E.R.S.: a workflow for the alignment, taxonomy, and ecology of ribosomal sequences. Bmc Bioinformatics. 11: 317. PMID 20540779 DOI: 10.1186/1471-2105-11-317  0.08
2010 Tu Q, Eisen J, Chang C. Surface-enhanced Raman spectroscopy study of indolic molecules adsorbed on gold colloids. Journal of Biomedical Optics. 15: 020512. PMID 20459221 DOI: 10.1117/1.3400660  0.76
2010 Morgan JL, Darling AE, Eisen JA. Metagenomic sequencing of an in vitro-simulated microbial community. Plos One. 5: e10209. PMID 20419134 DOI: 10.1371/Journal.Pone.0010209  0.01
2010 Langille MG, Eisen JA. BioTorrents: a file sharing service for scientific data. Plos One. 5: e10071. PMID 20418944 DOI: 10.1371/Journal.Pone.0010071  0.01
2010 Hartman AL, Norais C, Badger JH, Delmas S, Haldenby S, Madupu R, Robinson J, Khouri H, Ren Q, Lowe TM, Maupin-Furlow J, Pohlschroder M, Daniels C, Pfeiffer F, Allers T, ... Eisen JA, et al. The complete genome sequence of Haloferax volcanii DS2, a model archaeon. Plos One. 5: e9605. PMID 20333302 DOI: 10.1371/Journal.Pone.0009605  0.04
2009 Clum A, Tindall BJ, Sikorski J, Ivanova N, Mavrommatis K, Lucas S, Glavina T, Del Rio, Nolan M, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, ... ... Eisen JA, et al. Complete genome sequence of Pirellula staleyi type strain (ATCC 27377). Standards in Genomic Sciences. 1: 308-16. PMID 21304671 DOI: 10.4056/Sigs.51657  0.16
2009 Nolan M, Gronow S, Lapidus A, Ivanova N, Copeland A, Lucas S, Del Rio TG, Chen F, Tice H, Pitluck S, Cheng JF, Sims D, Meincke L, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Streptobacillus moniliformis type strain (9901). Standards in Genomic Sciences. 1: 300-7. PMID 21304670 DOI: 10.4056/Sigs.48727  0.08
2009 Nolan M, Tindall BJ, Pomrenke H, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Han C, Bruce D, Goodwin L, Chain P, ... ... Eisen JA, et al. Complete genome sequence of Rhodothermus marinus type strain (R-10). Standards in Genomic Sciences. 1: 283-90. PMID 21304669 DOI: 10.4056/Sigs.46736  0.01
2009 Tindall BJ, Schneider S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Halomicrobium mukohataei type strain (arg-2). Standards in Genomic Sciences. 1: 270-7. PMID 21304667 DOI: 10.4056/Sigs.42644  0.04
2009 Pukall R, Gehrich-Schröter G, Lapidus A, Nolan M, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Copeland A, Saunders E, Brettin T, Detter JC, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134). Standards in Genomic Sciences. 1: 262-9. PMID 21304666 DOI: 10.4056/Sigs.41646  0.08
2009 Chovatia M, Sikorski J, Schröder M, Lapidus A, Nolan M, Tice H, Glavina Del Rio T, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, ... ... Eisen JA, et al. Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883). Standards in Genomic Sciences. 1: 254-61. PMID 21304665 DOI: 10.4056/Sigs.40645  0.12
2009 Spring S, Lapidus A, Schröder M, Gleim D, Sims D, Meincke L, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575). Standards in Genomic Sciences. 1: 242-53. PMID 21304664 DOI: 10.4056/Sigs.39508  0.12
2009 Pukall R, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Kuske C, Brettin T, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1). Standards in Genomic Sciences. 1: 234-41. PMID 21304663 DOI: 10.4056/Sigs.37633  0.12
2009 Munk C, Lapidus A, Copeland A, Jando M, Mayilraj S, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21). Standards in Genomic Sciences. 1: 234-41. PMID 21304662 DOI: 10.4056/Sigs.47643  0.04
2009 Han C, Sikorski J, Lapidus A, Nolan M, Glavina Del Rio T, Tice H, Cheng JF, Lucas S, Chen F, Copeland A, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Kangiella koreensis type strain (SW-125). Standards in Genomic Sciences. 1: 226-33. PMID 21304661 DOI: 10.4056/Sigs.36635  0.04
