Melissa Haendel - Publications

Affiliations: 
Medical Informatics & Clinical Epidemiology Oregon Health and Science University, Portland, OR 
Area:
informatics
Website:
http://www.ohsu.edu/xd/education/library/about/staff-directory/melissa-haendel.cfm

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Year Citation  Score
2020 Haendel M, Vasilevsky N, Unni D, Bologa C, Harris N, Rehm H, Hamosh A, Baynam G, Groza T, McMurry J, Dawkins H, Rath A, Thaxon C, Bocci G, Joachimiak MP, et al. How many rare diseases are there? Nature Reviews. Drug Discovery. 19: 77-78. PMID 32020066 DOI: 10.1038/D41573-019-00180-Y  0.36
2019 Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, ... ... Haendel MA, et al. The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. PMID 31701156 DOI: 10.1093/nar/gkz997  0.36
2019 Matentzoglu N, Osumi-Sutherland D, Balhoff JP, Bello S, Bradford Y, Cardmody L, Grove C, Harris MA, Harris N, Köhler S, McMurry J, Mungall C, Munoz-Torres M, Pilgrim C, Robb S, ... ... Haendel M, et al. uPheno 2: Framework for standardised representation of phenotypes across species F1000research. 8. DOI: 10.7490/F1000Research.1116540.1  0.36
2018 Köhler S, Carmody L, Vasilevsky N, Jacobsen JOB, Danis D, Gourdine JP, Gargano M, Harris NL, Matentzoglu N, McMurry JA, Osumi-Sutherland D, Cipriani V, Balhoff JP, Conlin T, Blau H, ... ... Haendel MA, et al. Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources. Nucleic Acids Research. PMID 30476213 DOI: 10.1093/Nar/Gky1105  0.36
2018 Vasilevsky NA, Foster ED, Engelstad ME, Carmody L, Might M, Chambers C, Dawkins HJS, Lewis J, Della Rocca MG, Snyder M, Boerkoel CF, Rath A, Terry SF, Kent A, Searle B, ... ... Haendel MA, et al. Plain-language medical vocabulary for precision diagnosis. Nature Genetics. 50: 474-476. PMID 29632381 DOI: 10.1038/S41588-018-0096-X  0.36
2017 Manolio TA, Fowler DM, Starita LM, Haendel MA, MacArthur DG, Biesecker LG, Worthey E, Chisholm RL, Green ED, Jacob HJ, McLeod HL, Roden D, Rodriguez LL, Williams MS, Cooper GM, et al. Bedside Back to Bench: Building Bridges between Basic and Clinical Genomic Research. Cell. 169: 6-12. PMID 28340351 DOI: 10.1016/J.Cell.2017.03.005  0.48
2017 Winfree L, McMurry J, Osumi-Sutherland D, Smedley D, Mungall C, Haendel M, Robinson P, Groza T. The Monarch Initiative: Semantic data integration across species and sources for disease discovery F1000research. 6. DOI: 10.7490/F1000Research.1113820.1  0.36
2016 McMurry JA, Köhler S, Washington NL, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, ... ... Haendel MA, et al. Navigating the Phenotype Frontier: The Monarch Initiative. Genetics. 203: 1491-5. PMID 27516611 DOI: 10.1534/Genetics.116.188870  0.64
2016 Diehl AD, Meehan TF, Bradford YM, Brush MH, Dahdul WM, Dougall DS, He Y, Osumi-Sutherland D, Ruttenberg A, Sarntivijai S, Van Slyke CE, Vasilevsky NA, Haendel MA, Blake JA, Mungall CJ. The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. Journal of Biomedical Semantics. 7: 44. PMID 27377652 DOI: 10.1186/S13326-016-0088-7  0.48
2016 Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, ... Haendel MA, et al. The Ontology for Biomedical Investigations. Plos One. 11: e0154556. PMID 27128319 DOI: 10.1371/Journal.Pone.0154556  0.64
2016 Druzinsky RE, Balhoff JP, Crompton AW, Done J, German RZ, Haendel MA, Herrel A, Herring SW, Lapp H, Mabee PM, Muller HM, Mungall CJ, Sternberg PW, Van Auken K, Vinyard CJ, et al. Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. Plos One. 11: e0149102. PMID 26870952 DOI: 10.1371/Journal.Pone.0149102  0.36
2016 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A cultural shift in publishing. The Journal of Comparative Neurology. 524: 8-22. PMID 26599696 DOI: 10.1002/Cne.23913  0.64
2016 Vasilevsky N, Engelstad M, Foster E, Mungall C, Robinson P, Kohler S, Haendel M. Enhancing the human phenotype ontology for use by the layperson F1000research. 5. DOI: 10.7490/F1000Research.1111752.1  0.36
2015 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SS, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics. PMID 26589523 DOI: 10.1007/S12021-015-9284-3  0.64
2015 Smedley D, Jacobsen JO, Jäger M, Köhler S, Holtgrewe M, Schubach M, Siragusa E, Zemojtel T, Buske OJ, Washington NL, Bone WP, Haendel MA, Robinson PN. Next-generation diagnostics and disease-gene discovery with the Exomiser. Nature Protocols. 10: 2004-2015. PMID 26562621 DOI: 10.1038/Nprot.2015.124  0.64
2015 Bone WP, Washington NL, Buske OJ, Adams DR, Davis J, Draper D, Flynn ED, Girdea M, Godfrey R, Golas G, Groden C, Jacobsen J, Köhler S, Lee EM, Links AE, ... ... Haendel MA, et al. Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 26562225 DOI: 10.1038/Gim.2015.137  0.64
2015 Philippakis AA, Azzariti DR, Beltran S, Brookes AJ, Brownstein CA, Brudno M, Brunner HG, Buske OJ, Carey K, Doll C, Dumitriu S, Dyke SO, den Dunnen JT, Firth HV, Gibbs RA, ... ... Haendel MA, et al. The Matchmaker Exchange: A Platform for Rare Disease Gene Discovery. Human Mutation. 36: 915-21. PMID 26295439 DOI: 10.1002/Humu.22858  0.64
2015 Mungall CJ, Washington NL, Nguyen-Xuan J, Condit C, Smedley D, Köhler S, Groza T, Shefchek K, Hochheiser H, Robinson PN, Lewis SE, Haendel MA. Use of Model Organism and Disease Databases to Support Matchmaking for Human Disease Gene Discovery. Human Mutation. 36: 979-84. PMID 26269093 DOI: 10.1002/Humu.22857  0.64
2015 Buske OJ, Girdea M, Dumitriu S, Gallinger B, Hartley T, Trang H, Misyura A, Friedman T, Beaulieu C, Bone WP, Links AE, Washington NL, Haendel MA, Robinson PN, Boerkoel CF, et al. PhenomeCentral: A Portal for Phenotypic and Genotypic Matchmaking of Patients with Rare Genetic Diseases. Human Mutation. PMID 26251998 DOI: 10.1002/Humu.22851  0.64
2015 Haendel MA, Vasilevsky N, Brush M, Hochheiser HS, Jacobsen J, Oellrich A, Mungall CJ, Washington N, Köhler S, Lewis SE, Robinson PN, Smedley D. Disease insights through cross-species phenotype comparisons. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 26092691 DOI: 10.1007/S00335-015-9577-8  0.64
2015 Ochs C, Perl Y, Geller J, Haendel M, Brush M, Arabandi S, Tu S. Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. Journal of Biomedical Informatics. PMID 26048076 DOI: 10.1016/J.Jbi.2015.05.018  0.64
2015 Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Haendel M, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033  0.64
