Yukiko Kikuchi, PhD - Related publications

Newcastle University Medical School 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Urban M, Cuzick A, Seager J, Wood V, Rutherford K, Venkatesh SY, Sahu J, Iyer SV, Khamari L, De Silva N, Martinez MC, Pedro H, Yates AD, Hammond-Kosack KE. PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions. Nucleic Acids Research. PMID 34788826 DOI: 10.1093/nar/gkab1037   
2021 Fu J, Zeng L, Zheng L, Bai Z, Li Z, Liu L. Comparative Transcriptomic Analyses of Antibiotic-Treated and Normally Reared Reveals a Possible Gut Self-Immunity Mechanism. Frontiers in Cell and Developmental Biology. 9: 647604. PMID 34621734 DOI: 10.3389/fcell.2021.647604   
2021 Mahdi LK, Miyauchi S, Uhlmann C, Garrido-Oter R, Langen G, Wawra S, Niu Y, Guan R, Robertson-Albertyn S, Bulgarelli D, Parker JE, Zuccaro A. The fungal root endophyte Serendipita vermifera displays inter-kingdom synergistic beneficial effects with the microbiota in Arabidopsis thaliana and barley. The Isme Journal. PMID 34686763 DOI: 10.1038/s41396-021-01138-y   
2021 Acevedo TS, Fricker GP, Garcia JR, Alcaide T, Berasategui A, Stoy KS, Gerardo NM. The Importance of Environmentally Acquired Bacterial Symbionts for the Squash Bug (), a Significant Agricultural Pest. Frontiers in Microbiology. 12: 719112. PMID 34671328 DOI: 10.3389/fmicb.2021.719112   
2021 Ott LC, Engelken M, Scott SM, McNeill EM, Mellata M. Model for Gut-Mediated Horizontal Transfer of Narrow- and Broad-Host-Range Plasmids. Msphere. 6: e0069821. PMID 34668756 DOI: 10.1128/mSphere.00698-21   
2021 Mao F, Liu K, Wong NK, Zhang X, Yi W, Xiang Z, Xiao S, Yu Z, Zhang Y. Virulence of Accentuates Apoptosis and Immune Rigor in the Oyster . Frontiers in Immunology. 12: 746017. PMID 34621277 DOI: 10.3389/fimmu.2021.746017   
2021 Hullahalli K, Waldor MK. Pathogen clonal expansion underlies multiorgan dissemination and organ-specific outcomes during murine systemic infection. Elife. 10. PMID 34636322 DOI: 10.7554/eLife.70910   
2021 Chen Y, Zhai W, Zhang K, Liu H, Zhu T, Su L, Bermudez L, Chen H, Guo A. Small RNA Profiling in Provides Insights Into Stress Adaptability. Frontiers in Microbiology. 12: 752537. PMID 34803973 DOI: 10.3389/fmicb.2021.752537   
2021 Robinson AJ, House GL, Morales DP, Kelliher JM, Gallegos-Graves V, LeBrun ES, Davenport KW, Palmieri F, Lohberger A, Bregnard D, Estoppey A, Buffi M, Paul C, Junier T, Hervé V, et al. Widespread bacterial diversity within the bacteriome of fungi. Communications Biology. 4: 1168. PMID 34621007 DOI: 10.1038/s42003-021-02693-y   
2021 McKenna CH, Asgari D, Crippen TL, Zheng L, Sherman RA, Tomberlin JK, Meisel RP, Tarone AM. Gene expression in Lucilia sericata (Diptera: Calliphoridae) larvae exposed to Pseudomonas aeruginosa and Acinetobacter baumannii identifies shared and microbe-specific induction of immune genes. Insect Molecular Biology. PMID 34613655 DOI: 10.1111/imb.12740   
2021 Yang J, Qin QM, de Figueiredo P. Automated, High-Throughput Detection of Bacterial Adherence to Host Cells. Journal of Visualized Experiments : Jove. PMID 34605819 DOI: 10.3791/62764   
2021 Mi S, Tang Y, Shi L, Liu X, Si J, Yao Y, Augustino SMA, Fang L, Yu Y. Protective Roles of Folic Acid in the Responses of Bovine Mammary Epithelial Cells to Different Virulent Strains. Biology. 10. PMID 34827157 DOI: 10.3390/biology10111164   
