John O. Bishop - Related publications

University of Edinburgh University of Edinburgh, Edinburgh, Scotland, United Kingdom 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Martín L, Kamstra JH, Hurem S, Lindeman LC, Brede DA, Aanes H, Babiak I, Arenal A, Oughton D, Salbu B, Lyche JL, Aleström P. Altered non-coding RNA expression profile in F progeny 1 year after parental irradiation is linked to adverse effects in zebrafish. Scientific Reports. 11: 4142. PMID 33602989 DOI: 10.1038/s41598-021-83345-3   
2021 Zhou T, Wang W, Wang C, Sun C, Shi L, Chan SF. Insulin-like Androgenic Gland Hormone from the Shrimp Fenneropenaeus merguiensis: Expression, Gene organization and Transcript variants. Gene. 145529. PMID 33631246 DOI: 10.1016/j.gene.2021.145529   
2021 Zhou Y, Zhang X, Xiong S, Zeng X, Zhang X. Predicted gene 31453 (Gm31453) and the gene encoding carboxypeptidase A5 (Cpa5) are not essential for spermatogenesis and male fertility in the mouse. Reproduction, Fertility, and Development. PMID 33745502 DOI: 10.1071/RD20284   
2021 Husain M, Rasool KG, Tufail M, Alwaneen WS, Aldawood AS. RNAi-mediated silencing of vitellogenin gene curtails oogenesis in the almond moth Cadra cautella. Plos One. 16: e0245928. PMID 33571307 DOI: 10.1371/journal.pone.0245928   
2021 Qin Y, Li T, Zhao H, Mao Z, Ding C, Kang Y. Integrated Transcriptomic and Epigenetic Study of PCOS: Impact of and Promoter Methylation on Autophagy. Frontiers in Genetics. 12: 620241. PMID 33763111 DOI: 10.3389/fgene.2021.620241   
2021 Guo YF, Qiu JR, Chen T, Gao SJ, Su-Hong B, Wang R, Wang JD. Characterization and functional analysis of a β-adrenergic-like octopamine receptor from the oriental armyworm (Mythimna separata Walker). Archives of Insect Biochemistry and Physiology. e21772. PMID 33719088 DOI: 10.1002/arch.21772   
2021 Leme Silva AG, Nagai MH, Nakahara TS, Malnic B. Genetic Background Effects on the Expression of an Odorant Receptor Gene. Frontiers in Cellular Neuroscience. 15: 646413. PMID 33716678 DOI: 10.3389/fncel.2021.646413   
2021 Liu S, Punthambaker S, Iyer EPR, Ferrante T, Goodwin D, Fürth D, Pawlowski AC, Jindal K, Tam JM, Mifflin L, Alon S, Sinha A, Wassie AT, Chen F, Cheng A, et al. Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses. Nucleic Acids Research. PMID 33693773 DOI: 10.1093/nar/gkab120   
2021 Ding Q, Xu X, Wang X, Ullah F, Gao X, Song D. Characterization and functional analysis of two acetylcholinesterase genes in Bradysia odoriphaga Yang et Zhang (Diptera: Sciaridae). Pesticide Biochemistry and Physiology. 174: 104807. PMID 33838708 DOI: 10.1016/j.pestbp.2021.104807   
2021 Du H, Zaman S, Hu S, Che S. Single-Molecule Long-Read Sequencing of Purslane () and Differential Gene Expression Related with Biosynthesis of Unsaturated Fatty Acids. Plants (Basel, Switzerland). 10. PMID 33808162 DOI: 10.3390/plants10040655   
2021 Wang L, Han W, Diao S, Suo Y, Li H, Mai Y, Wang Y, Sun P, Fu J. Study of Sexual-Linked Genes ( and ) on the Performance of Androecious Persimmons ( Thunb.). Plants (Basel, Switzerland). 10. PMID 33670570 DOI: 10.3390/plants10020390   
2021 Wang P, Zhang X, Huo H, Wang S, Song X, Huo J. , a gene specifically expressed in the testis and seminal vesicle of the Banna mini-pig inbred line (BMI). Animal Reproduction. 17: e20200521. PMID 33791027 DOI: 10.1590/1984-3143-AR2020-0521   