2009 Anderson I, Tindall BJ, Pomrenke H, Göker M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Chen F, Tice H, Cheng JF, Lucas S, Chertkov O, Bruce D, Brettin T, ... ... Eisen JA, et al. Complete genome sequence of Halorhabdus utahensis type strain (AX-2). Standards in Genomic Sciences. 1: 218-25. PMID 21304660 DOI: 10.4056/Sigs.31864  0.12
2009 Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio TG, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Atopobium parvulum type strain (IPP 1246). Standards in Genomic Sciences. 1: 166-73. PMID 21304653 DOI: 10.4056/Sigs.29547  0.16
2009 Labutti K, Pukall R, Steenblock K, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Anaerococcus prevotii type strain (PC1). Standards in Genomic Sciences. 1: 159-65. PMID 21304652 DOI: 10.4056/Sigs.24194  0.2
2009 Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, ... ... Eisen JA, et al. Complete genome sequence of Halogeometricum borinquense type strain (PR3). Standards in Genomic Sciences. 1: 150-9. PMID 21304651 DOI: 10.4056/Sigs.23264  0.08
2009 Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Saccharomonospora viridis type strain (P101). Standards in Genomic Sciences. 1: 141-9. PMID 21304650 DOI: 10.4056/Sigs.20263  0.08
2009 Lang E, Lapidus A, Chertkov O, Brettin T, Detter JC, Han C, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Land M, Hauser L, ... ... Eisen JA, et al. Complete genome sequence of Dyadobacter fermentans type strain (NS114). Standards in Genomic Sciences. 1: 133-40. PMID 21304649 DOI: 10.4056/Sigs.19262  0.01
2009 Ivanova N, Gronow S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Brettin T, Detter JC, ... ... Eisen JA, et al. Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b). Standards in Genomic Sciences. 1: 126-32. PMID 21304648 DOI: 10.4056/Sigs.1854  0.04
2009 Copeland A, Lapidus A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Mikhailova N, Pati A, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Catenulispora acidiphila type strain (ID 139908). Standards in Genomic Sciences. 1: 119-25. PMID 21304647 DOI: 10.4056/Sigs.17259  0.04
2009 Ivanova N, Sikorski J, Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, ... ... Eisen JA, et al. Complete genome sequence of Sanguibacter keddieii type strain (ST-74). Standards in Genomic Sciences. 1: 110-8. PMID 21304646 DOI: 10.4056/Sigs.16197  0.08
2009 Mavrommatis K, Gronow S, Saunders E, Land M, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). Standards in Genomic Sciences. 1: 101-9. PMID 21304645 DOI: 10.4056/Sigs.15195  0.08
2009 Mavrommatis K, Pukall R, Rohde C, Chen F, Sims D, Brettin T, Kuske C, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Tice H, ... ... Eisen JA, et al. Complete genome sequence of Cryptobacterium curtum type strain (12-3). Standards in Genomic Sciences. 1: 93-100. PMID 21304644 DOI: 10.4056/Sigs.12260  0.12
2009 Han C, Spring S, Lapidus A, Del Rio TG, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, ... ... Eisen JA, et al. Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). Standards in Genomic Sciences. 1: 54-62. PMID 21304637 DOI: 10.4056/Sigs.22138  0.08
2009 Land M, Lapidus A, Mayilraj S, Chen F, Copeland A, Del Rio TG, Nolan M, Lucas S, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Pitluck S, Rohde M, ... ... Eisen JA, et al. Complete genome sequence of Actinosynnema mirum type strain (101). Standards in Genomic Sciences. 1: 46-53. PMID 21304636 DOI: 10.4056/Sigs.21137  0.24
