Joel R. Neilson, Ph.D. - Publications

2004 Stanford University, Palo Alto, CA 

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Xu Y, Chaudhury A, Zhang M, Savoldo B, Metelitsa LS, Rodgers J, Yustein JT, Neilson JR, Dotti G. Glycolysis determines dichotomous regulation of T cell subsets in hypoxia. The Journal of Clinical Investigation. PMID 27294526 DOI: 10.1172/JCI85834  0.64
2016 Domingues RG, Lago-Baldaia I, Pereira-Castro I, Fachini JM, Oliveira L, Drpic D, Lopes N, Henriques T, Neilson JR, Carmo AM, Moreira A. CD5 expression is regulated during human T-cell activation by alternative polyadenylation, PTBP1 and miR-204. European Journal of Immunology. PMID 27005442 DOI: 10.1002/eji.201545663  0.64
2016 Chaudhury A, Neilson JR. Use of the pBUTR Reporter System for Scalable Analysis of 3' UTR-Mediated Gene Regulation. Methods in Molecular Biology (Clifton, N.J.). 1358: 109-28. PMID 26463380 DOI: 10.1007/978-1-4939-3067-8_7  0.64
2015 Hsu TY, Simon LM, Neill NJ, Marcotte R, Sayad A, Bland CS, Echeverria GV, Sun T, Kurley SJ, Tyagi S, Karlin KL, Dominguez-Vidaña R, Hartman JD, Renwick A, Scorsone K, ... ... Neilson JR, et al. The spliceosome is a therapeutic vulnerability in MYC-driven cancer. Nature. PMID 26331541 DOI: 10.1038/nature14985  0.64
2015 Tan Y, Deng J, Neilson JR. RAX2: a genome-wide detection method of condition-associated transcription variation. Nucleic Acids Research. PMID 25953852 DOI: 10.1093/nar/gkv411  0.64
2015 Tan YD, Chandler AM, Chaudhury A, Neilson JR. A powerful statistical approach for large-scale differential transcription analysis. Plos One. 10: e0123658. PMID 25894390 DOI: 10.1371/journal.pone.0123658  0.64
2014 Xia Z, Donehower LA, Cooper TA, Neilson JR, Wheeler DA, Wagner EJ, Li W. Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types. Nature Communications. 5: 5274. PMID 25409906 DOI: 10.1038/ncomms6274  0.64
2014 Chiang DY, Kongchan N, Beavers DL, Alsina KM, Voigt N, Neilson JR, Jakob H, Martin JF, Dobrev D, Wehrens XH, Li N. Loss of microRNA-106b-25 cluster promotes atrial fibrillation by enhancing ryanodine receptor type-2 expression and calcium release. Circulation. Arrhythmia and Electrophysiology. 7: 1214-22. PMID 25389315 DOI: 10.1161/CIRCEP.114.001973  0.64
2014 Chaudhury A, Kongchan N, Gengler JP, Mohanty V, Christiansen AE, Fachini JM, Martin JF, Neilson JR. A piggyBac-based reporter system for scalable in vitro and in vivo analysis of 3' untranslated region-mediated gene regulation. Nucleic Acids Research. 42: e86. PMID 24753411 DOI: 10.1093/nar/gku258  0.64
2013 Zhao P, Damerow MS, Stern P, Liu AH, Sweet-Cordero A, Siziopikou K, Neilson JR, Sharp PA, Cheng C. CD44 promotes Kras-dependent lung adenocarcinoma. Oncogene. 32: 5186-90. PMID 23208496 DOI: 10.1038/onc.2012.542  0.64
2010 Neilson JR, Sandberg R. Heterogeneity in mammalian RNA 3' end formation. Experimental Cell Research. 316: 1357-64. PMID 20211174 DOI: 10.1016/j.yexcr.2010.02.040  0.64
2010 Edbauer D, Neilson JR, Foster KA, Wang CF, Seeburg DP, Batterton MN, Tada T, Dolan BM, Sharp PA, Sheng M. Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132. Neuron. 65: 373-84. PMID 20159450 DOI: 10.1016/j.neuron.2010.01.005  0.64
2010 Edbauer D, Neilson JR, Foster KA, Wang CF, Seeburg DP, Batterton MN, Tada T, Dolan BM, Sharp PA, Sheng M. Regulation of synaptic structure and function by FMRP-associated MicroRNAs miR-125b and miR-132 Neuron. 68: 161. DOI: 10.1016/j.neuron.2010.09.035  0.64
2009 Jones MR, Quinton LJ, Blahna MT, Neilson JR, Fu S, Ivanov AR, Wolf DA, Mizgerd JP. Zcchc11-dependent uridylation of microRNA directs cytokine expression. Nature Cell Biology. 11: 1157-63. PMID 19701194 DOI: 10.1038/ncb1931  0.64
2008 Neilson JR, Sharp PA. Small RNA regulators of gene expression. Cell. 134: 899-902. PMID 18805079 DOI: 10.1016/j.cell.2008.09.006  0.64
2008 Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB. Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites. Science (New York, N.Y.). 320: 1643-7. PMID 18566288 DOI: 10.1126/science.1155390  0.64
2007 Gallo EM, Winslow MM, Canté-Barrett K, Radermacher AN, Ho L, McGinnis L, Iritani B, Neilson JR, Crabtree GR. Calcineurin sets the bandwidth for discrimination of signals during thymocyte development. Nature. 450: 731-5. PMID 18046413 DOI: 10.1038/nature06305  0.64
2007 Wu H, Neilson JR, Kumar P, Manocha M, Shankar P, Sharp PA, Manjunath N. miRNA profiling of naïve, effector and memory CD8 T cells. Plos One. 2: e1020. PMID 17925868 DOI: 10.1371/journal.pone.0001020  0.64
2007 Ebert MS, Neilson JR, Sharp PA. MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells. Nature Methods. 4: 721-6. PMID 17694064 DOI: 10.1038/nmeth1079  0.64
2007 Neilson JR, Zheng GX, Burge CB, Sharp PA. Dynamic regulation of miRNA expression in ordered stages of cellular development. Genes & Development. 21: 578-89. PMID 17344418 DOI: 10.1101/gad.1522907  0.64
2006 Davé V, Childs T, Xu Y, Ikegami M, Besnard V, Maeda Y, Wert SE, Neilson JR, Crabtree GR, Whitsett JA. Calcineurin/Nfat signaling is required for perinatal lung maturation and function. The Journal of Clinical Investigation. 116: 2597-609. PMID 16998587 DOI: 10.1172/JCI27331  0.64
2006 Heit JJ, Apelqvist AA, Gu X, Winslow MM, Neilson JR, Crabtree GR, Kim SK. Calcineurin/NFAT signalling regulates pancreatic beta-cell growth and function. Nature. 443: 345-9. PMID 16988714 DOI: 10.1038/nature05097  0.64
2006 Arron JR, Winslow MM, Polleri A, Chang CP, Wu H, Gao X, Neilson JR, Chen L, Heit JJ, Kim SK, Yamasaki N, Miyakawa T, Francke U, Graef IA, Crabtree GR. NFAT dysregulation by increased dosage of DSCR1 and DYRK1A on chromosome 21. Nature. 441: 595-600. PMID 16554754 DOI: 10.1038/nature04678  0.64
2006 Winslow MM, Gallo EM, Neilson JR, Crabtree GR. The calcineurin phosphatase complex modulates immunogenic B cell responses. Immunity. 24: 141-52. PMID 16473827 DOI: 10.1016/j.immuni.2005.12.013  0.64
2005 Neilson JR, Sharp PA. Herpesviruses throw a curve ball: new insights into microRNA biogenesis and evolution. Nature Methods. 2: 252-4. PMID 15782215 DOI: 10.1038/nmeth0405-252  0.64
2004 Chang CP, Neilson JR, Bayle JH, Gestwicki JE, Kuo A, Stankunas K, Graef IA, Crabtree GR. A field of myocardial-endocardial NFAT signaling underlies heart valve morphogenesis. Cell. 118: 649-63. PMID 15339668 DOI: 10.1016/j.cell.2004.08.010  0.64
2004 Schaeffer PJ, Wende AR, Magee CJ, Neilson JR, Leone TC, Chen F, Kelly DP. Calcineurin and calcium/calmodulin-dependent protein kinase activate distinct metabolic gene regulatory programs in cardiac muscle. The Journal of Biological Chemistry. 279: 39593-603. PMID 15262994 DOI: 10.1074/jbc.M403649200  0.64
2004 Parsons SA, Millay DP, Wilkins BJ, Bueno OF, Tsika GL, Neilson JR, Liberatore CM, Yutzey KE, Crabtree GR, Tsika RW, Molkentin JD. Genetic loss of calcineurin blocks mechanical overload-induced skeletal muscle fiber type switching but not hypertrophy. The Journal of Biological Chemistry. 279: 26192-200. PMID 15082723 DOI: 10.1074/jbc.M313800200  0.64
2004 Chang CP, McDill BW, Neilson JR, Joist HE, Epstein JA, Crabtree GR, Chen F. Calcineurin is required in urinary tract mesenchyme for the development of the pyeloureteral peristaltic machinery. The Journal of Clinical Investigation. 113: 1051-8. PMID 15057312 DOI: 10.1172/JCI20049  0.64
2004 Neilson JR, Winslow MM, Hur EM, Crabtree GR. Calcineurin B1 is essential for positive but not negative selection during thymocyte development. Immunity. 20: 255-66. PMID 15030770 DOI: 10.1016/S1074-7613(04)00052-4  0.64
2003 Winslow MM, Neilson JR, Crabtree GR. Calcium signalling in lymphocytes. Current Opinion in Immunology. 15: 299-307. PMID 12787755 DOI: 10.1016/S0952-7915(03)00050-5  0.64
1999 Stankunas K, Graef IA, Neilson JR, Park SH, Crabtree GR. Signaling through calcium, calcineurin, and NF-AT in lymphocyte activation and development. Cold Spring Harbor Symposia On Quantitative Biology. 64: 505-16. PMID 11232327  0.64
1999 Graef IA, Mermelstein PG, Stankunas K, Neilson JR, Deisseroth K, Tsien RW, Crabtree GR. L-type calcium channels and GSK-3 regulate the activity of NF-ATc4 in hippocampal neurons. Nature. 401: 703-8. PMID 10537109 DOI: 10.1038/44378  0.68
1999 Neilson JR, John GC, Carr JK, Lewis P, Kreiss JK, Jackson S, Nduati RW, Mbori-Ngacha D, Panteleeff DD, Bodrug S, Giachetti C, Bott MA, Richardson BA, Bwayo J, Ndinya-Achola J, et al. Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya Journal of Virology. 73: 4393-4403. PMID 10196337  0.64
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