Sheldon Penman, Ph.D. - Related publications

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
Website:
http://www.nasonline.org/member-directory/members/40333.html
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Burgenson D, Linton J, Ge X, Kostov Y, Tolosa L, Szeto GL, Rao G. A Cell-Free Protein Expression System Derived from Human Primary Peripheral Blood Mononuclear Cells. Acs Synthetic Biology. PMID 32698572 DOI: 10.1021/acssynbio.0c00256   
2020 Zhang Y, Sohn C, Lee S, Ahn H, Seo J, Cao J, Cai L. Detecting protein and post-translational modifications in single cells with iDentification and qUantification sEparaTion (DUET). Communications Biology. 3: 420. PMID 32747637 DOI: 10.1038/s42003-020-01132-8   
2020 Reichmuth AM, Zimmermann M, Wilhelm F, Frutiger A, Blickenstorfer Y, Fattinger C, Waldhoer M, Vörös J. Quantification of Molecular Interactions in Living Cells in Real Time using a Membrane Protein Nanopattern. Analytical Chemistry. PMID 32524822 DOI: 10.1021/acs.analchem.0c00987   
2020 Bäckström A, Kugel L, Gnann C, Xu H, Aslan JE, Lundberg E, Stadler C. A Sample Preparation Protocol for High Throughput Immunofluorescence of Suspension Cells on an Adherent Surface. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 22155420935403. PMID 32564662 DOI: 10.1369/0022155420935403   
2020 Krol E, Yau HCL, Lechner M, Schäper S, Bange G, Vollmer W, Becker A. Tol-Pal System and Rgs Proteins Interact to Promote Unipolar Growth and Cell Division in Sinorhizobium meliloti. Mbio. 11. PMID 32605980 DOI: 10.1128/mBio.00306-20   
2020 Trzupek D, Dunstan M, Cutler AJ, Lee M, Godfrey L, Jarvis L, Rainbow DB, Aschenbrenner D, Jones JL, Uhlig HH, Wicker LS, Todd JA, Ferreira RC. Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis. Genome Medicine. 12: 55. PMID 32580776 DOI: 10.1186/s13073-020-00756-z   
2020 Sarnik SA, Sutermaster BA, Darling EM. Mass-Added Density Modulation for Sorting Cells Based on Differential Surface Protein Levels. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 32687243 DOI: 10.1002/cyto.a.24192   
2020 Wollman AJM, Muchová K, Chromiková Z, Wilkinson AJ, Barák I, Leake MC. Single-molecule optical microscopy of protein dynamics and computational analysis of images to determine cell structure development in differentiating . Computational and Structural Biotechnology Journal. 18: 1474-1486. PMID 32637045 DOI: 10.1016/j.csbj.2020.06.005   
2020 Wolf T, Jin W, Zoppi G, Vogel IA, Akhmedov M, Bleck CKE, Beltraminelli T, Rieckmann JC, Ramirez NJ, Benevento M, Notarbartolo S, Bumann D, Meissner F, Grimbacher B, Mann M, et al. Dynamics in protein translation sustaining T cell preparedness. Nature Immunology. 21: 927-937. PMID 32632289 DOI: 10.1038/s41590-020-0714-5   
2020 Chu AL, Schilling JD, King KR, Feldstein AE. The Power of Single Cell Analysis for the Study of Liver Pathobiology. Hepatology (Baltimore, Md.). PMID 32740968 DOI: 10.1002/hep.31485   
2020 Eastman AE, Chen X, Hu X, Hartman AA, Pearlman Morales AM, Yang C, Lu J, Kueh HY, Guo S. Resolving Cell Cycle Speed in One Snapshot with a Live-Cell Fluorescent Reporter. Cell Reports. 31: 107804. PMID 32579930 DOI: 10.1016/j.celrep.2020.107804   
2020 Ma D, Li S, Nie X, Chen L, Chen N, Hou D, Liu X, Gao B. RNAi-mediated IARS2 knockdown inhibits proliferation and promotes apoptosis in human melanoma A375 cells. Oncology Letters. 20: 1093-1100. PMID 32724348 DOI: 10.3892/ol.2020.11688   
2020 Weinguny M, Eisenhut P, Klanert G, Virgolini N, Marx N, Jonsson A, Ivansson D, Lövgren A, Borth N. Random epigenetic modulation of CHO cells by repeated knock-down of DNA-methyltransferases increases population diversity and enables sorting of cells with higher production capacities. Biotechnology and Bioengineering. PMID 32662873 DOI: 10.1002/bit.27493   
2020 Fernandes Póvoa EE, Ebbing ALP, Betist MC, van der Veen C, Korswagen HC. An optimized dissociation protocol for FACS-based isolation of rare cell types from L1 larvae. Methodsx. 7: 100922. PMID 32509539 DOI: 10.1016/j.mex.2020.100922   
2020 Bastida-Ruiz D, Wuillemin C, Pederencino A, Yaron M, Martinez de Tejada B, Pizzo SV, Cohen M. Activated α-macroglobulin binding to cell surface GRP78 induces trophoblastic cell fusion. Scientific Reports. 10: 9666. PMID 32541810 DOI: 10.1038/s41598-020-66554-0   
2020 Weinguny M, Klanert G, Eisenhut P, Jonsson A, Ivansson D, Lövgren A, Borth N. Directed evolution approach to enhance efficiency and speed of outgrowth during single cell subcloning of Chinese Hamster Ovary cells. Computational and Structural Biotechnology Journal. 18: 1320-1329. PMID 32612755 DOI: 10.1016/j.csbj.2020.05.020   
2020 Stossi F, Mistry RM, Singh PK, Johnson HL, Mancini MG, Szafran AT, Mancini MA. Single-Cell Distribution Analysis of AR Levels by High-Throughput Microscopy in Cell Models: Application for Testing Endocrine-Disrupting Chemicals. Slas Discovery : Advancing Life Sciences R & D. 2472555220934420. PMID 32552291 DOI: 10.1177/2472555220934420   
2020 Zhang P, Yang J, Cho E, Lu Y. Bringing light into cell-free expression. Acs Synthetic Biology. PMID 32603590 DOI: 10.1021/acssynbio.0c00211   
2020 Buen Abad Najar CF, Yosef N, Lareau LF. Coverage-dependent bias creates the appearance of binary splicing in single cells. Elife. 9. PMID 32597758 DOI: 10.7554/eLife.54603   
2020 Rudzka DA, Mason S, Neilson M, McGarry L, Kalna G, Hedley A, Blyth K, Olson MF. Selection of established tumour cells through narrow diameter micropores enriches for elevated Ras/Raf/MEK/ERK MAPK signalling and enhanced tumour growth. Small Gtpases. 1-17. PMID 32569510 DOI: 10.1080/21541248.2020.1780108   
2020 Teves JM, Won KJ. Mapping Cellular Coordinates through Advances in Spatial Transcriptomics Technology. Molecules and Cells. PMID 32507771 DOI: 10.14348/molcells.2020.0020   
2020 Salinas-Saavedra M, Martindale MQ. Par protein localization during the early development of suggests different modes of epithelial organization in the Metazoa. Elife. 9. PMID 32716297 DOI: 10.7554/eLife.54927   
2020 Liu Y, Hu J, Liu D, Zhou S, Liao J, Liao G, Yang S, Guo Z, Li Y, Li S, Chen H, Guo Y, Li M, Fan L, Li L, et al. Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection. Theranostics. 10: 8851-8862. PMID 32754283 DOI: 10.7150/thno.48201   
2020 Yanakieva D, Elter A, Bratsch J, Friedrich K, Becker S, Kolmar H. FACS-Based Functional Protein Screening via Microfluidic Co-encapsulation of Yeast Secretor and Mammalian Reporter Cells. Scientific Reports. 10: 10182. PMID 32576855 DOI: 10.1038/s41598-020-66927-5   
2020 Karuna A, Masia F, Chappell S, Errington R, Hartley AM, Jones DD, Borri P, Langbein W. Quantitative Imaging of B1 Cyclin Expression Across the Cell Cycle Using Green Fluorescent Protein Tagging and Epifluorescence. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 32613720 DOI: 10.1002/cyto.a.24038   
2020 Choi JH, In Kim H, Woo HG. scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data. Bmc Bioinformatics. 21: 342. PMID 32753029 DOI: 10.1186/s12859-020-03700-5   
2020 Kim SM, Vetrivel P, Ha SE, Kim HH, Kim JA, Kim GS. Apigetrin induces extrinsic apoptosis, autophagy and G2/M phase cell cycle arrest through PI3K/AKT/mTOR pathway in AGS human gastric cancer cell. The Journal of Nutritional Biochemistry. 83: 108427. PMID 32559585 DOI: 10.1016/j.jnutbio.2020.108427   
2020 Su M, Lin Y, Cui C, Tian X, Lai L. ERMAP is a B7 family-related molecule that negatively regulates T cell and macrophage responses. Cellular & Molecular Immunology. PMID 32620788 DOI: 10.1038/s41423-020-0494-8   
2020 Rai P, Sengupta D, Majumdar A. SelfE: Gene Selection via Self-Expression for Single-Cell Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32750851 DOI: 10.1109/TCBB.2020.2997326   
2020 Tabatabaei N, Hou S, Kim KW, Tahmasebi S. Signaling pathways that control mRNA translation initiation in macrophages. Cellular Signalling. 73: 109700. PMID 32593651 DOI: 10.1016/j.cellsig.2020.109700   
2020 Williams SM, Liyu AV, Tsai CF, Moore RJ, Orton DJ, Chrisler WB, Gaffrey MJ, Liu T, Smith RD, Kelly RT, Paša-Tolić L, Zhu Y. Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography-Mass Spectrometry for High-Throughput Single-Cell Proteomics. Analytical Chemistry. PMID 32639140 DOI: 10.1021/acs.analchem.0c01551   
2020 Wang Y, Yu R, Wu L, Yang G. Hydrogen sulfide signaling in regulation of cell behaviors. Nitric Oxide : Biology and Chemistry. PMID 32682981 DOI: 10.1016/j.niox.2020.07.002   
2020 Natan S, Koren Y, Shelah O, Goren S, Lesman A. Long-range mechanical coupling of cells in 3D fibrin gels. Molecular Biology of the Cell. 31: 1474-1485. PMID 32374653 DOI: 10.1091/mbc.E20-01-0079   
2020 Yu SM, Li B, Granick S, Cho YK. Mechanical Adaptations of Epithelial Cells on Various Protruded Convex Geometries. Cells. 9. PMID 32527037 DOI: 10.3390/cells9061434   
2020 Chitirala P, Chang HF, Martzloff P, Harenberg C, Ravichandran K, Abdulreda MH, Berggren PO, Krause E, Schirra C, Leinders-Zufall T, Benseler F, Brose N, Rettig J. Studying the biology of cytotoxic T lymphocytes in vivo with a fluorescent granzyme B-mTFP knock-in mouse. Elife. 9. PMID 32696761 DOI: 10.7554/eLife.58065   
2020 Tutucci E, Singer RH. Simultaneous Detection of mRNA and Protein in S. cerevisiae by Single-Molecule FISH and Immunofluorescence. Methods in Molecular Biology (Clifton, N.J.). 2166: 51-69. PMID 32710403 DOI: 10.1007/978-1-0716-0712-1_4   
2020 Dong K, Zhang S. Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data. Briefings in Bioinformatics. PMID 32578841 DOI: 10.1093/bib/bbaa120   
2020 Yeh CF, Lin CH, Chang HC, Tang CY, Lai PT, Hsu CH. A Microfluidic Single-Cell Cloning (SCC) Device for the Generation of Monoclonal Cells. Cells. 9. PMID 32570745 DOI: 10.3390/cells9061482   
2020 McQueen BE, Kiatthanapaiboon A, Fulcher ML, Lam M, Patton K, Powell E, Kollipara A, Madden V, Suchland RJ, Wyrick P, O'Connell CM, Reidel B, Kesimer M, Randell SH, Darville T, et al. A Human Fallopian Tube Epithelial Cell Culture Model to Study Host Responses to Infection. Infection and Immunity. PMID 32601108 DOI: 10.1128/IAI.00105-20   
2020 Liu WK, Xu D, Xu Y, Qiu SY, Zhang L, Wu HK, Zhou R. Protein profile of well-differentiated versus un-differentiated human bronchial/tracheal epithelial cells. Heliyon. 6: e04243. PMID 32613119 DOI: 10.1016/j.heliyon.2020.e04243   
2020 Moraes GS, Wink MR, Klamt F, Silva AO, da Cruz Fernandes M. Simplified low-cost methodology to establish, histologically process and analyze three-dimensional cancer cell spheroid arrays. European Journal of Cell Biology. 99: 151095. PMID 32646644 DOI: 10.1016/j.ejcb.2020.151095   
2020 Labib M, Wang Z, Ahmed SU, Mohamadi RM, Duong B, Green B, Sargent EH, Kelley SO. Tracking the expression of therapeutic protein targets in rare cells by antibody-mediated nanoparticle labelling and magnetic sorting. Nature Biomedical Engineering. PMID 32719513 DOI: 10.1038/s41551-020-0590-1   
2020 Perez-Carrasco R, Beentjes C, Grima R. Effects of cell cycle variability on lineage and population measurements of messenger RNA abundance. Journal of the Royal Society, Interface. 17: 20200360. PMID 32634365 DOI: 10.1098/rsif.2020.0360   
2020 Guo Q, Zhao P, Zhang Z, Zhang J, Zhang Z, Hua Y, Han B, Li N, Zhao X, Hou L. TIM-3 blockade combined with bispecific antibody MT110 enhances the anti-tumor effect of γδ T cells. Cancer Immunology, Immunotherapy : Cii. PMID 32588076 DOI: 10.1007/s00262-020-02638-0   
2020 Ansa-Addo EA, Huang HC, Riesenberg B, Iamsawat S, Borucki D, Nelson MH, Nam JH, Chung D, Paulos CM, Liu B, Yu XZ, Philpott C, Howe PH, Li Z. RNA binding protein PCBP1 is an intracellular immune checkpoint for shaping T cell responses in cancer immunity. Science Advances. 6: eaaz3865. PMID 32523987 DOI: 10.1126/sciadv.aaz3865   
2020 Willis C, Nyffeler J, Harrill J. Phenotypic Profiling of Reference Chemicals across Biologically Diverse Cell Types Using the Cell Painting Assay. Slas Discovery : Advancing Life Sciences R & D. 2472555220928004. PMID 32546035 DOI: 10.1177/2472555220928004   
2020 Zingue S, Maxeiner S, Rutz J, Ndinteh DT, Chun FK, Fohouo FT, Njamen D, Blaheta RA. Ethanol-extracted Cameroonian propolis: Antiproliferative effects and potential mechanism of action in prostate cancer. Andrologia. e13698. PMID 32573810 DOI: 10.1111/and.13698   
2020 Wight EM, Ide AD, Damer CK. Copine A regulates the size and exocytosis of contractile vacuoles and postlysosomes in Dictyostelium. Febs Open Bio. 10: 979-994. PMID 32351039 DOI: 10.1002/2211-5463.12874   
2020 Sharma P, Lam VK, Raub CB, Chung BM. Tracking Single Cells Motility on Different Substrates. Methods and Protocols. 3. PMID 32759734 DOI: 10.3390/mps3030056   
2020 Zhang B, Zhang T, Zhang TY, Wang N, He S, Wu B, Jin HX. A Novel Methoxybenzyl 5-Nitroacridone Derivative Effectively Triggers G1 Cell Cycle Arrest in Chronic Myelogenous Leukemia K562 Cells by Inhibiting CDK4/6-Mediated Phosphorylation of Rb. International Journal of Molecular Sciences. 21. PMID 32708403 DOI: 10.3390/ijms21145077