2009 Clum A, Nolan M, Lang E, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, Mikhailova N, ... ... Eisen JA, et al. Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP). Standards in Genomic Sciences. 1: 38-45. PMID 21304635 DOI: 10.4056/Sigs.1463  0.12
2009 Copeland A, Spring S, Göker M, Schneider S, Lapidus A, Del Rio TG, Tice H, Cheng JF, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavrommatis K, ... ... Eisen JA, et al. Complete genome sequence of Desulfomicrobium baculatum type strain (X). Standards in Genomic Sciences. 1: 29-37. PMID 21304634 DOI: 10.4056/Sigs.13134  0.2
2009 Land M, Pukall R, Abt B, Göker M, Rohde M, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). Standards in Genomic Sciences. 1: 21-8. PMID 21304633 DOI: 10.4056/Sigs.1162  0.12
2009 Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, ... ... Eisen JA, et al. Complete genome sequence of Kytococcus sedentarius type strain (541). Standards in Genomic Sciences. 1: 12-20. PMID 21304632 DOI: 10.4056/Sigs.761  0.16
2009 Lapidus A, Pukall R, Labuttii K, Copeland A, Del Rio TG, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Rohde M, Göker M, ... ... Eisen JA, et al. Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10). Standards in Genomic Sciences. 1: 3-11. PMID 21304631 DOI: 10.4056/Sigs.492  0.2
2009 Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, ... ... Eisen JA, et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature. 462: 1056-60. PMID 20033048 DOI: 10.1038/Nature08656  0.16
2009 Tallafuss A, Trepman A, Eisen JS. DeltaA mRNA and protein distribution in the zebrafish nervous system. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 238: 3226-36. PMID 19924821 DOI: 10.1002/dvdy.22136  1
2009 Eisen JA, MacCallum CJ. Genomics of emerging infectious disease: A PLoS collection. Plos Biology. 7: e1000224. PMID 19855830 DOI: 10.1371/Journal.Pbio.1000224  0.01
2009 Hartman AL, Lough DM, Barupal DK, Fiehn O, Fishbein T, Zasloff M, Eisen JA. Human gut microbiome adopts an alternative state following small bowel transplantation. Proceedings of the National Academy of Sciences of the United States of America. 106: 17187-92. PMID 19805153 DOI: 10.1073/Pnas.0904847106  0.12
2009 Yang JC, Madupu R, Durkin AS, Ekborg NA, Pedamallu CS, Hostetler JB, Radune D, Toms BS, Henrissat B, Coutinho PM, Schwarz S, Field L, Trindade-Silva AE, Soares CA, Elshahawi S, ... ... Eisen JA, et al. The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). Plos One. 4: e6085. PMID 19568419 DOI: 10.1371/Journal.Pone.0006085  0.08
2009 Woyke T, Xie G, Copeland A, González JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R. Assembling the marine metagenome, one cell at a time. Plos One. 4: e5299. PMID 19390573 DOI: 10.1371/Journal.Pone.0005299  0.2
2009 Campbell BJ, Smith JL, Hanson TE, Klotz MG, Stein LY, Lee CK, Wu D, Robinson JM, Khouri HM, Eisen JA, Cary SC. Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. Plos Genetics. 5: e1000362. PMID 19197347 DOI: 10.1371/Journal.Pgen.1000362  0.2
2009 Wu D, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA. Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. Plos One. 4: e4207. PMID 19148287 DOI: 10.1371/Journal.Pone.0004207  0.12
2008 Valdés J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R, Eisen JA, Holmes DS. Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications. Bmc Genomics. 9: 597. PMID 19077236 DOI: 10.1186/1471-2164-9-597  0.16
2008 Coyne RS, Thiagarajan M, Jones KM, Wortman JR, Tallon LJ, Haas BJ, Cassidy-Hanley DM, Wiley EA, Smith JJ, Collins K, Lee SR, Couvillion MT, Liu Y, Garg J, Pearlman RE, ... ... Eisen JA, et al. Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure. Bmc Genomics. 9: 562. PMID 19036158 DOI: 10.1186/1471-2164-9-562  0.16