2021 Chandra PK, Cikic S, Baddoo MC, Rutkai I, Guidry JJ, Flemington EK, Katakam PV, Busija DW. Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 271678X21999553. PMID 33715494 DOI: 10.1177/0271678X21999553   
2021 Mayère C, Neirijnck Y, Sararols P, Rands CM, Stévant I, Kühne F, Chassot AA, Chaboissier MC, Dermitzakis ET, Nef S. Single-cell transcriptomics reveal temporal dynamics of critical regulators of germ cell fate during mouse sex determination. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e21452. PMID 33749946 DOI: 10.1096/fj.202002420R   
2021 Keshavarz M, Tautz D. The imprinted lncRNA regulates sexual preference and the sex-specific brain transcriptome in mice. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33658376 DOI: 10.1073/pnas.2022172118   
2021 Mirghasemi N, Fanelli E, Jamali S, Sohani MM, De Luca F. Molecular Characterization of Three B-1,4-Endoglucanase Genes in and Functional Analysis of -2 Gene. Plants (Basel, Switzerland). 10. PMID 33802850 DOI: 10.3390/plants10030568   
2021 Mirghasemi N, Fanelli E, Jamali S, Sohani MM, De Luca F. Molecular Characterization of Three B-1,4-Endoglucanase Genes in and Functional Analysis of -2 Gene. Plants (Basel, Switzerland). 10. PMID 33802850 DOI: 10.3390/plants10030568   
2021 Wu B, Jiang X, Huang Y, Ying X, Zhang H, Liu B, Li Z, Qi D, Ji W, Cai X. Integrated Analysis of mRNA-mA-protein Profiles Reveals Novel Insights into the Mechanisms for Cadmium-induced Urothelial Transformation. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-23. PMID 33830842 DOI: 10.1080/1354750X.2021.1913513   
2021 Cano V, Martínez MT, Couselo JL, Varas E, Vieitez FJ, Corredoira E. Efficient Transformation of Somatic Embryos and Regeneration of Cork Oak Plantlets with A Gene () Encoding a Chestnut Thaumatin-Like Protein. International Journal of Molecular Sciences. 22. PMID 33578757 DOI: 10.3390/ijms22041757   
2021 Kilari S, Sharma A, Zhao C, Singh A, Cai C, Simeon M, van Wijnen AJ, Misra S. Identification of novel therapeutic targets for contrast induced acute kidney injury (CI-AKI): alpha blockers as a therapeutic strategy for CI-AKI. Translational Research : the Journal of Laboratory and Clinical Medicine. PMID 33711514 DOI: 10.1016/j.trsl.2021.03.005   
2021 Xu L, Li Z, Wang S. Development of a Virus-Based Reporter System for Functional Analysis of Plant rRNA Gene Promoter. Frontiers in Microbiology. 12: 637347. PMID 33679673 DOI: 10.3389/fmicb.2021.637347   
2021 Zhang HL, Xu Y, Ju JQ, Pan ZN, Liu JC, Sun SC. Increased Environment-Related Metabolism and Genetic Expression in the Matured Mouse Oocytes by Transcriptome Analysis. Frontiers in Cell and Developmental Biology. 9: 642010. PMID 33681227 DOI: 10.3389/fcell.2021.642010   
2021 Poklukar K, Čandek-Potokar M, Vrecl M, Batorek-Lukač N, Fazarinc G, Kress K, Stefanski V, Škrlep M. Adipose Tissue Gene Expression of Entire Male, Immunocastrated and Surgically Castrated Pigs. International Journal of Molecular Sciences. 22. PMID 33578947 DOI: 10.3390/ijms22041768   
2021 Jiang Y, An X, Li Z, Yan T, Zhu T, Xie K, Liu S, Hou Q, Zhao L, Wu S, Liu X, Zhang S, He W, Li F, Li J, et al. CRISPR/Cas9-based Discovery of Maize Transcription Factors Regulating Male Sterility and Their Functional Conservation in Plants. Plant Biotechnology Journal. PMID 33772993 DOI: 10.1111/pbi.13590   
