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Oliver Joaquin Rando - Publications

Affiliations: 
2002 Stanford University, Palo Alto, CA 
Website:
https://profiles.umassmed.edu/display/129805
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Year Citation  Score
2023 Yin Q, Yang CH, Strelkova OS, Wu J, Sun Y, Gopalan S, Yang L, Dekker J, Fazzio TG, Li XZ, Gibcus J, Rando OJ. Revisiting chromatin packaging in mouse sperm. Genome Research. PMID 38129076 DOI: 10.1101/gr.277845.123  0.418
2023 Barshad G, Lewis JJ, Chivu AG, Abuhashem A, Krietenstein N, Rice EJ, Ma Y, Wang Z, Rando OJ, Hadjantonakis AK, Danko CG. RNA polymerase II dynamics shape enhancer-promoter interactions. Nature Genetics. PMID 37430091 DOI: 10.1038/s41588-023-01442-7  0.305
2020 Forey R, Barthe A, Tittel-Elmer M, Wery M, Barrault MB, Ducrot C, Seeber A, Krietenstein N, Szachnowski U, Skrzypczak M, Ginalski K, Rowicka M, Cobb JA, Rando OJ, Soutourina J, et al. A Role for the Mre11-Rad50-Xrs2 Complex in Gene Expression and Chromosome Organization. Molecular Cell. PMID 33278361 DOI: 10.1016/j.molcel.2020.11.010  0.38
2020 Ignatova VV, Kaiser S, Ho JSY, Bing X, Stolz P, Tan YX, Lee CL, Gay FPH, Lastres PR, Gerlini R, Rathkolb B, Aguilar-Pimentel A, Sanz-Moreno A, Klein-Rodewald T, Calzada-Wack J, ... ... Rando OJ, et al. METTL6 is a tRNA mC methyltransferase that regulates pluripotency and tumor cell growth. Science Advances. 6: eaaz4551. PMID 32923617 DOI: 10.1126/Sciadv.Aaz4551  0.334
2020 Kassem S, Ferrari P, Hughes AL, Soudet J, Rando OJ, Strubin M. Histone exchange is associated with activator function at transcribed promoters and with repression at histone loci. Science Advances. 6. PMID 32917590 DOI: 10.1126/Sciadv.Abb0333  0.509
2020 Krietenstein N, Rando OJ. Mesoscale organization of the chromatin fiber. Current Opinion in Genetics & Development. 61: 32-36. PMID 32305817 DOI: 10.1016/J.Gde.2020.02.022  0.434
2020 Ignatova VV, Stolz P, Kaiser S, Gustafsson TH, Lastres PR, Sanz-Moreno A, Cho YL, Amarie OV, Aguilar-Pimentel A, Klein-Rodewald T, Calzada-Wack J, Becker L, Marschall S, Kraiger M, Garrett L, ... ... Rando OJ, et al. The rRNA mA methyltransferase METTL5 is involved in pluripotency and developmental programs. Genes & Development. PMID 32217665 DOI: 10.1101/Gad.333369.119  0.323
2020 Krietenstein N, Abraham S, Venev SV, Abdennur N, Gibcus J, Hsieh TS, Parsi KM, Yang L, Maehr R, Mirny LA, Dekker J, Rando OJ. Ultrastructural Details of Mammalian Chromosome Architecture. Molecular Cell. PMID 32213324 DOI: 10.1016/J.Molcel.2020.03.003  0.775
2020 Hsieh TS, Cattoglio C, Slobodyanyuk E, Hansen AS, Rando OJ, Tjian R, Darzacq X. Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding. Molecular Cell. PMID 32213323 DOI: 10.1016/J.Molcel.2020.03.002  0.787
2020 Boskovic A, Bing XY, Kaymak E, Rando OJ. Corrigendum: Control of noncoding RNA production and histone levels by a 5' tRNA fragment. Genes & Development. 34: 462. PMID 32122968 DOI: 10.1101/Gad.336958.120  0.363
2019 Boskovic A, Bing XY, Kaymak E, Rando OJ. Control of noncoding RNA production and histone levels by a 5' tRNA fragment. Genes & Development. PMID 31831626 DOI: 10.1101/Gad.332783.119  0.415
2019 Rando O. Direct Cyanine-dCTP Labeling of DNA for Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31371471 DOI: 10.1101/Pdb.Prot096453  0.3
2019 Rando O. T7 Linear Amplification of DNA (TLAD) for Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31371470 DOI: 10.1101/Pdb.Prot096412  0.301
2019 Hainer SJ, Bošković A, McCannell KN, Rando OJ, Fazzio TG. Profiling of Pluripotency Factors in Single Cells and Early Embryos. Cell. PMID 30955888 DOI: 10.1016/J.Cell.2019.03.014  0.342
2019 Hamdani O, Dhillon N, Hsieh TS, Fujita T, Ocampo J, Kirkland JG, Lawrimore J, Kobayashi TJ, Friedman B, Fulton D, Wu KY, Chereji RV, Oki M, Bloom K, Clark DJ, ... Rando OJ, et al. Transfer RNA Genes Affect Chromosome Structure and Function via Local Effects. Molecular and Cellular Biology. PMID 30718362 DOI: 10.1128/Mcb.00432-18  0.768
2018 Swygert SG, Kim S, Wu X, Fu T, Hsieh TH, Rando OJ, Eisenman RN, Shendure J, McKnight JN, Tsukiyama T. Condensin-Dependent Chromatin Compaction Represses Transcription Globally during Quiescence. Molecular Cell. PMID 30595435 DOI: 10.1016/J.Molcel.2018.11.020  0.513
2018 Bošković A, Rando OJ. Transgenerational Epigenetic Inheritance. Annual Review of Genetics. PMID 30160987 DOI: 10.1146/Annurev-Genet-120417-031404  0.359
2018 Conine CC, Sun F, Song L, Rivera-Pérez JA, Rando OJ. Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice. Developmental Cell. PMID 30057276 DOI: 10.1016/J.Devcel.2018.06.024  0.311
2017 Wang F, McCannell KN, Bošković A, Zhu X, Shin J, Yu J, Gallant J, Byron M, Lawrence JB, Zhu LJ, Jones SN, Rando OJ, Fazzio TG, Bach I. Rlim-Dependent and -Independent Pathways for X Chromosome Inactivation in Female ESCs. Cell Reports. 21: 3691-3699. PMID 29281819 DOI: 10.1016/J.Celrep.2017.12.004  0.324
2017 Chou HJ, Donnard E, Gustafsson HT, Garber M, Rando OJ. Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation. Molecular Cell. 68: 978-992.e4. PMID 29198561 DOI: 10.1016/J.Molcel.2017.11.002  0.433
2017 Ichikawa Y, Connelly CF, Appleboim A, Miller TC, Jacobi H, Abshiru NA, Chou HJ, Chen Y, Sharma U, Zheng Y, Thomas PM, Chen HV, Bajaj V, Müeller CW, Kelleher NL, ... ... Rando OJ, et al. A synthetic biology approach to probing nucleosome symmetry. Elife. 6. PMID 28895528 DOI: 10.7554/Elife.28836  0.484
2017 Jachowicz JW, Bing X, Pontabry J, Bošković A, Rando OJ, Torres-Padilla ME. LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo. Nature Genetics. PMID 28846101 DOI: 10.1097/Ogx.0000000000000534  0.422
2017 Sharma U, Rando OJ. Metabolic Inputs into the Epigenome. Cell Metabolism. 25: 544-558. PMID 28273477 DOI: 10.1016/J.Cmet.2017.02.003  0.392
2016 Hainer SJ, McCannell KN, Yu J, Ee LS, Zhu LJ, Rando OJ, Fazzio TG. DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells. Elife. 5. PMID 27849519 DOI: 10.7554/Elife.21964  0.431
2016 Hsieh TS, Fudenberg G, Goloborodko A, Rando OJ. Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome. Nature Methods. PMID 27723753 DOI: 10.1038/Nmeth.4025  0.777
2016 Wang F, Shin J, Shea JM, Yu J, Bošković A, Byron M, Zhu X, Shalek AK, Regev A, Lawrence JB, Torres EM, Zhu LJ, Rando OJ, Bach I. Regulation of X-linked gene expression during early mouse development by Rlim. Elife. 5. PMID 27642011 DOI: 10.7554/Elife.19127  0.331
2016 Vasseur P, Tonazzini S, Ziane R, Camasses A, Rando OJ, Radman-Livaja M. Dynamics of Nucleosome Positioning Maturation following Genomic Replication. Cell Reports. PMID 27568571 DOI: 10.1016/J.Celrep.2016.07.083  0.791
2016 Rando OJ. Intergenerational Transfer of Epigenetic Information in Sperm. Cold Spring Harbor Perspectives in Medicine. PMID 26801897 DOI: 10.1101/Cshperspect.A022988  0.351
2016 Sharma U, Conine CC, Shea JM, Boskovic A, Derr AG, Bing XY, Belleannee C, Kucukural A, Serra RW, Sun F, Song L, Carone BR, Ricci EP, Li XZ, Fauquier L, ... ... Rando OJ, et al. Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals. Science (New York, N.Y.). 351: 391-6. PMID 26721685 DOI: 10.1126/Science.Aad6780  0.343
2016 Hainer SJ, McCannell KN, Yu J, Ee L, Zhu LJ, Rando OJ, Fazzio TG. Author response: DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells Elife. DOI: 10.7554/Elife.21964.031  0.346
2016 Wang F, Shin J, Shea JM, Yu J, Bošković A, Byron M, Zhu X, Shalek AK, Regev A, Lawrence JB, Torres EM, Zhu LJ, Rando OJ, Bach I. Author response: Regulation of X-linked gene expression during early mouse development by Rlim Elife. DOI: 10.7554/Elife.19127.021  0.305
2015 Shea JM, Serra RW, Carone BR, Shulha HP, Kucukural A, Ziller MJ, Vallaster MP, Gu H, Tapper AR, Gardner PD, Meissner A, Garber M, Rando OJ. Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome. Developmental Cell. 35: 750-8. PMID 26702833 DOI: 10.1016/J.Devcel.2015.11.024  0.362