2008 Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, ... ... Eisen JA, et al. A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biology. 9: R158. PMID 19000309 DOI: 10.1186/Gb-2008-9-11-R158  0.04
2008 Wu M, Eisen JA. A simple, fast, and accurate method of phylogenomic inference. Genome Biology. 9: R151. PMID 18851752 DOI: 10.1186/Gb-2008-9-10-R151  0.6
2008 Tallafuss A, Eisen JS. The Met receptor tyrosine kinase prevents zebrafish primary motoneurons from expressing an incorrect neurotransmitter. Neural Development. 3: 18. PMID 18664287 DOI: 10.1186/1749-8104-3-18  1
2008 Honjo Y, Kniss J, Eisen JS. Neuregulin-mediated ErbB3 signaling is required for formation of zebrafish dorsal root ganglion neurons. Development (Cambridge, England). 135: 2615-25. PMID 18599505 DOI: 10.1242/Dev.022178  0.01
2008 Wu D, Hartman A, Ward N, Eisen JA. An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). Plos One. 3: e2566. PMID 18596968 DOI: 10.1371/Journal.Pone.0002566  0.2
2008 Eisen JS, Smith JC. Controlling morpholino experiments: don't stop making antisense. Development (Cambridge, England). 135: 1735-43. PMID 18403413 DOI: 10.1242/Dev.001115  0.04
2008 Eisen JA. PLoS Biology 2.0. Plos Biology. 6: e48. PMID 18303952 DOI: 10.1371/Journal.Pbio.0060048  0.01
2008 Takayama S, Hostick U, Haendel M, Eisen J, Darimont B. An F-domain introduced by alternative splicing regulates activity of the zebrafish thyroid hormone receptor alpha. General and Comparative Endocrinology. 155: 176-89. PMID 17583703 DOI: 10.1016/J.Ygcen.2007.04.012  1
2007 Hazen TH, Wu D, Eisen JA, Sobecky PA. Sequence characterization and comparative analysis of three plasmids isolated from environmental Vibrio spp. Applied and Environmental Microbiology. 73: 7703-10. PMID 17921277 DOI: 10.1128/Aem.01577-07  0.12
2007 Bickel M, Eisen J, Stephan C, Crespi CM, Lutz T, Klauke S, Vogl TJ, Jacobi V, Yang OO, Staszewski S, Zangos S. A standardized, comprehensive magnetic resonance imaging protocol for rapid and precise quantification of HIV-1-associated lipodystrophy. Hiv Medicine. 8: 413-9. PMID 17760732 DOI: 10.1111/J.1468-1293.2007.00487.X  0.04
2007 Pfarr K, Foster J, Slatko B, Hoerauf A, Eisen JA. On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this species name include the intracellular bacteria of filarial nematodes? International Journal of Systematic and Evolutionary Microbiology. 57: 1677-8. PMID 17684235 DOI: 10.1099/Ijs.0.65248-0  0.01
2007 Maresca JA, Graham JE, Wu M, Eisen JA, Bryant DA. Identification of a fourth family of lycopene cyclases in photosynthetic bacteria. Proceedings of the National Academy of Sciences of the United States of America. 104: 11784-9. PMID 17606904 DOI: 10.1073/Pnas.0702984104  0.2
2007 Norais C, Hawkins M, Hartman AL, Eisen JA, Myllykallio H, Allers T. Genetic and physical mapping of DNA replication origins in Haloferax volcanii. Plos Genetics. 3: e77. PMID 17511521 DOI: 10.1371/Journal.Pgen.0030077  0.01
2007 Hutchinson SA, Cheesman SE, Hale LA, Boone JQ, Eisen JS. Nkx6 proteins specify one zebrafish primary motoneuron subtype by regulating late islet1 expression. Development (Cambridge, England). 134: 1671-7. PMID 17376808 DOI: 10.1242/Dev.02826  1
2007 Eisen JA. Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes. Plos Biology. 5: e82. PMID 17355177 DOI: 10.1371/Journal.Pbio.0050082  0.01
2007 Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA, Hoffman JM, Remington K, Beeson K, Tran B, Smith H, Baden-Tillson H, Stewart C, et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. Plos Biology. 5: e77. PMID 17355176 DOI: 10.1371/Journal.Pbio.0050077  0.12
2007 Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, et al. The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. Plos Biology. 5: e16. PMID 17355171 DOI: 10.1371/Journal.Pbio.0050016  0.04
2007 Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, Eisen JA, et al. The Calyptogena magnifica chemoautotrophic symbiont genome. Science (New York, N.Y.). 315: 998-1000. PMID 17303757 DOI: 10.1126/Science.1138438  0.08
2007 Kuhlman J, Eisen JS. Genetic screen for mutations affecting development and function of the enteric nervous system. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 236: 118-27. PMID 17131406 DOI: 10.1002/dvdy.21033  0.01
2007 Honjo Y, Eisen J. Neural crest migration and dorsal root ganglia formation in zebrafish erbB3 mutant Developmental Biology. 306: 369-370. DOI: 10.1016/J.Ydbio.2007.03.402  1
2007 Eisen J, Honjo Y. WITHDRAWN: Neural crest migration and dorsal root ganglia formation in zebrafish erbB3 mutant Developmental Biology. DOI: 10.1016/J.Ydbio.2007.03.397  1
2006 Goldman BS, Nierman WC, Kaiser D, Slater SC, Durkin AS, Eisen JA, Eisen J, Ronning CM, Barbazuk WB, Blanchard M, Field C, Halling C, Hinkle G, Iartchuk O, Kim HS, et al. Evolution of sensory complexity recorded in a myxobacterial genome. Proceedings of the National Academy of Sciences of the United States of America. 103: 15200-5. PMID 17015832 DOI: 10.1073/Pnas.0607335103  0.04
2006 Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, et al. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. Plos Biology. 4: e286. PMID 16933976 DOI: 10.1371/Journal.Pbio.0040286  0.12
2006 Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, et al. Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). Omics : a Journal of Integrative Biology. 10: 231-7. PMID 16901231 DOI: 10.1089/Omi.2006.10.231  0.01
2006 Hamilton EP, Dear PH, Rowland T, Saks K, Eisen JA, Orias E. Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome. Genomics. 88: 443-51. PMID 16782302 DOI: 10.1016/J.Ygeno.2006.05.002  0.04
2006 Hutchinson SA, Eisen JS. Islet1 and Islet2 have equivalent abilities to promote motoneuron formation and to specify motoneuron subtype identity. Development (Cambridge, England). 133: 2137-47. PMID 16672347 DOI: 10.1242/Dev.02355  1
2006 Hale LA, Tallafuss A, Yan YL, Dudley L, Eisen JS, Postlethwait JH. Characterization of the retinoic acid receptor genes raraa, rarab and rarg during zebrafish development. Gene Expression Patterns : Gep. 6: 546-55. PMID 16455309 DOI: 10.1016/J.Modgep.2005.10.007  1
2006 Tallafuss A, Hale LA, Yan YL, Dudley L, Eisen JS, Postlethwait JH. Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development. Gene Expression Patterns : Gep. 6: 556-65. PMID 16448862 DOI: 10.1016/J.Modgep.2005.10.005  1
2005 Honjo Y, Eisen JS. Slow muscle regulates the pattern of trunk neural crest migration in zebrafish. Development (Cambridge, England). 132: 4461-70. PMID 16162652 DOI: 10.1242/dev.02026  1
2005 Lewis KE, Bates J, Eisen JS. Regulation of iro3 expression in the zebrafish spinal cord. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 232: 140-8. PMID 15580554 DOI: 10.1002/dvdy.20215  1
2004 Cheesman SE, Eisen JS. gsh1 demarcates hypothalamus and intermediate spinal cord in zebrafish. Gene Expression Patterns : Gep. 5: 107-12. PMID 15533825 DOI: 10.1016/J.Modgep.2004.05.006  1
2004 Cheesman SE, Layden MJ, Von Ohlen T, Doe CQ, Eisen JS. Zebrafish and fly Nkx6 proteins have similar CNS expression patterns and regulate motoneuron formation. Development (Cambridge, England). 131: 5221-32. PMID 15456722 DOI: 10.1242/Dev.01397  1
2004 Lewis KE, Eisen JS. Paraxial mesoderm specifies zebrafish primary motoneuron subtype identity. Development (Cambridge, England). 131: 891-902. PMID 14757641 DOI: 10.1242/dev.00981  1
2004 Reyes R, Haendel M, Grant D, Melancon E, Eisen JS. Slow degeneration of zebrafish Rohon-Beard neurons during programmed cell death. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 229: 30-41. PMID 14699575 DOI: 10.1002/Dvdy.10488  1
2003 Appel B, Eisen JS. Retinoids run rampant: multiple roles during spinal cord and motor neuron development. Neuron. 40: 461-4. PMID 14642271 DOI: 10.1016/S0896-6273(03)00688-3  1
2003 Eisen J. Zebrafish as a model system. Perspective. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 228: 299-300. PMID 14579369 DOI: 10.1002/dvdy.10410  0.01
2003 Lewis KE, Eisen JS. From cells to circuits: development of the zebrafish spinal cord. Progress in Neurobiology. 69: 419-49. PMID 12880634  1
2002 Grunwald DJ, Eisen JS. Headwaters of the zebrafish -- emergence of a new model vertebrate. Nature Reviews. Genetics. 3: 717-24. PMID 12209146 DOI: 10.1038/nrg892  1
2002 Morin-Kensicki EM, Melancon E, Eisen JS. Segmental relationship between somites and vertebral column in zebrafish. Development (Cambridge, England). 129: 3851-60. PMID 12135923  1
2001 Varga ZM, Amores A, Lewis KE, Yan YL, Postlethwait JH, Eisen JS, Westerfield M. Zebrafish smoothened functions in ventral neural tube specification and axon tract formation. Development (Cambridge, England). 128: 3497-509. PMID 11566855  1
2001 Gray M, Moens CB, Amacher SL, Eisen JS, Beattie CE. Zebrafish deadly seven functions in neurogenesis. Developmental Biology. 237: 306-23. PMID 11543616 DOI: 10.1006/Dbio.2001.0381  1
2000 Beattie CE, Melancon E, Eisen JS. Mutations in the stumpy gene reveal intermediate targets for zebrafish motor axons. Development (Cambridge, England). 127: 2653-62. PMID 10821763  1
1999 Appel B, Fritz A, Westerfield M, Grunwald DJ, Eisen JS, Riley BB. Delta-mediated specification of midline cell fates in zebrafish embryos. Current Biology : Cb. 9: 247-56. PMID 10074451 DOI: 10.1016/S0960-9822(99)80113-4  1
1999 Beattie CE, Raible DW, Henion PD, Eisen JS. Early pressure screens. Methods in Cell Biology. 60: 71-86. PMID 9891331 DOI: 10.1016/S0091-679X(08)61894-4  1
1997 Bisgrove BW, Raible DW, Walter V, Eisen JS, Grunwald DJ. Expression of c-ret in the zebrafish embryo: potential roles in motoneuronal development. Journal of Neurobiology. 33: 749-68. PMID 9369149 DOI: 10.1002/(Sici)1097-4695(19971120)33:6<749::Aid-Neu4>3.0.Co;2-9  1
1997 Melançon E, Liu DW, Westerfield M, Eisen JS. Pathfinding by identified zebrafish motoneurons in the absence of muscle pioneers. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 17: 7796-804. PMID 9315900 DOI: 10.1523/Jneurosci.17-20-07796.1997  1
1997 Beattie CE, Hatta K, Halpern ME, Liu H, Eisen JS, Kimmel CB. Temporal separation in the specification of primary and secondary motoneurons in zebrafish. Developmental Biology. 187: 171-82. PMID 9242415 DOI: 10.1006/Dbio.1997.8604  1
1997 Beattie CE, Eisen JS. Notochord alters the permissiveness of myotome for pathfinding by an identified motoneuron in embryonic zebrafish. Development (Cambridge, England). 124: 713-20. PMID 9043086  1
1996 Devoto SH, Melançon E, Eisen JS, Westerfield M. Identification of separate slow and fast muscle precursor cells in vivo, prior to somite formation. Development (Cambridge, England). 122: 3371-80. PMID 8951054  1