2015 Deck J, Guralnick R, Walls R, Blum S, Haendel M, Matsunaga A, Wieczorek J. Meeting report: Identifying practical applications of ontologies for biodiversity informatics Standards in Genomic Sciences. 10. DOI: 10.1186/S40793-015-0014-0  0.64
2015 Groza T, Köhler S, Moldenhauer D, Vasilevsky N, Baynam G, Zemojtel T, Schriml LM, Kibbe WA, Schofield PN, Beck T, Vasant D, Brookes AJ, Zankl A, Washington NL, Mungall CJ, ... ... Haendel MA, et al. The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease American Journal of Human Genetics. DOI: 10.1016/j.ajhg.2015.05.020  0.64
2014 Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, Schürer SC, Pang C, Malone J, Parkinson H, Liu Y, Takatsuki T, Saijo K, Masuya H, Nakamura Y, ... ... Haendel MA, et al. CLO: The cell line ontology. Journal of Biomedical Semantics. 5: 37. PMID 25852852 DOI: 10.1186/2041-1480-5-37  0.64
2014 Köhler S, Schoeneberg U, Czeschik JC, Doelken SC, Hehir-Kwa JY, Ibn-Salem J, Mungall CJ, Smedley D, Haendel MA, Robinson PN. Clinical interpretation of CNVs with cross-species phenotype data. Journal of Medical Genetics. 51: 766-72. PMID 25280750 DOI: 10.1136/jmedgenet-2014-102633  0.64
2014 Thacker RW, Díaz MC, Kerner A, Vignes-Lebbe R, Segerdell E, Haendel MA, Mungall CJ. The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology. Journal of Biomedical Semantics. 5: 39. PMID 25276334 DOI: 10.1186/2041-1480-5-39  0.64
2014 Zemojtel T, Köhler S, Mackenroth L, Jäger M, Hecht J, Krawitz P, Graul-Neumann L, Doelken S, Ehmke N, Spielmann M, Oien NC, Schweiger MR, Krüger U, Frommer G, Fischer B, ... ... Haendel M, et al. Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome. Science Translational Medicine. 6: 252ra123. PMID 25186178 DOI: 10.1126/Scitranslmed.3009262  0.64
2014 Dahdul WM, Cui H, Mabee PM, Mungall CJ, Osumi-Sutherland D, Walls RL, Haendel MA. Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. Journal of Biomedical Semantics. 5: 34. PMID 25140222 DOI: 10.1186/2041-1480-5-34  0.64
2014 Oellrich A, Koehler S, Washington N, Mungall C, Lewis S, Haendel M, Robinson PN, Smedley D. The influence of disease categories on gene candidate predictions from model organism phenotypes. Journal of Biomedical Semantics. 5: S4. PMID 25093073 DOI: 10.1186/2041-1480-5-S1-S4  0.64
2014 Haendel MA, Balhoff JP, Bastian FB, Blackburn DC, Blake JA, Bradford Y, Comte A, Dahdul WM, Dececchi TA, Druzinsky RE, Hayamizu TF, Ibrahim N, Lewis SE, Mabee PM, Niknejad A, et al. Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. Journal of Biomedical Semantics. 5: 21. PMID 25009735 DOI: 10.1186/2041-1480-5-21  0.64
2014 Hoehndorf R, Haendel M, Stevens R, Rebholz-Schuhmann D. Thematic series on biomedical ontologies in JBMS: challenges and new directions. Journal of Biomedical Semantics. 5: 15. PMID 24602198 DOI: 10.1186/2041-1480-5-15  0.64
2014 Van Slyke CE, Bradford YM, Westerfield M, Haendel MA. The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio. Journal of Biomedical Semantics. 5: 12. PMID 24568621 DOI: 10.1186/2041-1480-5-12  0.64
2014 Köhler S, Doelken SC, Mungall CJ, Bauer S, Firth HV, Bailleul-Forestier I, Black GC, Brown DL, Brudno M, Campbell J, FitzPatrick DR, Eppig JT, Jackson AP, Freson K, Girdea M, ... ... Haendel M, et al. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Research. 42: D966-74. PMID 24217912 DOI: 10.1093/Nar/Gkt1026  0.64
2014 Robinson PN, Köhler S, Oellrich A, Wang K, Mungall CJ, Lewis SE, Washington N, Bauer S, Seelow D, Krawitz P, Gilissen C, Haendel M, Smedley D. Improved exome prioritization of disease genes through cross-species phenotype comparison. Genome Research. 24: 340-8. PMID 24162188 DOI: 10.1101/Gr.160325.113  0.64
2014 Tenenbaum JD, Sansone SA, Haendel M. A sea of standards for omics data: sink or swim? Journal of the American Medical Informatics Association : Jamia. 21: 200-3. PMID 24076747 DOI: 10.1136/amiajnl-2013-002066  0.64
2014 Iorns E, Gunn W, Erath J, Rodriguez A, Zhou J, Benzinou M, Bandrowski A, Booth B, Chaguturu R, Ellis M, Getz G, Haendel M, Ioannidis J, Li JL, Lippman M, et al. Replication attempt: "Effect of BMAP-28 antimicrobial peptides on Leishmania major promastigote and amastigote growth: Role of leishmanolysin in parasite survival" Plos One. 9. DOI: 10.1371/journal.pone.0114614  0.64
2014 Smedley D, Kohler S, Bone W, Oellrich A, Jacobsen J, Wang K, Mungall C, Washington N, Bauer S, Seelow D, Krawitz P, Boerkel C, Gilissen C, Haendel M, Lewis SE, et al. Use of animal models for exome prioritization of rare disease genes Orphanet Journal of Rare Diseases. 1-2. DOI: 10.1186/1750-1172-9-S1-O19  0.64
2014 Brochhausen M, Haendel M, Stoeckert C, Zheng J. Preface Ceur Workshop Proceedings. 1309: 56.  0.64
2013 Druzinsky R, Mungall C, Haendel M, Lapp H, Mabee P. What is an anatomy ontology? Anatomical Record (Hoboken, N.J. : 2007). 296: 1797-9. PMID 24127438 DOI: 10.1002/Ar.22805  0.64
2013 Vasilevsky NA, Brush MH, Paddock H, Ponting L, Tripathy SJ, Larocca GM, Haendel MA. On the reproducibility of science: unique identification of research resources in the biomedical literature. Peerj. 1: e148. PMID 24032093 DOI: 10.7717/Peerj.148  0.64
2013 Meehan TF, Vasilevsky NA, Mungall CJ, Dougall DS, Haendel MA, Blake JA, Diehl AD. Ontology based molecular signatures for immune cell types via gene expression analysis. Bmc Bioinformatics. 14: 263. PMID 24004649 DOI: 10.1186/1471-2105-14-263  0.64
2013 Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, ... ... Haendel M, et al. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database : the Journal of Biological Databases and Curation. 2013: bas056. PMID 23327936 DOI: 10.1093/Database/Bas056  0.64
2013 Torniai C, Essaid S, Lowe B, Corson-Rikert J, Haendel M. Finding common ground: Integrating the eagle-i and VIVO ontologies Ceur Workshop Proceedings. 1060: 46-49.  0.64
2013 Haendel M, Torniai C, Vasilevsky N, Hoffmann S, Bourges-Waldegg D. Eaglei-i: Ontology-driven federated search and data entry tools for discovering biomedical research resources Ceur Workshop Proceedings. 1060: 130-131.  0.64
2013 Brush MH, Mungall C, Washington N, Haendel MA. What's in a genotype?: An ontological characterization for integration of genetic variation data Ceur Workshop Proceedings. 1060: 105-108.  0.64
2013 Essaid S, Torniai C, Haendel MA. Enabling semantic search in a biospecimen repository Ceur Workshop Proceedings. 1060: 50-53.  0.64
2012 Dahdul WM, Balhoff JP, Blackburn DC, Diehl AD, Haendel MA, Hall BK, Lapp H, Lundberg JG, Mungall CJ, Ringwald M, Segerdell E, Van Slyke CE, Vickaryous MK, Westerfield M, Mabee PM. A unified anatomy ontology of the vertebrate skeletal system. Plos One. 7: e51070. PMID 23251424 DOI: 10.1371/Journal.Pone.0051070  0.64
2012 Chesler EJ, Haendel MA. The field of bioinformatics. Preface. International Review of Neurobiology. 103: xi-xii. PMID 23195125 DOI: 10.1016/B978-0-12-388408-4.09986-X  0.64
2012 Haendel MA, Chesler EJ. Lost and found in behavioral informatics. International Review of Neurobiology. 103: 1-18. PMID 23195118 DOI: 10.1016/B978-0-12-388408-4.00001-0  0.64
2012 Haendel MA, Vasilevsky NA, Wirz JA. Dealing with data: a case study on information and data management literacy. Plos Biology. 10: e1001339. PMID 22666180 DOI: 10.1371/journal.pbio.1001339  0.64
2012 Vasilevsky N, Johnson T, Corday K, Torniai C, Brush M, Segerdell E, Wilson M, Shaffer C, Robinson D, Haendel M. Research resources: curating the new eagle-i discovery system. Database : the Journal of Biological Databases and Curation. 2012: bar067. PMID 22434835 DOI: 10.1093/Database/Bar067  0.64
2012 Mungall CJ, Torniai C, Gkoutos GV, Lewis SE, Haendel MA. Uberon, an integrative multi-species anatomy ontology. Genome Biology. 13: R5. PMID 22293552 DOI: 10.1186/gb-2012-13-1-r5  0.64
2011 Brush MH, Vasilevsky N, Torniai C, Johnson T, Shaffer C, Haendel MA. Developing a reagent application ontology within the OBO foundry framework Ceur Workshop Proceedings. 833: 234-236.  0.64
2011 Mungall CJ, Haendel M, Ireland A, Manzoor S, Meehan T, Osumi-Sutherland D, Torniai C, Diehl AD. Modularization for the cell ontology Ceur Workshop Proceedings. 833: 370-376.  0.64
2011 Torniai C, Brush M, Vasilevsky N, Segerdell E, Wilson M, Johnson T, Corday K, Shaffer C, Haendel M. Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned Ceur Workshop Proceedings. 833: 101-108.  0.64
2011 Mungall CJ, Anderson D, Bandrowski A, Canada B, Chatyr-Aryamontri A, Cheng K, Conn PM, Dolinski K, Ellisman M, Eppig J, Grethe JS, Kemnitz J, Iadonato S, Larson SD, Magness C, ... ... Haendel MA, et al. An ontology-based approach to linking model organisms and resources to human diseases Ceur Workshop Proceedings. 833: 263-265.  0.64
2011 Mitchell S, Torniai C, Lowe B, Corson-Rikert J, Wilson M, Ahmed M, Chen S, Ding Y, Rejack N, Haendel M. Aligning research resource and researcher representation: The eagle-i and VIVO use case Ceur Workshop Proceedings. 833: 260-262.  0.64
2010 Dahdul WM, Lundberg JG, Midford PE, Balhoff JP, Lapp H, Vision TJ, Haendel MA, Westerfield M, Mabee PM. The teleost anatomy ontology: anatomical representation for the genomics age. Systematic Biology. 59: 369-83. PMID 20547776 DOI: 10.1093/Sysbio/Syq013  0.64
2010 Mungall CJ, Gkoutos GV, Smith CL, Haendel MA, Lewis SE, Ashburner M. Integrating phenotype ontologies across multiple species. Genome Biology. 11: R2. PMID 20064205 DOI: 10.1186/gb-2010-11-1-r2  0.64
2009 Washington NL, Haendel MA, Mungall CJ, Ashburner M, Westerfield M, Lewis SE. Linking human diseases to animal models using ontology-based phenotype annotation. Plos Biology. 7: e1000247. PMID 19956802 DOI: 10.1371/Journal.Pbio.1000247  0.64
2008 Sprague J, Bayraktaroglu L, Bradford Y, Conlin T, Dunn N, Fashena D, Frazer K, Haendel M, Howe DG, Knight J, Mani P, Moxon SA, Pich C, Ramachandran S, Schaper K, et al. The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes. Nucleic Acids Research. 36: D768-72. PMID 17991680 DOI: 10.1093/Nar/Gkm956  0.64
2008 Takayama S, Hostick U, Haendel M, Eisen J, Darimont B. An F-domain introduced by alternative splicing regulates activity of the zebrafish thyroid hormone receptor alpha. General and Comparative Endocrinology. 155: 176-89. PMID 17583703 DOI: 10.1016/J.Ygcen.2007.04.012  0.36
2007 Mabee PM, Arratia G, Coburn M, Haendel M, Hilton EJ, Lundberg JG, Mayden RL, Rios N, Westerfield M. Connecting evolutionary morphology to genomics using ontologies: a case study from Cypriniformes including zebrafish. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 655-68. PMID 17599725 DOI: 10.1002/Jez.B.21181  0.64
2007 Day-Richter J, Harris MA, Haendel M, Clark JI, Ireland A, Lomax J, Eilbeck K, Lewis S, Mungall C, Diehl AD, Drabkin H, Christie KR, Berardini T, Fey P, Bastiani CA, et al. OBO-Edit - An ontology editor for biologists Bioinformatics. 23: 2198-2200. PMID 17545183 DOI: 10.1093/Bioinformatics/Btm112  0.64
2007 Mabee PM, Ashburner M, Cronk Q, Gkoutos GV, Haendel M, Segerdell E, Mungall C, Westerfield M. Phenotype ontologies: the bridge between genomics and evolution. Trends in Ecology & Evolution. 22: 345-50. PMID 17416439 DOI: 10.1016/J.Tree.2007.03.013  0.64
2006 Sprague J, Bayraktaroglu L, Clements D, Conlin T, Fashena D, Frazer K, Haendel M, Howe DG, Mani P, Ramachandran S, Schaper K, Segerdell E, Song P, Sprunger B, Taylor S, et al. The Zebrafish Information Network: the zebrafish model organism database. Nucleic Acids Research. 34: D581-5. PMID 16381936 DOI: 10.1093/Nar/Gkj086  0.64
2005 Metcalfe SM, Muthukumarana PA, Thompson HL, Haendel MA, Lyons GE. Leukaemia inhibitory factor (LIF) is functionally linked to axotrophin and both LIF and axotrophin are linked to regulatory immune tolerance. Febs Letters. 579: 609-14. PMID 15670816 DOI: 10.1016/j.febslet.2004.12.027  0.64
2004 Haendel MA, Tilton F, Bailey GS, Tanguay RL. Developmental toxicity of the dithiocarbamate pesticide sodium metam in zebrafish. Toxicological Sciences : An Official Journal of the Society of Toxicology. 81: 390-400. PMID 15201444 DOI: 10.1093/toxsci/kfh202  0.64
2004 Reyes R, Haendel M, Grant D, Melancon E, Eisen JS. Slow degeneration of zebrafish Rohon-Beard neurons during programmed cell death. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 229: 30-41. PMID 14699575 DOI: 10.1002/Dvdy.10488  0.6
2000 Lyons GE, Swanson BJ, Haendel MA, Daniels J. Gene trapping in embryonic stem cells in vitro to identify novel developmentally regulated genes in the mouse. Methods in Molecular Biology (Clifton, N.J.). 136: 297-307. PMID 10840719 DOI: 10.1385/1-59259-065-9:297  0.64
1999 Hunter PJ, Swanson BJ, Haendel MA, Lyons GE, Cross JC. Mrj encodes a DnaJ-related co-chaperone that is essential for murine placental development. Development (Cambridge, England). 126: 1247-58. PMID 10021343  0.64
1998 Yamakawa K, Huot YK, Haendelt MA, Hubert R, Chen XN, Lyons GE, Korenberg JR. DSCAM: a novel member of the immunoglobulin superfamily maps in a Down syndrome region and is involved in the development of the nervous system. Human Molecular Genetics. 7: 227-37. PMID 9426258 DOI: 10.1093/hmg/7.2.227  0.64
1997 Baker RK, Haendel MA, Swanson BJ, Shambaugh JC, Micales BK, Lyons GE. In vitro preselection of gene-trapped embryonic stem cell clones for characterizing novel developmentally regulated genes in the mouse. Developmental Biology. 185: 201-14. PMID 9187083 DOI: 10.1006/dbio.1997.8541  0.64
1996 Haendel MA, Bollinger KE, Baas PW. Cytoskeletal changes during neurogenesis in cultures of avain neural crest cells. Journal of Neurocytology. 25: 289-301. PMID 8793733 DOI: 10.1007/Bf02284803  0.64
Low-probability matches
2020 Thessen AE, Walls RL, Vogt L, Singer J, Warren R, Buttigieg PL, Balhoff JP, Mungall CJ, McGuinness DL, Stucky BJ, Yoder MJ, Haendel MA. Transforming the study of organisms: Phenomic data models and knowledge bases. Plos Computational Biology. 16: e1008376. PMID 33232313 DOI: 10.1371/journal.pcbi.1008376  0.28
2020 Reese JT, Unni D, Callahan TJ, Cappelletti L, Ravanmehr V, Carbon S, Shefchek KA, Good BM, Balhoff JP, Fontana T, Blau H, Matentzoglu N, Harris NL, Munoz-Torres MC, Haendel MA, et al. KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response. Patterns (New York, N.Y.). 100155. PMID 33196056 DOI: 10.1016/j.patter.2020.100155  0.28
2020 Ong E, Wang LL, Schaub J, O'Toole JF, Steck B, Rosenberg AZ, Dowd F, Hansen J, Barisoni L, Jain S, de Boer IH, Valerius MT, Waikar SS, Park C, Crawford DC, ... ... Haendel M, et al. Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project. Nature Reviews. Nephrology. PMID 32939051 DOI: 10.1038/S41581-020-00335-W  0.28
2016 Mungall CJ, McMurry JA, Köhler S, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, ... ... Haendel MA, et al. The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. PMID 27899636 DOI: 10.1093/Nar/Gkw1128  0.28
2021 Reese JT, Coleman B, Chan L, Blau H, Callahan TJ, Cappelletti L, Fontana T, Bradwell KR, Harris NL, Casiraghi E, Valentini G, Karlebach G, Deer R, McMurry JA, Haendel MA, et al. Cyclooxygenase inhibitor use is associated with increased COVID-19 severity. Medrxiv : the Preprint Server For Health Sciences. PMID 33907758 DOI: 10.1101/2021.04.13.21255438  0.2
2020 Köhler S, Gargano M, Matentzoglu N, Carmody LC, Lewis-Smith D, Vasilevsky NA, Danis D, Balagura G, Baynam G, Brower AM, Callahan TJ, Chute CG, Est JL, Galer PD, Ganesan S, ... ... Haendel MA, et al. The Human Phenotype Ontology in 2021. Nucleic Acids Research. PMID 33264411 DOI: 10.1093/nar/gkaa1043  0.2
2019 Köhler S, Øien NC, Buske OJ, Groza T, Jacobsen JOB, McNamara C, Vasilevsky N, Carmody LC, Gourdine JP, Gargano M, McMurry JA, Danis D, Mungall CJ, Smedley D, Haendel M, et al. Encoding Clinical Data with the Human Phenotype Ontology for Computational Differential Diagnostics. Current Protocols in Human Genetics. 103: e92. PMID 31479590 DOI: 10.1002/Cphg.92  0.2
2019 Zhang XA, Yates A, Vasilevsky N, Gourdine JP, Callahan TJ, Carmody LC, Danis D, Joachimiak MP, Ravanmehr V, Pfaff ER, Champion J, Robasky K, Xu H, Fecho K, Walton NA, ... ... Haendel MA, et al. Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. Npj Digital Medicine. 2. PMID 31119199 DOI: 10.1038/s41746-019-0110-4  0.2
2017 McMurry JA, Juty N, Blomberg N, Burdett T, Conlin T, Conte N, Courtot M, Deck J, Dumontier M, Fellows DK, Gonzalez-Beltran A, Gormanns P, Grethe J, Hastings J, Hériché JK, ... ... Haendel MA, et al. Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. Plos Biology. 15: e2001414. PMID 28662064 DOI: 10.1371/Journal.Pbio.2001414  0.2
2017 Meehan TF, Conte N, West DB, Jacobsen JO, Mason J, Warren J, Chen CK, Tudose I, Relac M, Matthews P, Karp N, Santos L, Fiegel T, Ring N, Westerberg H, ... ... Haendel M, et al. Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium. Nature Genetics. PMID 28650483 DOI: 10.1038/Ng.3901  0.2
2016 Köhler S, Vasilevsky NA, Engelstad M, Foster E, McMurry J, Aymé S, Baynam G, Bello SM, Boerkoel CF, Boycott KM, Brudno M, Buske OJ, Chinnery PF, Cipriani V, Connell LE, ... ... Haendel M, et al. The Human Phenotype Ontology in 2017. Nucleic Acids Research. PMID 27899602 DOI: 10.1093/Nar/Gkw1039  0.2
2016 Links AE, Draper D, Lee E, Guzman J, Valivullah Z, Maduro V, Lebedev V, Didenko M, Tomlin G, Brudno M, Girdea M, Dumitriu S, Haendel MA, Mungall CJ, Smedley D, et al. Distributed Cognition and Process Management Enabling Individualized Translational Research: The NIH Undiagnosed Diseases Program Experience. Frontiers in Medicine. 3: 39. PMID 27785453 DOI: 10.3389/Fmed.2016.00039  0.2
2016 Dumontier M, Gray AJ, Marshall MS, Alexiev V, Ansell P, Bader G, Baran J, Bolleman JT, Callahan A, Cruz-Toledo J, Gaudet P, Gombocz EA, Gonzalez-Beltran AN, Groth P, Haendel M, et al. The health care and life sciences community profile for dataset descriptions. Peerj. 4: e2331. PMID 27602295 DOI: 10.7717/Peerj.2331  0.2
2016 Smedley D, Schubach M, Jacobsen JO, Köhler S, Zemojtel T, Spielmann M, Jäger M, Hochheiser H, Washington NL, McMurry JA, Haendel MA, Mungall CJ, Lewis SE, Groza T, Valentini G, et al. A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease. American Journal of Human Genetics. PMID 27569544 DOI: 10.1016/J.Ajhg.2016.07.005  0.2
2015 Robinson PN, Mungall CJ, Haendel M. Capturing phenotypes for precision medicine. Cold Spring Harbor Molecular Case Studies. 1: a000372. PMID 27148566 DOI: 10.1101/mcs.a000372  0.2
2015 Groza T, Köhler S, Moldenhauer D, Vasilevsky N, Baynam G, Zemojtel T, Schriml LM, Kibbe WA, Schofield PN, Beck T, Vasant D, Brookes AJ, Zankl A, Washington NL, Mungall CJ, ... ... Haendel MA, et al. The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease. American Journal of Human Genetics. 97: 111-24. PMID 26119816 DOI: 10.1016/J.Ajhg.2015.05.020  0.2
2014 Ibn-Salem J, Köhler S, Love MI, Chung HR, Huang N, Hurles ME, Haendel M, Washington NL, Smedley D, Mungall CJ, Lewis SE, Ott CE, Bauer S, Schofield PN, Mundlos S, et al. Deletions of chromosomal regulatory boundaries are associated with congenital disease. Genome Biology. 15: 423. PMID 25315429 DOI: 10.1186/S13059-014-0423-1  0.2
2016 Haendel MA, Kann MG, Washington NL. INNOVATIVE APPROACHES TO COMBINING GENOTYPE, PHENOTYPE, EPIGENETIC, AND EXPOSURE DATA FOR PRECISION DIAGNOSTICS. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 21: 93-5. PMID 26776176  0.16
2021 Rando HM, Bennett TD, Byrd JB, Bramante C, Callahan TJ, Chute CG, Davis HE, Deer R, Gagnier J, Koraishy FM, Liu F, McMurry JA, Moffitt RA, Pfaff ER, Reese JT, ... ... Haendel MA, et al. Challenges in defining Long COVID: Striking differences across literature, Electronic Health Records, and patient-reported information. Medrxiv : the Preprint Server For Health Sciences. PMID 33791733 DOI: 10.1101/2021.03.20.21253896  0.12
2020 Rubinstein YR, Robinson PN, Gahl WA, Avillach P, Baynam G, Cederroth H, Goodwin RM, Groft SC, Hansson MG, Harris NL, Huser V, Mascalzoni D, McMurry JA, Might M, Nellaker C, ... ... Haendel MA, et al. The case for open science: rare diseases. Jamia Open. 3: 472-486. PMID 33426479 DOI: 10.1093/jamiaopen/ooaa030  0.12
2020 Robinson PN, Haendel MA. Ontologies, Knowledge Representation, and Machine Learning for Translational Research: Recent Contributions. Yearbook of Medical Informatics. 29: 159-162. PMID 32823310 DOI: 10.1055/s-0040-1701991  0.12
2020 Robinson PN, Ravanmehr V, Jacobsen JOB, Danis D, Zhang XA, Carmody LC, Gargano MA, Thaxton CL, Karlebach G, Reese J, Holtgrewe M, Köhler S, McMurry JA, Haendel MA, et al. Interpretable Clinical Genomics with a Likelihood Ratio Paradigm. American Journal of Human Genetics. PMID 32755546 DOI: 10.1016/j.ajhg.2020.06.021  0.12
2019 Gourdine JF, Brush MH, Vasilevsky NA, Shefchek K, Köhler S, Matentzoglu N, Munoz-Torres MC, McMurry JA, Zhang XA, Robinson PN, Haendel MA. Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery. Database : the Journal of Biological Databases and Curation. 2019. PMID 31735951 DOI: 10.1093/Database/Baz114  0.12
2019 Nellåker C, Alkuraya FS, Baynam G, Bernier RA, Bernier FPJ, Boulanger V, Brudno M, Brunner HG, Clayton-Smith J, Cogné B, Dawkins HJS, deVries BBA, Douzgou S, Dudding-Byth T, Eichler EE, ... ... Haendel M, et al. Enabling Global Clinical Collaborations on Identifiable Patient Data: The Minerva Initiative. Frontiers in Genetics. 10: 611. PMID 31417602 DOI: 10.3389/Fgene.2019.00611  0.12
2019 Cacheiro P, Haendel MA, Smedley D. New models for human disease from the International Mouse Phenotyping Consortium. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 31127358 DOI: 10.1007/s00335-019-09804-5  0.12
2018 Haendel MA, Chute CG, Robinson PN. Classification, Ontology, and Precision Medicine. The New England Journal of Medicine. 379: 1452-1462. PMID 30304648 DOI: 10.1056/Nejmra1615014  0.12
2018 Arachchi H, Wojcik MH, Weisburd B, Jacobsen JOB, Valkanas E, Baxter S, Byrne AB, O'Donnell-Luria AH, Haendel M, Smedley D, MacArthur DG, Philippakis AA, Rehm HL. matchbox: An open-source tool for patient matching via the Matchmaker Exchange. Human Mutation. PMID 30240502 DOI: 10.1002/Humu.23655  0.12
2017 Baynam G, Bowman F, Lister K, Walker CE, Pachter N, Goldblatt J, Boycott KM, Gahl WA, Kosaki K, Adachi T, Ishii K, Mahede T, McKenzie F, Townshend S, Slee J, ... ... Haendel M, et al. Improved Diagnosis and Care for Rare Diseases through Implementation of Precision Public Health Framework. Advances in Experimental Medicine and Biology. 1031: 55-94. PMID 29214566 DOI: 10.1007/978-3-319-67144-4_4  0.12
2017 Meehan TF, Conte N, Goldstein T, Inghirami G, Murakami MA, Brabetz S, Gu Z, Wiser JA, Dunn P, Begley DA, Krupke DM, Bertotti A, Bruna A, Brush MH, Byrne AT, ... ... Haendel MA, et al. PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models. Cancer Research. 77: e62-e66. PMID 29092942 DOI: 10.1158/0008-5472.Can-17-0582  0.12
2017 Gall T, Valkanas E, Bello C, Markello T, Adams C, Bone WP, Brandt AJ, Brazill JM, Carmichael L, Davids M, Davis J, Diaz-Perez Z, Draper D, Elson J, Flynn ED, ... ... Haendel MA, et al. Defining Disease, Diagnosis, and Translational Medicine within a Homeostatic Perturbation Paradigm: The National Institutes of Health Undiagnosed Diseases Program Experience. Frontiers in Medicine. 4: 62. PMID 28603714 DOI: 10.3389/Fmed.2017.00062  0.12
2021 Alamgir J, Yajima M, Ergas R, Chen X, Hill N, Munir N, Saeed M, Gersing K, Haendel M, Chute CG, Abid MR. Drug repositioning candidates identified using in-silico quasi-quantum molecular simulation demonstrate reduced COVID-19 mortality in 1.5M patient records. Medrxiv : the Preprint Server For Health Sciences. PMID 33851170 DOI: 10.1101/2021.03.22.21254110  0.04
2021 Chan L, Vasilevsky N, Thessen A, McMurry J, Haendel M. The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research. Database : the Journal of Biological Databases and Curation. 2021. PMID 33507269 DOI: 10.1093/database/baab003  0.04
2021 Chan L, Vasilevsky N, Thessen A, McMurry J, Haendel M. The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research. Database : the Journal of Biological Databases and Curation. 2021. PMID 33494105 DOI: 10.1093/database/baab003  0.04
2020 Duncan WD, Thyvalikakath T, Haendel M, Torniai C, Hernandez P, Song M, Acharya A, Caplan DJ, Schleyer T, Ruttenberg A. Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology. Journal of Biomedical Semantics. 11: 8. PMID 32819435 DOI: 10.1186/S13326-020-00222-0  0.04
2019 Adekile A, Anie KA, Hamda CB, Brown B, Bukini D, Campbell A, Chaouch M, Chimusa E, Chunda-Liyoka C, Dennis-Antwi J, Derebail VK, Flor-Park M, Geard A, Ghedira K, Haendel M, et al. The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation Database. 2019. PMID 31769834 DOI: 10.1093/Database/Baz118  0.04
2019 Hotchkiss J, Manyisa N, Adadey SM, Oluwole OG, Wonkam E, Mnika K, Yalcouye A, Nembaware V, Haendel M, Vasilevsky N, Mulder NJ, Jupp S, Wonkam A, Mazandu GK. The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research. Genes. 10. PMID 31766582 DOI: 10.3390/Genes10120960  0.04
2019 Mishra R, Burke A, Gitman B, Verma P, Engelstad M, Haendel MA, Alevizos I, Gahl WA, Collins MT, Lee JS, Sincan M. Data-driven method to enhance craniofacial and oral phenotype vocabularies. Journal of the American Dental Association (1939). 150: 933-939.e2. PMID 31668172 DOI: 10.1016/j.adaj.2019.05.029  0.04
2019 Nicoli ER, Weston MR, Hackbarth M, Becerril A, Larson A, Zein WM, Baker PR, Burke JD, Dorward H, Davids M, Huang Y, Adams DR, Zerfas PM, Chen D, Markello TC, et al. Lysosomal Storage and Albinism Due to Effects of a De Novo CLCN7 Variant on Lysosomal Acidification. American Journal of Human Genetics. PMID 31155284 DOI: 10.1016/J.Ajhg.2019.04.008  0.04
2019 Vasilevsky N, Zhang A, Yates A, Gourdine J, Callahan T, Haendel M, Hunter L, Robinson P. LOINC2HPO: Curation of Phenotype Data from the Electronic Health Records using the Human Phenotype Ontology F1000research. 8. DOI: 10.7490/F1000Research.1116517.1  0.04
2019 Heath A, Raman P, Zhu Y, Lilly J, Taylor D, Storm P, Waanders A, Ferretti V, Mattioni M, Davis-Dusenbery B, Flamig Z, Grossman R, Volchenboum S, Mueller S, Nazarian J, ... ... Haendel M, et al. Tmod-19. Gabriella Miller Kids First Data Resource Center: Large-Scale Harmonized Clinical And Genomic Data Platform To Support Childhood Cancer And Structural Birth Defect Research Neuro-Oncology. 21. DOI: 10.1093/Neuonc/Noz036.256  0.04
2018 Dolman L, Page A, Babb L, Freimuth RR, Arachchi H, Bizon C, Brush M, Fiume M, Haendel M, Hansen DP, Milosavljevic A, Patel RY, Pawliczek P, Yates AD, Rehm HL. ClinGen advancing genomic data-sharing standards as a GA4GH driver project. Human Mutation. 39: 1686-1689. PMID 30311379 DOI: 10.1002/Humu.23625  0.04
2017 Bada M, Vasilevsky N, Baumgartner WA, Haendel M, Hunter LE. Gold-standard ontology-based anatomical annotation in the CRAFT Corpus. Database : the Journal of Biological Databases and Curation. 2017. PMID 31725864 DOI: 10.1093/Database/Bax087  0.04
2017 Sobreira NLM, Arachchi H, Buske OJ, Chong JX, Hutton B, Foreman J, Schiettecatte F, Groza T, Jacobsen JOB, Haendel MA, Boycott KM, Hamosh A, Rehm HL. Matchmaker Exchange. Current Protocols in Human Genetics. 95: 9.31.1-9.31.15. PMID 29044468 DOI: 10.1002/Cphg.50  0.04
2017 Wang J, Al-Ouran R, Hu Y, Kim SY, Wan YW, Wangler MF, Yamamoto S, Chao HT, Comjean A, Mohr SE, Perrimon N, Liu Z, Bellen HJ. MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome. American Journal of Human Genetics. PMID 28502612 DOI: 10.1016/J.Ajhg.2017.04.010  0.04
2017 Vasilevsky N, Laderas T, Wirz J, Pederson B, Dorr DA, Hersh W, McWeeney S, Haendel M. Training future biocurators through data science trainings and open educational resources F1000research. 6. DOI: 10.7490/F1000Research.1113751.1  0.04
2017 Vasilevsky N, Minnier J, Haendel M, Champieux R. A need for better data sharing policies: a review of data sharing policies in biomedical journals F1000research. 6. DOI: 10.7490/F1000Research.1113750.1  0.04
2016 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: a cultural shift in publishing. Brain and Behavior. 6: e00417. PMID 27110440 DOI: 10.1002/Brb3.417  0.04
2016 Bada M, Vasilevsky N, Haendel M, Hunter L. Updating and extending the concept annotations of the CRAFT corpus F1000research. 5. DOI: 10.7490/F1000Research.1111753.1  0.04
2016 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A cultural shift in publishing Brain and Behavior. 6: 1-14. DOI: 10.1002/brb3.417  0.04
2015 Vita R, Vasilevsky N, Bandrowski A, Haendel M, Sette A, Peters B. Reproducibility and Conflicts in Immune Epitope Data. Immunology. PMID 26678806 DOI: 10.1111/Imm.12566  0.04
2015 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan S, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A cultural shift in publishing. F1000research. 4: 134. PMID 26594330 DOI: 10.12688/F1000Research.6555.2  0.04
2014 Pearse R, Bourges-Waldegg D, Napolitano C, Brush M, Haendel M, Cheng S, Noggle S, Lipnick S, Johnson T. A centralized smart platform for open sharing of iPS cell information F1000research. 5. DOI: 10.7490/F1000Research.1095961.1  0.04
2013 Torniai C, Essaid S, Barnes C, Conlon M, Williams S, Hajagos JG, Bremer E, Corson-Rikert J, Haendel M. From EHRs to Linked Data: representing and mining encounter data for clinical expertise evaluation. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2013: 165. PMID 24303330  0.04
2013 Schleyer TK, Ruttenberg A, Duncan W, Haendel M, Torniai C, Acharya A, Song M, Thyvalikakath TP, Liu K, Hernandez P. An ontology-based method for secondary use of electronic dental record data. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2013: 234-8. PMID 24303273  0.04
2021 Wilson SL, Way GP, Bittremieux W, Armache JP, Haendel MA, Hoffman MM. Sharing biological data: why, when, and how. Febs Letters. 595: 847-863. PMID 33843054 DOI: 10.1002/1873-3468.14067  0.01
2021 Thessen AE, Bogdan P, Patterson DJ, Casey TM, Hinojo-Hinojo C, de Lange O, Haendel MA. From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences. Plos Biology. 19: e3001129. PMID 33770077 DOI: 10.1371/journal.pbio.3001129  0.01
2021 Li J, Hojlo MA, Chennuri S, Gujral N, Paterson HL, Shefchek KA, Genetti CA, Cohn EL, Sewalk KC, Garvey EA, Buttermore ED, Anderson NC, Beggs AH, Agrawal PB, Brownstein JS, ... Haendel MA, et al. Underrepresentation of Phenotypic Variability of 16p13.11 Microduplication Syndrome Assessed With an Online Self-Phenotyping Tool (Phenotypr): Cohort Study. Journal of Medical Internet Research. 23: e21023. PMID 33724192 DOI: 10.2196/21023  0.01
2021 Bennett TD, Moffitt RA, Hajagos JG, Amor B, Anand A, Bissell MM, Bradwell KR, Bremer C, Byrd JB, Denham A, DeWitt PE, Gabriel D, Garibaldi BT, Girvin AT, Guinney J, ... ... Haendel MA, et al. The National COVID Cohort Collaborative: Clinical Characterization and Early Severity Prediction. Medrxiv : the Preprint Server For Health Sciences. PMID 33469592 DOI: 10.1101/2021.01.12.21249511  0.01
2020 D'Angelo CS, Hermes A, McMaster CR, Prichep E, Richer É, van der Westhuizen FH, Repetto GM, Mengchun G, Malherbe H, Reichardt JKV, Arbour L, Hudson M, du Plessis K, Haendel M, Wilcox P, et al. Barriers and Considerations for Diagnosing Rare Diseases in Indigenous Populations. Frontiers in Pediatrics. 8: 579924. PMID 33381478 DOI: 10.3389/fped.2020.579924  0.01
2020 Thessen AE, Grondin CJ, Kulkarni RD, Brander S, Truong L, Vasilevsky NA, Callahan TJ, Chan LE, Westra B, Willis M, Rothenberg SE, Jarabek AM, Burgoon L, Korrick SA, Haendel MA. Community Approaches for Integrating Environmental Exposures into Human Models of Disease. Environmental Health Perspectives. 128: 125002. PMID 33369481 DOI: 10.1289/EHP7215  0.01
2020 Tcheandjieu C, Aguirre M, Gustafsson S, Saha P, Potiny P, Haendel M, Ingelsson E, Rivas MA, Priest JR. A phenome-wide association study of 26 mendelian genes reveals phenotypic expressivity of common and rare variants within the general population. Plos Genetics. 16: e1008802. PMID 33226994 DOI: 10.1371/journal.pgen.1008802  0.01
2020 Vasilevsky NA, Hosseini M, Teplitzky S, Ilik V, Mohammadi E, Schneider J, Kern B, Colomb J, Edmunds SC, Gutzman K, Himmelstein DS, White M, Smith B, O'Keefe L, Haendel M, et al. Is authorship sufficient for today's collaborative research? A call for contributor roles. Accountability in Research. 1-21. PMID 32602379 DOI: 10.1080/08989621.2020.1779591  0.01
2020 Wagner AH, Walsh B, Mayfield G, Tamborero D, Sonkin D, Krysiak K, Deu-Pons J, Duren RP, Gao J, McMurry J, Patterson S, Del Vecchio Fitz C, Pitel BA, Sezerman OU, Ellrott K, ... ... Haendel M, et al. A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer. Nature Genetics. PMID 32246132 DOI: 10.1038/S41588-020-0603-8  0.01
2019 Clarke DJB, Wang L, Jones A, Wojciechowicz ML, Torre D, Jagodnik KM, Jenkins SL, McQuilton P, Flamholz Z, Silverstein MC, Schilder BM, Robasky K, Castillo C, Idaszak R, Ahalt SC, ... ... Haendel MA, et al. FAIRshake: Toolkit to Evaluate the FAIRness of Research Digital Resources. Cell Systems. PMID 31677972 DOI: 10.1016/J.Cels.2019.09.011  0.01
2019 Accogli A, Calabretta S, St-Onge J, Boudrahem-Addour N, Dionne-Laporte A, Joset P, Azzarello-Burri S, Rauch A, Krier J, Fieg E, Pallais JC, McConkie-Rosell A, McDonald M, Freedman SF, et al. De Novo Pathogenic Variants in N-cadherin Cause a Syndromic Neurodevelopmental Disorder with Corpus Collosum, Axon, Cardiac, Ocular, and Genital Defects. American Journal of Human Genetics. 105: 854-868. PMID 31585109 DOI: 10.1016/J.Ajhg.2019.09.005  0.01
2019 Kanca O, Andrews JC, Lee PT, Patel C, Braddock SR, Slavotinek AM, Cohen JS, Gubbels CS, Aldinger KA, Williams J, Indaram M, Fatemi A, Yu TW, Agrawal PB, Vezina G, et al. De Novo Variants in WDR37 Are Associated with Epilepsy, Colobomas, Dysmorphism, Developmental Delay, Intellectual Disability, and Cerebellar Hypoplasia. American Journal of Human Genetics. 105: 672-674. PMID 31491411 DOI: 10.1016/J.Ajhg.2019.07.017  0.01
2019 Johnson BV, Kumar R, Oishi S, Alexander S, Kasherman M, Vega MS, Ivancevic A, Gardner A, Domingo D, Corbett M, Parnell E, Yoon S, Oh T, Lines M, Lefroy H, et al. Partial Loss of USP9X Function Leads to a Male Neurodevelopmental and Behavioral Disorder Converging on Transforming Growth Factor β Signaling. Biological Psychiatry. PMID 31443933 DOI: 10.1016/J.Biopsych.2019.05.028  0.01
2019 Kanca O, Andrews JC, Lee PT, Patel C, Braddock SR, Slavotinek AM, Cohen JS, Gubbels CS, Aldinger KA, Williams J, Indaram M, Fatemi A, Yu TW, Agrawal PB, Vezina G, et al. De Novo Variants in WDR37 Are Associated with Epilepsy, Colobomas, Dysmorphism, Developmental Delay, Intellectual Disability, and Cerebellar Hypoplasia. American Journal of Human Genetics. PMID 31327508 DOI: 10.1016/J.Ajhg.2019.06.014  0.01
2019 Fukushima M, Austin C, Sato N, Maruyama T, Navarro E, Rocca M, Demotes J, Haendel M, Volchenboum SL, Cowperthwaite M, Silverstein JC, Webb C, Sim I, Chase M, Speakman J, et al. The Global academic research organization network: Data sharing to cure diseases and enable learning health systems. Learning Health Systems. 3: e10073. PMID 31245596 DOI: 10.1002/lrh2.10073  0.01
2019 Tang YA, Pichler K, Füllgrabe A, Lomax J, Malone J, Munoz-Torres MC, Vasant DV, Williams E, Haendel M. Ten quick tips for biocuration. Plos Computational Biology. 15: e1006906. PMID 31048830 DOI: 10.1371/Journal.Pcbi.1006906  0.01
2019 Taylor DM, Aronow BJ, Tan K, Bernt K, Salomonis N, Greene CS, Frolova A, Henrickson SE, Wells A, Pei L, Jaiswal JK, Whitsett J, Hamilton KE, MacParland SA, Kelsen J, ... ... Haendel M, et al. The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution. Developmental Cell. PMID 30930166 DOI: 10.1016/J.Devcel.2019.03.001  0.01
2019 Carbon S, Champieux R, McMurry JA, Winfree L, Wyatt LR, Haendel MA. An analysis and metric of reusable data licensing practices for biomedical resources. Plos One. 14: e0213090. PMID 30917137 DOI: 10.1371/Journal.Pone.0213090  0.01
2018 Machol K, Rousseau J, Ehresmann S, Garcia T, Nguyen TTM, Spillmann RC, Sullivan JA, Shashi V, Jiang YH, Stong N, Fiala E, Willing M, Pfundt R, Kleefstra T, Cho MT, et al. Expanding the Spectrum of BAF-Related Disorders: De Novo Variants in SMARCC2 Cause a Syndrome with Intellectual Disability and Developmental Delay. American Journal of Human Genetics. PMID 30580808 DOI: 10.1016/J.Ajhg.2018.11.007  0.01
2018 Marcogliese PC, Shashi V, Spillmann RC, Stong N, Rosenfeld JA, Koenig MK, Martínez-Agosto JA, Herzog M, Chen AH, Dickson PI, Lin HJ, Vera MU, Salamon N, Ortiz D, Infante E, et al. IRF2BPL Is Associated with Neurological Phenotypes. American Journal of Human Genetics. PMID 30057031 DOI: 10.1016/J.Ajhg.2018.07.006  0.01
2018 Oláhová M, Yoon WH, Thompson K, Jangam S, Fernandez L, Davidson JM, Kyle JE, Grove ME, Fisk DG, Kohler JN, Holmes M, Dries AM, Huang Y, Zhao C, Contrepois K, et al. Biallelic Mutations in ATP5F1D, which Encodes a Subunit of ATP Synthase, Cause a Metabolic Disorder. American Journal of Human Genetics. PMID 29478781 DOI: 10.1016/J.Ajhg.2018.01.020  0.01
2017 Lawler M, Haussler D, Siu LL, Haendel MA, McMurry JA, Knoppers BM, Chanock SJ, Calvo F, The BT, Walia G, Banks I, Yu PP, Staudt LM, Sawyers CL. Sharing Clinical and Genomic Data on Cancer - The Need for Global Solutions. The New England Journal of Medicine. 376: 2006-2009. PMID 28538124 DOI: 10.1056/Nejmp1612254  0.01
2017 Vasilevsky NA, Minnier J, Haendel MA, Champieux RE. Reproducible and reusable research: are journal data sharing policies meeting the mark? Peerj. 5: e3208. PMID 28462024 DOI: 10.7717/Peerj.3208  0.01
2017 Ramoni RB, Mulvihill JJ, Adams DR, Allard P, Ashley EA, Bernstein JA, Gahl WA, Hamid R, Loscalzo J, McCray AT, Shashi V, Tifft CJ, Wise AL. The Undiagnosed Diseases Network: Accelerating Discovery about Health and Disease. American Journal of Human Genetics. 100: 185-192. PMID 28157539 DOI: 10.1016/J.Ajhg.2017.01.006  0.01
2017 Schoch K, Meng L, Szelinger S, Bearden DR, Stray-Pedersen A, Busk OL, Stong N, Liston E, Cohn RD, Scaglia F, Rosenfeld JA, Tarpinian J, Skraban CM, Deardorff MA, Friedman JN, et al. A Recurrent De Novo Variant in NACC1 Causes a Syndrome Characterized by Infantile Epilepsy, Cataracts, and Profound Developmental Delay. American Journal of Human Genetics. PMID 28132692 DOI: 10.1016/J.Ajhg.2016.12.013  0.01
2016 Chao HT, Davids M, Burke E, Pappas JG, Rosenfeld JA, McCarty AJ, Davis T, Wolfe L, Toro C, Tifft C, Xia F, Stong N, Johnson TK, Warr CG, et al. A Syndromic Neurodevelopmental Disorder Caused by De Novo Variants in EBF3. American Journal of Human Genetics. PMID 28017372 DOI: 10.1016/J.Ajhg.2016.11.018  0.01
2016 Mulder N, Nembaware V, Adekile A, Anie KA, Inusa B, Brown B, Campbell A, Chinenere F, Chunda-Liyoka C, Derebail VK, Geard A, Ghedira K, Hamilton CM, Hanchard NA, Haendel M, et al. Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease. Applied & Translational Genomics. 9: 23-9. PMID 27354937 DOI: 10.1016/J.Atg.2016.03.005  0.01
2016 Mattingly CJ, Boyles R, Lawler CP, Haugen AC, Dearry A, Haendel M. Laying a Community-Based Foundation for Data-Driven Semantic Standards in Environmental Health Sciences. Environmental Health Perspectives. 124: 1136-40. PMID 26871594 DOI: 10.1289/Ehp.1510438  0.01
2016 Haendel M, Papatheodorou I, Oellrich A, Mungall CJ, Washington N, Lewis SE, Robinson PN, Smedley D. Tools for exploring mouse models of human disease Drug Discovery Today: Disease Models. 20: 21-26. DOI: 10.1016/J.Ddmod.2017.07.004  0.01
2016 Mulder N, Nembaware V, Adekile A, Anie KA, Inusa B, Brown B, Campbell A, Chinenere F, Chunda-Liyoka C, Derebail VK, Geard A, Ghedira K, Hamilton CM, Hanchard NA, Haendel M, et al. Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease Applied and Translational Genomics. DOI: 10.1016/j.atg.2016.03.005  0.01
2015 Starr J, Castro E, Crosas M, Dumontier M, Downs RR, Duerr R, Haak LL, Haendel M, Herman I, Hodson S, Hourclé J, Kratz JE, Lin J, Nielsen LH, Nurnberger A, et al. Achieving human and machine accessibility of cited data in scholarly publications. Peerj. Computer Science. 1. PMID 26167542 DOI: 10.7717/Peerj-Cs.1  0.01
1992 Haendel MS. Yet another child Jama: the Journal of the American Medical Association. 268: 1502. DOI: 10.1001/jama.1992.03490120006001  0.01
1991 Benjamin M, Haendel M. Cuba. A healthy revolution? Links (New York, N.Y.). 8: 3-6. PMID 12159276  0.01
1988 Gehring J, Koenig W, Haendel M, Sund M, Mathes P. Noninvasive detection of anterior wall asynergies by cardiokymography compared to electrocardiography. Cardiology. 75: 100-7. PMID 3370652  0.01
1981 Ammon HPT, Haendel M. Crataegus, toxicology and pharmacology. Part III: Pharmacodynamics and pharmacokinetics | CRATAEGUS, TOXIKOLOGIE UND PHARMAKOLOGIE. TEIL III: PHARMAKODYNAMIK UND PHARMAKOKINETIK Planta Medica. 43: 313-322. PMID 7199189  0.01
1981 Ammon HPT, Haendel M. Crataegus, toxicology and pharmacology. Part I: Toxicity | CRATAEGUS, TOXIKOLOGIE UND PHARMAKOLOGIE. TEIL I: TOXIZITAT Planta Medica. 43: 105-120. PMID 7198272  0.01
1981 Verspohl EJ, Hagenloh I, Haendel M, Grether A. In vitro inhibition of glucose-, leucine-, arginine-, and tolbutamide-induced insulin secretion by exogenous insulin Naunyn-Schmiedeberg's Archives of Pharmacology. 316: 183.  0.01
1980 Lutz S, Haendel M, Grimm A, Ammon HPT. In vitro effect of exogenous insulin on islet GSH and insulin secretion Naunyn-Schmiedeberg's Archives of Pharmacology. 313: no. 266.  0.01
1980 Ammon HPT, Lutz S, Grimm A, Haendel M. Regulation of islet GSH by glucose and exogenous insulin Diabetologia. 19: 252.  0.01
1979 Verspohl EJ, Haendel M, Ammon HPT. Pentosephosphate shunt activity of rat pancreatic islets: Its dependence on glucose concentration Endocrinology. 105: 1269-1274. PMID 385305  0.01
1978 Ammon HPT, Verspohl EJ, Haendel M. Relationship between specific binding of insulin to pancreatic islets and insulin induced inhibition of insulin secretion Diabetologia. 15: No. 10.  0.01
1977 Verspohl E, Haendel M, Ammon HPT. Effect of anti insulin serum on pentose phosphate shunt (PPS) in rat islets of langerhans Naunyn-Schmiedeberg's Archives of Pharmacology. 297: No.158.  0.01
1963 Duomarco J, Rimini R, Giambruno CE, Seoane R, Haendel M. Systemic venous collapse in man The American Journal of Cardiology. 11: 357-361.  0.01
1930 Haendel M, Malet J. Anaphylaxiestudien - III. Peptonshock und retikuloendotheliales System Zeitschrift FüR Die Gesamte Experimentelle Medizin. 71: 683-687. DOI: 10.1007/BF02627057  0.01
1930 Haendel M. Anaphylaxiestudien - II. Beeinflussung des anaphylaktischen Shocks durch Einwirkung auf das retikuloendotheliale System Zeitschrift FüR Die Gesamte Experimentelle Medizin. 71: 675-682. DOI: 10.1007/BF02627056  0.01
1930 Haendel M, Malet J. Über Ergosterinvergiftung - I. Beitrag zum Lipoidstoffwechsel Virchows Archiv FüR Pathologische Anatomie Und Physiologie Und FüR Klinische Medizin. 276: 1-13. DOI: 10.1007/BF02275129  0.01
1929 Haendel M, Malet J. Beiträge zur Pharmakologie des retikuloendothelialen Systems - IV. Mitteilung. Wirkung verschiedener Faktoren Zeitschrift FüR Die Gesamte Experimentelle Medizin. 67: 315-318. DOI: 10.1007/BF02610887  0.01
1929 Haendel M, Malet J. Beiträge zur Pharmakologie des retikuloendothelialen Systems - III. Mitteilung. Ionenwirkungen Zeitschrift FüR Die Gesamte Experimentelle Medizin. 67: 310-314. DOI: 10.1007/BF02610886  0.01
1929 Haendel M, Malet J. Beiträge zur Pharmakologie des reticulo-endothelialen Systems - II. Mitteilung: Wirkung der Inkrete Virchows Archiv FüR Pathologische Anatomie Und Physiologie Und FüR Klinische Medizin. 273: 127-133. DOI: 10.1007/BF02134166  0.01
1929 Haendel M, Malet J. Beiträge zur Pharmakologie des reticulo-endothelialen Systems - I. Mitteilung. Wirkung von Eiweiß- und Impfstoffen Virchows Archiv FüR Pathologische Anatomie Und Physiologie Und FüR Klinische Medizin. 273: 116-126. DOI: 10.1007/BF02134165  0.01
1929 Haendel M, Malet J. Über die Beziehungen des Geschwulstwachstums zur Ernährung und zum Stoffwechsel - IV. Mitteilung. Teerpinselung und Gewebslipoide Zeitschrift FüR Krebsforschung. 29: 324-329. DOI: 10.1007/BF01634495  0.01
1929 Haendel M, Malet J. Über die Beziehungen des Geschwulstwachstums zur Ernährung und zum Stoffwechsel - III. Mitteilung. Teerpinselung und Glykogengehalt Zeitschrift FüR Krebsforschung. 29: 320-323. DOI: 10.1007/BF01634494  0.01
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