2015 Rege M, Subramanian V, Zhu C, Hsieh TS, Weiner A, Friedman N, Clauder-Münster S, Steinmetz LM, Rando OJ, Boyer LA, Peterson CL. Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis. Cell Reports. PMID 26586442 DOI: 10.1016/J.Celrep.2015.10.030  0.796
2015 Chen PB, Chen HV, Acharya D, Rando OJ, Fazzio TG. R loops regulate promoter-proximal chromatin architecture and cellular differentiation. Nature Structural & Molecular Biology. PMID 26551076 DOI: 10.1038/Nsmb.3122  0.431
2015 Friedman N, Rando OJ. Epigenomics and the structure of the living genome. Genome Research. 25: 1482-90. PMID 26430158 DOI: 10.1101/Gr.190165.115  0.39
2015 Hughes AL, Rando OJ. Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo. G3 (Bethesda, Md.). 5: 1889-97. PMID 26175451 DOI: 10.1534/G3.115.020271  0.396
2015 Hsieh TH, Weiner A, Lajoie B, Dekker J, Friedman N, Rando OJ. Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C. Cell. 162: 108-19. PMID 26119342 DOI: 10.1016/J.Cell.2015.05.048  0.477
2015 Weiner A, Hsieh TH, Appleboim A, Chen HV, Rahat A, Amit I, Rando OJ, Friedman N. High-resolution chromatin dynamics during a yeast stress response. Molecular Cell. 58: 371-86. PMID 25801168 DOI: 10.1016/J.Molcel.2015.02.002  0.514
2015 Hainer SJ, Gu W, Carone BR, Landry BD, Rando OJ, Mello CC, Fazzio TG. Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF. Genes & Development. 29: 362-78. PMID 25691467 DOI: 10.1101/Gad.253534.114  0.503
2014 Yildirim O, Hung JH, Cedeno RJ, Weng Z, Lengner CJ, Rando OJ. A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters. Plos Genetics. 10: e1004515. PMID 25102063 DOI: 10.1371/Journal.Pgen.1004515  0.489
2014 Carone BR, Hung JH, Hainer SJ, Chou MT, Carone DM, Weng Z, Fazzio TG, Rando OJ. High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm. Developmental Cell. 30: 11-22. PMID 24998598 DOI: 10.1016/J.Devcel.2014.05.024  0.508
2014 Hughes AL, Rando OJ. Mechanisms underlying nucleosome positioning in vivo. Annual Review of Biophysics. 43: 41-63. PMID 24702039 DOI: 10.1146/Annurev-Biophys-051013-023114  0.474
2014 Soares LM, Radman-Livaja M, Lin SG, Rando OJ, Buratowski S. Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns. Cell Reports. 6: 961-72. PMID 24613354 DOI: 10.1016/J.Celrep.2014.02.017  0.76
2013 Watanabe S, Radman-Livaja M, Rando OJ, Peterson CL. A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme. Science (New York, N.Y.). 340: 195-9. PMID 23580526 DOI: 10.1126/Science.1229758  0.777
2013 Möbius W, Osberg B, Tsankov AM, Rando OJ, Gerland U. Toward a unified physical model of nucleosome patterns flanking transcription start sites. Proceedings of the National Academy of Sciences of the United States of America. 110: 5719-24. PMID 23509245 DOI: 10.1073/Pnas.1214048110  0.451
2013 Chen HV, Rando OJ. Painting by numbers: increasing the parts list for chromatin domains. Molecular Cell. 49: 620-1. PMID 23438859 DOI: 10.1016/J.Molcel.2013.02.007  0.432
2013 Watanabe S, Radman-Livaja M, Rando OJ, Peterson CL. A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme Science. 340: 195-199. DOI: 10.1126/science.1229758  0.74
2012 Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, et al. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Research. 22: 1798-812. PMID 22955990 DOI: 10.1101/Gr.139105.112  0.416
2012 Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, Pleiss JA, Friedman N, Rando OJ. Systematic dissection of roles for chromatin regulators in a yeast stress response. Plos Biology. 10: e1001369. PMID 22912562 DOI: 10.1371/Journal.Pbio.1001369  0.521
2012 Hughes AL, Jin Y, Rando OJ, Struhl K. A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern. Molecular Cell. 48: 5-15. PMID 22885008 DOI: 10.1016/J.Molcel.2012.07.003  0.461
2012 Radman-Livaja M, Quan TK, Valenzuela L, Armstrong JA, van Welsem T, Kim T, Lee LJ, Buratowski S, van Leeuwen F, Rando OJ, Hartzog GA. A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast. Plos Genetics. 8: e1002811. PMID 22807688 DOI: 10.1371/Journal.Pgen.1002811  0.783
2012 Carone BR, Rando OJ. Rewriting the epigenome. Cell. 149: 1422-3. PMID 22726428 DOI: 10.1016/J.Cell.2012.06.008  0.433
2012 Fazzio TG, Rando OJ. NURDs are required for diversity. The Embo Journal. 31: 3036-7. PMID 22580827 DOI: 10.1038/Emboj.2012.137  0.392
2012 Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kommajosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, Rando OJ, Nusbaum C, Niki H, Milos P, Weng Z, et al. Genome-wide identification and characterization of replication origins by deep sequencing. Genome Biology. 13: R27. PMID 22531001 DOI: 10.1186/Gb-2012-13-4-R27  0.411
2012 Rando OJ. Combinatorial complexity in chromatin structure and function: revisiting the histone code. Current Opinion in Genetics & Development. 22: 148-55. PMID 22440480 DOI: 10.1016/J.Gde.2012.02.013  0.491
2012 Rando OJ, Winston F. Chromatin and transcription in yeast. Genetics. 190: 351-87. PMID 22345607 DOI: 10.1534/Genetics.111.132266  0.482
2011 Yildirim O, Li R, Hung JH, Chen PB, Dong X, Ee LS, Weng Z, Rando OJ, Fazzio TG. Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells. Cell. 147: 1498-510. PMID 22196727 DOI: 10.1016/J.Cell.2011.11.054  0.441
2011 Sikorski TW, Ficarro SB, Holik J, Kim T, Rando OJ, Marto JA, Buratowski S. Sub1 and RPA associate with RNA polymerase II at different stages of transcription. Molecular Cell. 44: 397-409. PMID 22055186 DOI: 10.1016/J.Molcel.2011.09.013  0.384
2011 Tsankov A, Yanagisawa Y, Rhind N, Regev A, Rando OJ. Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Research. 21: 1851-62. PMID 21914852 DOI: 10.1101/Gr.122267.111  0.467
2011 Rando OJ. Genome-wide measurement of histone H3 replacement dynamics in yeast. Methods in Molecular Biology (Clifton, N.J.). 759: 41-60. PMID 21863480 DOI: 10.1007/978-1-61779-173-4_3  0.509
2011 Radman-Livaja M, Verzijlbergen KF, Weiner A, van Welsem T, Friedman N, Rando OJ, van Leeuwen F. Patterns and mechanisms of ancestral histone protein inheritance in budding yeast. Plos Biology. 9: e1001075. PMID 21666805 DOI: 10.1371/Journal.Pbio.1001075  0.796
2011 Radman-Livaja M, Ruben G, Weiner A, Friedman N, Kamakaka R, Rando OJ. Dynamics of Sir3 spreading in budding yeast: secondary recruitment sites and euchromatic localization. The Embo Journal. 30: 1012-26. PMID 21336256 DOI: 10.1038/Emboj.2011.30  0.765
2011 Papamichos-Chronakis M, Watanabe S, Rando OJ, Peterson CL. Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity Cell. 144: 200-213. PMID 21241891 DOI: 10.1016/J.Cell.2010.12.021  0.492
2011 Ivanovska I, Jacques PÉ, Rando OJ, Robert F, Winston F. Control of chromatin structure by spt6: different consequences in coding and regulatory regions. Molecular and Cellular Biology. 31: 531-41. PMID 21098123 DOI: 10.1128/Mcb.01068-10  0.459
2011 Lopes da Rosa J, Holik J, Green EM, Rando OJ, Kaufman PD. Overlapping regulation of CenH3 localization and histone H3 turnover by CAF-1 and HIR proteins in Saccharomyces cerevisiae. Genetics. 187: 9-19. PMID 20944015 DOI: 10.1534/Genetics.110.123117  0.494
2010 Rando OJ. Genome-wide mapping of nucleosomes in yeast. Methods in Enzymology. 470: 105-18. PMID 20946808 DOI: 10.1016/S0076-6879(10)70005-7  0.465
2010 Kim TS, Liu CL, Yassour M, Holik J, Friedman N, Buratowski S, Rando OJ. RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast. Genome Biology. 11: R75. PMID 20637075 DOI: 10.1186/Gb-2010-11-7-R75  0.385
2010 Tsankov AM, Thompson DA, Socha A, Regev A, Rando OJ. The role of nucleosome positioning in the evolution of gene regulation. Plos Biology. 8: e1000414. PMID 20625544 DOI: 10.1371/Journal.Pbio.1000414  0.494
2010 Jensen JD, Rando OJ. Recent evidence for pervasive adaptation targeting gene expression attributable to population size change. Proceedings of the National Academy of Sciences of the United States of America. 107: E109-10; author repl. PMID 20566840 DOI: 10.1073/Pnas.1004391107  0.33
2010 Kaufman PD, Rando OJ. Chromatin as a potential carrier of heritable information. Current Opinion in Cell Biology. 22: 284-90. PMID 20299197 DOI: 10.1016/J.Ceb.2010.02.002  0.479
2010 Radman-Livaja M, Liu CL, Friedman N, Schreiber SL, Rando OJ. Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast. Plos Genetics. 6: e1000837. PMID 20140185 DOI: 10.1371/Journal.Pgen.1000837  0.78
2010 Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N. High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Research. 20: 90-100. PMID 19846608 DOI: 10.1101/Gr.098509.109  0.502
2010 Radman-Livaja M, Rando OJ. Nucleosome positioning: how is it established, and why does it matter? Developmental Biology. 339: 258-66. PMID 19527704 DOI: 10.1016/J.Ydbio.2009.06.012  0.765
2010 Radman-Livaja M, Liu CL, Friedman N, Schreiber SL, Rando OJ. Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast Plos Genetics. 6. DOI: 10.1371/journal.pgen.1000837  0.719
2009 Hughes A, Rando OJ. Chromatin 'programming' by sequence--is there more to the nucleosome code than %GC? Journal of Biology. 8: 96. PMID 20067596 DOI: 10.1186/Jbiol207  0.39
2009 Rando OJ, Chang HY. Genome-wide views of chromatin structure. Annual Review of Biochemistry. 78: 245-71. PMID 19317649 DOI: 10.1146/Annurev.Biochem.78.071107.134639  0.51
2008 Kaplan T, Liu CL, Erkmann JA, Holik J, Grunstein M, Kaufman PD, Friedman N, Rando OJ. Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast. Plos Genetics. 4: e1000270. PMID 19023413 DOI: 10.1371/Journal.Pgen.1000270  0.463
2008 Chechik G, Oh E, Rando O, Weissman J, Regev A, Koller D. Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. Nature Biotechnology. 26: 1251-9. PMID 18953355 DOI: 10.1038/Nbt.1499  0.33
2008 Jeddeloh JA, Greally JM, Rando OJ. Reduced-representation methylation mapping. Genome Biology. 9: 231. PMID 18771577 DOI: 10.1186/Gb-2008-9-8-231  0.411
2008 Rando O. A biologist despairs over the difficulty of demonstrating heritability of chromatin states. Nature. 454: 141. PMID 18615034 DOI: 10.1038/454141E  0.351
2008 Au WC, Crisp MJ, DeLuca SZ, Rando OJ, Basrai MA. Altered dosage and mislocalization of histone H3 and Cse4p lead to chromosome loss in Saccharomyces cerevisiae. Genetics. 179: 263-75. PMID 18458100 DOI: 10.1534/Genetics.108.088518  0.439
2008 Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD. Histone Variant H2A.Z Marks the 5′ Ends of Both Active and Inactive Genes in Euchromatin (DOI:10.1016/j.cell.2005.10.002) Cell. 134: 188. DOI: 10.1016/j.cell.2008.06.046  0.332
2007 Whitehouse I, Rando OJ, Delrow J, Tsukiyama T. Chromatin remodelling at promoters suppresses antisense transcription. Nature. 450: 1031-5. PMID 18075583 DOI: 10.1038/Nature06391  0.526
2007 Dennis JH, Fan HY, Reynolds SM, Yuan G, Meldrim JC, Richter DJ, Peterson DG, Rando OJ, Noble WS, Kingston RE. Independent and complementary methods for large-scale structural analysis of mammalian chromatin. Genome Research. 17: 928-39. PMID 17568008 DOI: 10.1101/Gr.5636607  0.469
2007 Rando OJ, Ahmad K. Rules and regulation in the primary structure of chromatin. Current Opinion in Cell Biology. 19: 250-6. PMID 17466507 DOI: 10.1016/J.Ceb.2007.04.006  0.525
2007 Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. Dynamics of replication-independent histone turnover in budding yeast. Science (New York, N.Y.). 315: 1405-8. PMID 17347438 DOI: 10.1126/Science.1134053  0.518
2007 Rando OJ. Global patterns of histone modifications. Current Opinion in Genetics & Development. 17: 94-9. PMID 17317148 DOI: 10.1016/J.Gde.2007.02.006  0.52
2007 Rando OJ. Chromatin structure in the genomics era. Trends in Genetics : Tig. 23: 67-73. PMID 17188397 DOI: 10.1016/J.Tig.2006.12.002  0.456
2006 Kim M, Vasiljeva L, Rando OJ, Zhelkovsky A, Moore C, Buratowski S. Distinct pathways for snoRNA and mRNA termination. Molecular Cell. 24: 723-34. PMID 17157255 DOI: 10.1016/J.Molcel.2006.11.011  0.352
2006 Rando OJ, Paulsson J. Noisy silencing of chromatin. Developmental Cell. 11: 134-6. PMID 16890152 DOI: 10.1016/J.Devcel.2006.07.012  0.444
2005 Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD. Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin. Cell. 123: 233-48. PMID 16239142 DOI: 10.1016/J.Cell.2005.10.002  0.488
2005 Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ. Single-nucleosome mapping of histone modifications in S. cerevisiae. Plos Biology. 3: e328. PMID 16122352 DOI: 10.1371/Journal.Pbio.0030328  0.496
2005 Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ. Genome-scale identification of nucleosome positions in S. cerevisiae. Science (New York, N.Y.). 309: 626-30. PMID 15961632 DOI: 10.1126/Science.1112178  0.5
2005 Casolari JM, Brown CR, Drubin DA, Rando OJ, Silver PA. Developmentally induced changes in transcriptional program alter spatial organization across chromosomes. Genes & Development. 19: 1188-98. PMID 15905407 DOI: 10.1101/Gad.1307205  0.419
2005 Dion MF, Altschuler SJ, Wu LF, Rando OJ. Genomic characterization reveals a simple histone H4 acetylation code. Proceedings of the National Academy of Sciences of the United States of America. 102: 5501-6. PMID 15795371 DOI: 10.1073/Pnas.0500136102  0.486
2004 Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, Greenblatt JF, Buratowski S. The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II. Nature. 432: 517-22. PMID 15565157 DOI: 10.1038/Nature03041  0.336
2003 Rando OJ, Chi TH, Crabtree GR. Second messenger control of chromatin remodeling. Nature Structural Biology. 10: 81-3. PMID 12555081 DOI: 10.1038/Nsb0203-81  0.59
2002 Diehn M, Alizadeh AA, Rando OJ, Liu CL, Stankunas K, Botstein D, Crabtree GR, Brown PO. Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation. Proceedings of the National Academy of Sciences of the United States of America. 99: 11796-801. PMID 12195013 DOI: 10.1073/Pnas.092284399  0.714
2002 Rando OJ, Zhao K, Janmey P, Crabtree GR. Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex. Proceedings of the National Academy of Sciences of the United States of America. 99: 2824-9. PMID 11880634 DOI: 10.1073/Pnas.032662899  0.633
2000 Rando OJ, Zhao K, Crabtree GR. Searching for a function for nuclear actin. Trends in Cell Biology. 10: 92-7. PMID 10675902 DOI: 10.1016/S0962-8924(99)01713-4  0.643
1998 Zhao K, Wang W, Rando OJ, Xue Y, Swiderek K, Kuo A, Crabtree GR. Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling. Cell. 95: 625-36. PMID 9845365 DOI: 10.1016/S0092-8674(00)81633-5  0.697
Low-probability matches (unlikely to be authored by this person)
2021 Galan C, Serra RW, Sun F, Rinaldi VD, Conine CC, Rando OJ. Stability of the cytosine methylome during post-testicular sperm maturation in mouse. Plos Genetics. 17: e1009416. PMID 33661909 DOI: 10.1371/journal.pgen.1009416  0.296
2019 Rando O. Indirect Aminoallyl-dUTP Labeling of RNA for Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31262959 DOI: 10.1101/Pdb.Prot096446  0.292
2010 Carone BR, Fauquier L, Habib N, Shea JM, Hart CE, Li R, Bock C, Li C, Gu H, Zamore PD, Meissner A, Weng Z, Hofmann HA, Friedman N, Rando OJ. Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals. Cell. 143: 1084-96. PMID 21183072 DOI: 10.1016/J.Cell.2010.12.008  0.292
2007 Rando O. Oliver Rando: taking chromatin analysis to the genomic scale. Interview by Ruth Williams. The Journal of Cell Biology. 177: 948-9. PMID 17576793 DOI: 10.1083/jcb.1776pi  0.291
2020 Rinaldi VD, Donnard E, Gellatly K, Rasmussen M, Kucukural A, Yukselen O, Garber M, Sharma U, Rando OJ. An atlas of cell types in the mouse epididymis and vas deferens. Elife. 9. PMID 32729827 DOI: 10.7554/Elife.55474  0.282
2018 Sharma U, Sun F, Conine CC, Reichholf B, Kukreja S, Herzog VA, Ameres SL, Rando OJ. Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm. Developmental Cell. PMID 30057273 DOI: 10.1016/J.Devcel.2018.06.023  0.281
2007 Rando OJ, Verstrepen KJ. Timescales of genetic and epigenetic inheritance. Cell. 128: 655-68. PMID 17320504 DOI: 10.1016/J.Cell.2007.01.023  0.281
1994 Palombella VJ, Rando OJ, Goldberg AL, Maniatis T. The ubiquitinproteasome pathway is required for processing the NF-κB1 precursor protein and the activation of NF-κB Cell. 78: 773-785. PMID 8087845 DOI: 10.1016/S0092-8674(94)90482-0  0.281