1996 Henion PD, Raible DW, Beattie CE, Stoesser KL, Weston JA, Eisen JS. Screen for mutations affecting development of Zebrafish neural crest. Developmental Genetics. 18: 11-7. PMID 8742830 DOI: 10.1002/(Sici)1520-6408(1996)18:1<11::Aid-Dvg2>3.0.Co;2-4  1
1996 Raible DW, Eisen JS. Regulative interactions in zebrafish neural crest. Development (Cambridge, England). 122: 501-7. PMID 8625801  1
1995 Raible DW, Eisen JS. Lateral specification of cell fate during vertebrate development. Current Opinion in Genetics & Development. 5: 444-9. PMID 7580135 DOI: 10.1016/0959-437X(95)90047-K  1
1994 Postlethwait JH, Johnson SL, Midson CN, Talbot WS, Gates M, Ballinger EW, Africa D, Andrews R, Carl T, Eisen JS. A genetic linkage map for the zebrafish. Science (New York, N.Y.). 264: 699-703. PMID 8171321 DOI: 10.1126/Science.8171321  1
1994 Raible DW, Eisen JS. Restriction of neural crest cell fate in the trunk of the embryonic zebrafish. Development (Cambridge, England). 120: 495-503. PMID 8162850  1
1992 Raible DW, Wood A, Hodsdon W, Henion PD, Weston JA, Eisen JS. Segregation and early dispersal of neural crest cells in the embryonic zebrafish. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 195: 29-42. PMID 1292751 DOI: 10.1002/Aja.1001950104  1
1988 Westerfield M, Eisen JS. Neuromuscular specificity: pathfinding by identified motor growth cones in a vertebrate embryo. Trends in Neurosciences. 11: 18-22. PMID 2469149 DOI: 10.1016/0166-2236(88)90044-6  1
1986 Eisen JS, Myers PZ, Westerfield M. Pathway selection by growth cones of identified motoneurones in live zebra fish embryos. Nature. 320: 269-71. PMID 3960108 DOI: 10.1038/320269A0  1
1986 Myers PZ, Eisen JS, Westerfield M. Development and axonal outgrowth of identified motoneurons in the zebrafish. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 6: 2278-89. PMID 3746410 DOI: 10.1523/Jneurosci.06-08-02278.1986  1
1986 Westerfield M, McMurray JV, Eisen JS. Identified motoneurons and their innervation of axial muscles in the zebrafish. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 6: 2267-77. PMID 3746409 DOI: 10.1523/Jneurosci.06-08-02267.1986  1
1985 Westerfield M, Eisen JS. The growth of motor axons in the spinal cord of Xenopus embryos. Developmental Biology. 109: 96-101. PMID 2985458 DOI: 10.1016/0012-1606(85)90349-5  1
1984 Beltz B, Eisen JS, Flamm R, Harris-Warrick RM, Hooper SL, Marder E. Serotonergic innervation and modulation of the stomatogastric ganglion of three decapod crustaceans (Panulirus interruptus, Homarus americanus and Cancer irroratus). The Journal of Experimental Biology. 109: 35-54. PMID 6376680  1
1984 Eisen JS, Marder E. A mechanism for production of phase shifts in a pattern generator. Journal of Neurophysiology. 51: 1375-93. PMID 6145759  1
1984 Marder E, Eisen JS. Electrically coupled pacemaker neurons respond differently to same physiological inputs and neurotransmitters. Journal of Neurophysiology. 51: 1362-74. PMID 6145758  1
1984 Marder E, Eisen JS. Transmitter identification of pyloric neurons: electrically coupled neurons use different transmitters. Journal of Neurophysiology. 51: 1345-61. PMID 6145757  1
1982 Eisen JS, Marder E. Mechanisms underlying pattern generation in lobster stomatogastric ganglion as determined by selective inactivation of identified neurons. III. Synaptic connections of electrically coupled pyloric neurons. Journal of Neurophysiology. 48: 1392-1415. PMID 6296329 DOI: 10.1152/Jn.1982.48.6.1392  1
1981 Lingle C, Eisen JS, Marder E. Block of glutamatergic excitatory synaptic channels by chlorisondamine. Molecular Pharmacology. 19: 349-53. PMID 7231394  1
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