2021 Kim D, Hong SH, Han G, Cho C. Analysis of mouse male germ cell-specific or -predominant Tex13 family genes encoding proteins with transcriptional repressor activity. Molecular Biology Reports. PMID 33811575 DOI: 10.1007/s11033-021-06265-5   
2021 Cai X, Huang Y, Chen H, Qi Q, Xu M, Xu P, Wu X. Identification and functional characterization of the transcription factor coding gene in large yellow croaker . Heliyon. 7: e06299. PMID 33718639 DOI: 10.1016/j.heliyon.2021.e06299   
2021 Wang N, Liu Y, Wang R, Chen S. The linkage of cell cycle and DNA replication with growth difference in female Chinese tongue sole (Cynoglossus semilaevis): Analysis from transcriptomic study and WGCNA. Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 39: 100833. PMID 33848768 DOI: 10.1016/j.cbd.2021.100833   
2021 Hansen J, von Melchner H, Wurst W. Mutant non-coding RNA resource in mouse embryonic stem cells. Disease Models & Mechanisms. 14. PMID 33729986 DOI: 10.1242/dmm.047803   
2021 Huang SK, Tripathi P, Koneva LA, Cavalcante RG, Craig N, Scruggs AM, Sartor MA, Deng F, Chen Y. Effect of concentration and duration of particulate matter exposure on the transcriptome and DNA methylome of bronchial epithelial cells. Environmental Epigenetics. 7: dvaa022. PMID 33692908 DOI: 10.1093/eep/dvaa022   
2021 Bereketoglu C, Nacar G, Sari T, Mertoglu B, Pradhan A. Transcriptomic analysis of nonylphenol effect on . Peerj. 9: e10794. PMID 33614281 DOI: 10.7717/peerj.10794   
2021 Mehta SJK, Joshi PA, Mishra RK. Molecular and Phenotypic Characterization Following RNAi Mediated Knockdown in . Bio-Protocol. 11: e3924. PMID 33732811 DOI: 10.21769/BioProtoc.3924   
2021 Jin XH, Zhang YF, Yuan YX, Han L, Zhang GP, Hu H. Isolation, characterization and transcriptome analysis of porcine deltacoronavirus strain HNZK-02 from Henan Province, China. Molecular Immunology. 134: 86-99. PMID 33740580 DOI: 10.1016/j.molimm.2021.03.006   
2021 Saintilnord WN, Tenlep SYN, Preston JD, Duregon E, DeRouchey JE, Unrine JM, de Cabo R, Pearson KJ, Fondufe-Mittendorf YN. Chronic Exposure to Cadmium Induces Differential Methylation in Mice Spermatozoa. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 33483743 DOI: 10.1093/toxsci/kfab002   
2021 Zhu H, Sun H, Yu D, Li T, Hai T, Liu C, Zhang Y, Chen Y, Dai X, Li Z, Li W, Liu R, Feng G, Zhou Q. Transcriptome and DNA Methylation Profiles of Mouse Fetus and Placenta Generated by Round Spermatid Injection. Frontiers in Cell and Developmental Biology. 9: 632183. PMID 33796527 DOI: 10.3389/fcell.2021.632183   
2021 Xiao C, Deng J, Zeng L, Sun T, Yang Z, Yang X. Transcriptome Analysis Identifies Candidate Genes and Signaling Pathways Associated With Feed Efficiency in Xiayan Chicken. Frontiers in Genetics. 12: 607719. PMID 33815460 DOI: 10.3389/fgene.2021.607719   
2021 Li J, Li N, Zhu L, Zhang Z, Li X, Wang J, Xun H, Zhao J, Wang X, Wang T, Wang H, Liu B, Li Y, Gong L. Mutation of a major CG methylase alters genome-wide lncRNA expression in rice. G3 (Bethesda, Md.). PMID 33617633 DOI: 10.1093/g3journal/jkab049   
2021 He W, Gong S, Wang X, Dong X, Cheng H. DNA methylation integratedly modulates the expression of Pit-Oct-Unt transcription factors in esophageal squamous cell carcinoma. Journal of Cancer. 12: 1634-1643. PMID 33613750 DOI: 10.7150/jca.49231   
2021 Martin SK, Tomida J, Wood RD. Disruption of DNA polymerase ζ engages an innate immune response. Cell Reports. 34: 108775. PMID 33626348 DOI: 10.1016/j.celrep.2021.108775   