2021 Maan H, Gilhar O, Porat Z, Kolodkin-Gal I. Colonization of Roots Induces Multiple Biosynthetic Clusters for Antibiotic Production. Frontiers in Cellular and Infection Microbiology. 11: 722778. PMID 34557426 DOI: 10.3389/fcimb.2021.722778   
2021 Huang Y, Wang HC, Cai LT, Li W, Pan D, Xiang L, Su X, Li Z, Adil MF, Shamsi IH. Phyllospheric Microbial Composition and Diversity of the Tobacco Leaves Infected by . Frontiers in Microbiology. 12: 699699. PMID 34721315 DOI: 10.3389/fmicb.2021.699699   
2021 Hoff G, Arguelles Arias A, Boubsi F, Pršić J, Meyer T, Ibrahim HMM, Steels S, Luzuriaga P, Legras A, Franzil L, Lequart-Pillon M, Rayon C, Osorio V, de Pauw E, Lara Y, et al. Surfactin Stimulated by Pectin Molecular Patterns and Root Exudates Acts as a Key Driver of the -Plant Mutualistic Interaction. Mbio. e0177421. PMID 34724831 DOI: 10.1128/mBio.01774-21   
2021 Pimenta AI, Bernardes N, Alves MM, Mil-Homens D, Fialho AM. Burkholderia cenocepacia transcriptome during the early contacts with giant plasma membrane vesicles derived from live bronchial epithelial cells. Scientific Reports. 11: 5624. PMID 33707642 DOI: 10.1038/s41598-021-85222-5   
2021 Zhang Z, Li J, Zhang Z, Liu Y, Wei Y. Tomato Endophytic Bacteria Composition and Mechanism of Suppressiveness of Wilt Disease (). Frontiers in Microbiology. 12: 731764. PMID 34721330 DOI: 10.3389/fmicb.2021.731764   
2021 Go WZ, Chin KL, H'ng PS, Wong MY, Luqman CA, Surendran A, Tan GH, Lee CL, Khoo PS, Kong WJ. Virulence of Isolates Causing White Root Rot Disease on Rubber Trees () in Malaysia. Plants (Basel, Switzerland). 10. PMID 34685932 DOI: 10.3390/plants10102123   
2021 Galindo-González L, Hwang SF, Strelkov SE. Candidate Effectors of Pathotype 5X During Infection of Two Genotypes. Frontiers in Microbiology. 12: 742268. PMID 34803960 DOI: 10.3389/fmicb.2021.742268   
2021 Iyer S, Das C. The unity of opposites: Strategic interplay between bacterial effectors to regulate cellular homeostasis. The Journal of Biological Chemistry. 101340. PMID 34695417 DOI: 10.1016/j.jbc.2021.101340   
2021 Shealy NG, Yoo W, Byndloss MX. Colonization resistance: metabolic warfare as a strategy against pathogenic Enterobacteriaceae. Current Opinion in Microbiology. 64: 82-90. PMID 34688039 DOI: 10.1016/j.mib.2021.09.014   
2021 Ahmed MFE, Alssahen M, Lämmler C, Köhler B, Metzner M, Plötz M, Abdulmawjood A. Identification of Trueperella bernardiae isolated from peking ducks (Anas platyrhynchos domesticus) by phenotypical and genotypical investigations and by a newly developed loop-mediated isothermal amplification (LAMP) assay. Folia Microbiologica. PMID 34780047 DOI: 10.1007/s12223-021-00927-4   
2021 Bienvenu A, Martinez E, Bonazzi M. Undercover Agents of Infection: The Stealth Strategies of T4SS-Equipped Bacterial Pathogens. Toxins. 13. PMID 34679006 DOI: 10.3390/toxins13100713   
2021 Barnes AMT, Frank KL, Dale JL, Manias DA, Powers JL, Dunny GM. colonizes and forms persistent biofilm microcolonies on undamaged endothelial surfaces in a rabbit endovascular infection model. Fems Microbes. 2: xtab014. PMID 34734186 DOI: 10.1093/femsmc/xtab014   
2021 Keen EC, Choi J, Wallace MA, Azar M, Mejia-Chew CR, Mehta SB, Bailey TC, Caverly LJ, Burnham CD, Dantas G. Comparative Genomics of Mycobacterium avium Complex Reveals Signatures of Environment-Specific Adaptation and Community Acquisition. Msystems. e0119421. PMID 34665012 DOI: 10.1128/mSystems.01194-21   