2019 Rando O. Indirect Labeling of DNA for Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31371472 DOI: 10.1101/Pdb.Prot096461  0.279
2019 Rando O. Hybridization to Homemade Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31481490 DOI: 10.1101/Pdb.Prot096487  0.278
2019 Rando O. Amplification of RNA for Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31262957 DOI: 10.1101/Pdb.Prot096420  0.277
2008 Rando OJ. Evolution in a test tube: the hatchet before the scalpel. Cell. 135: 789-91. PMID 19041741 DOI: 10.1016/J.Cell.2008.11.005  0.273
2009 Rowat AC, Bird JC, Agresti JJ, Rando OJ, Weitz DA. Tracking lineages of single cells in lines using a microfluidic device. Proceedings of the National Academy of Sciences of the United States of America. 106: 18149-54. PMID 19826080 DOI: 10.1073/Pnas.0903163106  0.271
2019 Rando O. Direct Cyanine-dUTP Labeling of RNA for Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31262958 DOI: 10.1101/Pdb.Prot096438  0.27
2014 Sharma U, Rando OJ. Father-son chats: inheriting stress through sperm RNA. Cell Metabolism. 19: 894-5. PMID 24896534 DOI: 10.1016/J.Cmet.2014.05.015  0.266
2018 Chan IL, Rando OJ, Conine CC. Effects of Larval Density on Gene Regulation inDuring Routine L1 Synchronization. G3 (Bethesda, Md.). PMID 29602810 DOI: 10.1534/G3.118.200056  0.262
2019 Rando O. Round A/Round B Amplification of DNA for Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31371469 DOI: 10.1101/Pdb.Prot096404  0.261
2012 Rando OJ. Daddy issues: paternal effects on phenotype. Cell. 151: 702-8. PMID 23141533 DOI: 10.1016/J.Cell.2012.10.020  0.259
2019 Rando O. Nucleic Acid Platform Technologies. Cold Spring Harbor Protocols. 2019. PMID 31167924 DOI: 10.1101/Pdb.Top096388  0.258
2017 Ichikawa Y, Connelly CF, Appleboim A, Miller TC, Jacobi H, Abshiru NA, Chou H, Chen Y, Sharma U, Zheng Y, Thomas PM, Chen HV, Bajaj V, Müller CW, Kelleher NL, ... ... Rando OJ, et al. Author response: A synthetic biology approach to probing nucleosome symmetry Elife. DOI: 10.7554/Elife.28836.019  0.257
2021 Akgol Oksuz B, Yang L, Abraham S, Venev SV, Krietenstein N, Parsi KM, Ozadam H, Oomen ME, Nand A, Mao H, Genga RMJ, Maehr R, Rando OJ, Mirny LA, Gibcus JH, et al. Systematic evaluation of chromosome conformation capture assays. Nature Methods. PMID 34480151 DOI: 10.1038/s41592-021-01248-7  0.256
2019 Rando O. Blocking Polylysines on Homemade Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31481489 DOI: 10.1101/Pdb.Prot096479  0.246
2019 Conine CC, Sun F, Song L, Rivera-Pérez JA, Rando OJ. MicroRNAs Absent in Caput Sperm Are Required for Normal Embryonic Development. Developmental Cell. 50: 7-8. PMID 31265813 DOI: 10.1016/J.Devcel.2019.06.007  0.23
2019 Galan C, Krykbaeva M, Rando OJ. Early life lessons: The lasting effects of germline epigenetic information on organismal development. Molecular Metabolism. PMID 31974037 DOI: 10.1016/J.Molmet.2019.12.004  0.229
2022 Krietenstein N, Rando OJ. Mammalian Micro-C-XL. Methods in Molecular Biology (Clifton, N.J.). 2458: 321-332. PMID 35103975 DOI: 10.1007/978-1-0716-2140-0_17  0.223
2019 Cauceglia JW, Nelson AC, Rubinstein ND, Kukreja S, Sasso LN, Beaufort JA, Rando OJ, Potts WK. Transitions in paternal social status predict patterns of offspring growth and metabolic transcription. Molecular Ecology. PMID 31885115 DOI: 10.1111/Mec.15346  0.222
2020 Rinaldi VD, Donnard E, Gellatly K, Rasmussen M, Kucukural A, Yukselen O, Garber M, Sharma U, Rando OJ. Author response: An atlas of cell types in the mouse epididymis and vas deferens Elife. DOI: 10.7554/Elife.55474.Sa2  0.222
2018 Stanford KI, Rasmussen M, Baer LA, Lehnig AC, Rowland LA, White JD, So K, De Sousa-Coehlo AL, Hirshman MF, Patti ME, Rando OJ, Goodyear LJ. Paternal Exercise Improves Glucose Metabolism in Adult Offspring. Diabetes. PMID 30344184 DOI: 10.2337/Db18-0667  0.215
2015 Rando OJ, Simmons RA. I'm eating for two: parental dietary effects on offspring metabolism. Cell. 161: 93-105. PMID 25815988 DOI: 10.1016/J.Cell.2015.02.021  0.206
2022 Tourzani DA, Yin Q, Jackson EA, Rando OJ, Visconti PE, Gervasi MG. Sperm Energy Restriction and Recovery (SER) Alters Epigenetic Marks during the First Cell Cycle of Development in Mice. International Journal of Molecular Sciences. 24. PMID 36614081 DOI: 10.3390/ijms24010640  0.205
2012 Schug TT, Erlebacher A, Leibowitz S, Ma L, Muglia LJ, Rando OJ, Rogers JM, Romero R, vom Saal FS, Wise DL. Fetal programming and environmental exposures: implications for prenatal care and preterm birth. Annals of the New York Academy of Sciences. 1276: 37-46. PMID 23278645 DOI: 10.1111/Nyas.12003  0.198
2005 Kim M, Krogan NJ, Vasiljeva L, Rando OJ, Nedea E, Greenblatt JF, Buratowski S. Erratum: The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II Nature. 433: 661-661. DOI: 10.1038/nature03307  0.198
2015 Zhao-Shea R, DeGroot SR, Liu L, Vallaster M, Pang X, Su Q, Gao G, Rando OJ, Martin GE, George O, Gardner PD, Tapper AR. Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal. Nature Communications. 6: 6770. PMID 25898242 DOI: 10.1038/Ncomms7770  0.194
2017 Vallaster MP, Kukreja S, Bing XY, Ngolab J, Zhao-Shea R, Gardner PD, Tapper AR, Rando OJ. Paternal nicotine exposure alters hepatic xenobiotic metabolism in offspring. Elife. 6. PMID 28196335 DOI: 10.7554/Elife.24771  0.194
2023 RInaldi V, Messemer K, Desevin K, Sun F, Berry BC, Kukreja S, Tapper AR, Wagers AJ, Rando OJ. Evidence for RNA or protein transport from somatic tissues to the male reproductive tract in mouse. Elife. 12. PMID 36971355 DOI: 10.7554/eLife.77733  0.18
2021 Wang F, Gervasi MG, Bošković A, Sun F, Rinaldi VD, Yu J, Wallinghurst MC, Tourzani DA, Mager J, Zhu LJ, Rando OJ, Visconti PE, Strittmatter L, Bach I. Deficient spermiogenesis in mice lacking . Elife. 10. PMID 33620316 DOI: 10.7554/eLife.63556  0.18
2017 Vallaster MP, Kukreja S, Bing XY, Ngolab J, Zhao-Shea R, Gardner PD, Tapper AR, Rando OJ. Author response: Paternal nicotine exposure alters hepatic xenobiotic metabolism in offspring Elife. DOI: 10.7554/Elife.24771.027  0.172
2021 Conine CC, Rando OJ. Soma-to-germline RNA communication. Nature Reviews. Genetics. PMID 34545247 DOI: 10.1038/s41576-021-00412-1  0.149
2015 Rando OJ. Ghosts in the genome: How one generation's experience can affect the next Scientist. 29.  0.14
2009 Rando O. Evolution for dummies … and molecular biologists, by Nicholas H. Barton, Derek E. G. Briggs, Jonathan A. Eisen, David B. Goldstein, and Nipam H. Patel (2007), Cold Spring Harbor Laboratory Press. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 23: 5-6. PMID 29436873 DOI: 10.1096/fj.09-0103ufm  0.074
2020 Conine CC, Sun F, Song L, Rivera-Pérez JA, Rando OJ. Sperm Head Preparation and Genetic Background Affect Caput Sperm ICSI Embryo Viability: Cauda-Enriched miRNAs Only Essential in Specific Conditions. Developmental Cell. 55: 677-678. PMID 33352142 DOI: 10.1016/j.devcel.2020.11.021  0.066
2023 Maitin-Shepard M, Werner EF, Feig LA, Chavarro JE, Mumford SL, Wylie B, Rando OJ, Gaskins AJ, Sakkas D, Arora M, Kudesia R, Lujan ME, Braun J, Mozaffarian D. Report of a Meeting Food, Nutrition, and Fertility: From Soil to Fork. The American Journal of Clinical Nutrition. PMID 38101699 DOI: 10.1016/j.ajcnut.2023.12.005  0.059
2019 Rando O. Printing Microarrays. Cold Spring Harbor Protocols. 2019. PMID 31481488 DOI: 10.1101/pdb.prot096396  0.033
2015 Zhao-Shea R, DeGroot SR, Liu L, Vallaster M, Pang X, Su Q, Gao G, Rando OJ, Martin GE, George O, Gardner PD, Tapper AR. Corrigendum: Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal. Nature Communications. 6: 7625. PMID 26133887 DOI: 10.1038/ncomms8625  0.018
2023 Kaymak E, Rando OJ. Staying together after the breakup: tRNA halves in extracellular fluids. Proceedings of the National Academy of Sciences of the United States of America. 120: e2300300120. PMID 36780520 DOI: 10.1073/pnas.2300300120  0.01
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