2021 Andrade A, Hernández-Eligio A, Tirado AL, Vega-Alvarado L, Olvera M, Morett E, Juárez K. Specialization of the Reiterated Copies of the Heterodimeric Integration Host Factor Genes in . Frontiers in Microbiology. 12: 626443. PMID 33737919 DOI: 10.3389/fmicb.2021.626443   
2021 Fetke JK, Martinson JW, Flick RW, Huang W, Bencic DC, See MJ, Pilgrim EM, Debry RW, Biales AD. DNA methylation and expression of estrogen receptor alpha in fathead minnows exposed to 17α-ethynylestradiol. Aquatic Toxicology (Amsterdam, Netherlands). 233: 105788. PMID 33662878 DOI: 10.1016/j.aquatox.2021.105788   
2021 Emrich-Mills TZ, Yates G, Barrett J, Girr P, Grouneva I, Lau CS, Walker CE, Kwok TK, Davey JW, Johnson MP, Mackinder LCM. A recombineering pipeline to clone large and complex genes in Chlamydomonas. The Plant Cell. PMID 33723601 DOI: 10.1093/plcell/koab024   
2021 He K, Zhang J, Liu J, Cui Y, Liu LG, Ye S, Ban Q, Pan R, Liu D. Functional genomics study of protein inhibitor of activated STAT1 in mouse hippocampal neuronal cells revealed by RNA sequencing. Aging. 13. PMID 33759814 DOI: 10.18632/aging.202749   
2021 Patole S, Rout M, Mohapatra H. Identification and validation of reference genes for reliable analysis of differential gene expression during antibiotic induced persister formation in Klebsiella pneumoniae using qPCR. Journal of Microbiological Methods. 182: 106165. PMID 33581167 DOI: 10.1016/j.mimet.2021.106165   
2021 Yeo GHT, Juez O, Chen Q, Banerjee B, Chu L, Shen MW, Sabry M, Logister I, Sherwood RI, Gifford DK. Detection of gene cis-regulatory element perturbations in single-cell transcriptomes. Plos Computational Biology. 17: e1008789. PMID 33711017 DOI: 10.1371/journal.pcbi.1008789   
2021 Yeo GHT, Juez O, Chen Q, Banerjee B, Chu L, Shen MW, Sabry M, Logister I, Sherwood RI, Gifford DK. Detection of gene cis-regulatory element perturbations in single-cell transcriptomes. Plos Computational Biology. 17: e1008789. PMID 33711017 DOI: 10.1371/journal.pcbi.1008789   
2021 Chowdhury F, Wang L, Al-Raqad M, Amor DJ, Baxová A, Bendová Š, Biamino E, Brusco A, Caluseriu O, Cox NJ, Froukh T, Gunay-Aygun M, Hančárová M, Haynes D, Heide S, et al. Haploinsufficiency of PRR12 causes a spectrum of neurodevelopmental, eye, and multisystem abnormalities. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 33824499 DOI: 10.1038/s41436-021-01129-6   
2021 James K, van Sinderen D. Site-Directed Mutagenesis of Bifidobacterium Strains. Methods in Molecular Biology (Clifton, N.J.). 2278: 45-60. PMID 33649947 DOI: 10.1007/978-1-0716-1274-3_5   
2021 Li S, Cao P, Wang C, Guo J, Zang Y, Wu K, Ran F, Liu L, Wang D, Min Y. Genome-Wide Analysis of Tubulin Gene Family in Cassava and Expression of Family Member during Various Stress. Plants (Basel, Switzerland). 10. PMID 33807152 DOI: 10.3390/plants10040668   
2021 Gajos M, Jasnovidova O, van Bömmel A, Freier S, Vingron M, Mayer A. Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Research. PMID 33788942 DOI: 10.1093/nar/gkab208   
2021 Bold IT, Specht AK, Droste CF, Zielinski A, Meyer F, Clauditz TS, Münscher A, Werner S, Rothkamm K, Petersen C, Borgmann K. DNA Damage Response during Replication Correlates with CIN70 Score and Determines Survival in HNSCC Patients. Cancers. 13. PMID 33801877 DOI: 10.3390/cancers13061194