2021 Li L, Huang Y, Shi Y, Chai AL, Xie X, Li B. First Report of Bacterial Leaf Spot of Coriander Caused by Pseudomonas syringae pv. coriandricola in China. Plant Disease. PMID 34705488 DOI: 10.1094/PDIS-09-21-1901-PDN   
2021 Jung JY, Han SS, Kim ZH, Kim MH, Kang HK, Jin HM, Lee MH. In-Vitro Characterization of Growth Inhibition against the Gut Pathogen of Potentially Probiotic Lactic Acid Bacteria Strains Isolated from Fermented Products. Microorganisms. 9. PMID 34683462 DOI: 10.3390/microorganisms9102141   
2021 Wagner Mackenzie B, Zoing M, Clow F, Waite DW, Radcliff FJ, Taylor MW, Biswas K, Douglas RG. Characterising clinical Staphylococcus aureus isolates from the sinuses of patients with chronic rhinosinusitis. Scientific Reports. 11: 21940. PMID 34753993 DOI: 10.1038/s41598-021-01297-0   
2021 Butković A, González R, Rivarez MPS, Elena SF. A genome-wide association study identifies genes that contribute to differences in the outcome of infection with two strains that differ in their evolutionary history and degree of host specialization. Virus Evolution. 7: veab063. PMID 34532063 DOI: 10.1093/ve/veab063   
2021 Peng K, Wang Q, Yin Y, Li Y, Liu Y, Wang M, Qin S, Wang Z, Li R. Plasmids Shape the Current Prevalence of among Klebsiella pneumoniae in Food Production Chains. Msystems. e0070221. PMID 34609171 DOI: 10.1128/mSystems.00702-21   
2021 Hiramatsu Y, Nishida T, Nugraha DK, Sugihara F, Horiguchi Y. Melanin Produced by Confers a Survival Advantage to the Bacterium during Host Infection. Msphere. e0081921. PMID 34643424 DOI: 10.1128/mSphere.00819-21   
2021 Bourdin T, Monnier A, Benoit MÈ, Bédard E, Prévost M, Quach C, Déziel E, Constant P. A High-Throughput Short Sequence Typing Scheme for Pure Culture and Environmental DNA. Applied and Environmental Microbiology. AEM0139921. PMID 34586910 DOI: 10.1128/AEM.01399-21   
2021 Kim Y, Ko JY, Yang WH. Remodeling of host glycoproteins during bacterial infection. Bmb Reports. PMID 34674797   
2021 Gomez MA, Belew AT, Navas A, Rosales-Chilama M, Murillo J, Dillon LAL, Alexander TA, Martinez-Valencia A, El-Sayed NM. Early Leukocyte Responses in Models of Healing and Non-Healing Human Infections. Frontiers in Cellular and Infection Microbiology. 11: 687607. PMID 34557423 DOI: 10.3389/fcimb.2021.687607   
2021 Douglas EJA, Duggan S, Brignoli T, Massey RC. The MpsB protein contributes to both the toxicity and immune evasion capacity of . Microbiology (Reading, England). 167. PMID 34618666 DOI: 10.1099/mic.0.001096   
2021 Choi H, Hwang M, Chatterjee P, Jinadatha C, Navarathna DH. Rare Lelliottia nimipressuralis from a wound infection case report using whole genome sequencing-based bacterial identification. Diagnostic Microbiology and Infectious Disease. 101: 115538. PMID 34619568 DOI: 10.1016/j.diagmicrobio.2021.115538   
2021 Liu Y, Liu M, Hu R, Bai J, He X, Jin Y. Isolation of the Novel Phage PHB09 and Its Potential Use against the Plant Pathogen pv. . Viruses. 13. PMID 34835081 DOI: 10.3390/v13112275   
2021 Kong HH, Oh J. State of residency: microbial strain diversity in the skin. The Journal of Investigative Dermatology. PMID 34688614 DOI: 10.1016/j.jid.2021.10.005   
2021 Winter M, Buckling A, Harms K, