Logan S. Ahlstrom, Ph.D. - Publications

Affiliations: 
2012 Chemistry University of Arizona, Tucson, AZ 
Area:
General Biophysics, Biochemistry

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Salmon L, Ahlstrom LS, Bardwell JCA, Horowitz S. Selecting Conformational Ensembles Using Residual Electron and Anomalous Density (READ). Methods in Molecular Biology (Clifton, N.J.). 1764: 491-504. PMID 29605935 DOI: 10.1007/978-1-4939-7759-8_31  0.404
2017 Ahlstrom LS, Vorontsov II, Shi J, Miyashita O. Effect of the Crystal Environment on Side-Chain Conformational Dynamics in Cyanovirin-N Investigated through Crystal and Solution Molecular Dynamics Simulations. Plos One. 12: e0170337. PMID 28107510 DOI: 10.1371/Journal.Pone.0170337  0.713
2016 Salmon L, Ahlstrom LS, Horowitz S, Dickson A, Brooks CL, Bardwell JC. Capturing a dynamic chaperone-substrate interaction using NMR-informed molecular modeling. Journal of the American Chemical Society. PMID 27415450 DOI: 10.1021/Jacs.6B02382  0.397
2016 Horowitz S, Salmon L, Koldewey P, Ahlstrom LS, Martin R, Quan S, Afonine PV, van den Bedem H, Wang L, Xu Q, Trievel RC, Brooks CL, Bardwell JC. Visualizing chaperone-assisted protein folding. Nature Structural & Molecular Biology. PMID 27239796 DOI: 10.1038/Nsmb.3237  0.364
2016 Ahlstrom LS, Salmon L, Horowitz S, Dickson A, Brooks CL, Bardwell JC. NMR-Informed Molecular Modeling Uncovers the Conformational Landscape of Chaperone Binding with Unfolded Substrate Biophysical Journal. 110: 369a. DOI: 10.1016/J.Bpj.2015.11.1989  0.374
2015 Frank AT, Law SM, Ahlstrom LS, Brooks CL. Predicting Protein Backbone Chemical Shifts From Cα Coordinates: Extracting High Resolution Experimental Observables from Low Resolution Models. Journal of Chemical Theory and Computation. 11: 325-331. PMID 25620895 DOI: 10.1021/Ct5009125  0.331
2014 Ahlstrom LS, Miyashita O. Packing interface energetics in different crystal forms of the λ Cro dimer. Proteins. 82: 1128-41. PMID 24218107 DOI: 10.1002/Prot.24478  0.674
2013 Ahlstrom LS, Baker JL, Ehrlich K, Campbell ZT, Patel S, Vorontsov II, Tama F, Miyashita O. Network visualization of conformational sampling during molecular dynamics simulation. Journal of Molecular Graphics & Modelling. 46: 140-9. PMID 24211466 DOI: 10.1016/J.Jmgm.2013.10.003  0.597
2013 Ahlstrom LS, Dickson A, Brooks CL. Binding and folding of the small bacterial chaperone HdeA. The Journal of Physical Chemistry. B. 117: 13219-25. PMID 23738772 DOI: 10.1021/Jp403264S  0.335
2013 Ahlstrom LS, Miyashita O. Comparison of a simulated λ Cro dimer conformational ensemble to its NMR models International Journal of Quantum Chemistry. 113: 518-524. DOI: 10.1002/Qua.24029  0.707
2012 Ahlstrom LS, Miyashita O. Effect of Crystal Packing on Cro Dimer Conformation Biophysical Journal. 102: 45a. DOI: 10.1016/J.Bpj.2011.11.278  0.738
2011 Ahlstrom LS, Miyashita O. Molecular simulation uncovers the conformational space of the λ Cro dimer in solution. Biophysical Journal. 101: 2516-24. PMID 22098751 DOI: 10.1016/J.Bpj.2011.10.016  0.724
2011 Ahlstrom LS, Miyashita O. Adding Dynamical Insight to X-Ray Images by Solution and Crystal Molecular Dynamics Simulation Biophysical Journal. 100: 377a. DOI: 10.1016/J.Bpj.2010.12.2245  0.734
2010 Bartels T, Ahlstrom LS, Leftin A, Kamp F, Haass C, Brown MF, Beyer K. The N-terminus of the intrinsically disordered protein α-synuclein triggers membrane binding and helix folding. Biophysical Journal. 99: 2116-24. PMID 20923645 DOI: 10.1016/J.Bpj.2010.06.035  0.365
2010 Ahlstrom LS, Miyashita O. Comparison of λ Cro Solution Ensemble To Its Open and Closed Crystal Forms Biophysical Journal. 98: 28a. DOI: 10.1016/J.Bpj.2009.12.165  0.707
2010 Bartels T, Ahlstrom LS, Leftin A, Haas C, Brown MF, Beyer K. α-Synuclein N-Terminus Elicits Vesicle Binding and Folding Nucleation Biophysical Journal. 98: 258a. DOI: 10.1016/J.Bpj.2009.12.1403  0.413
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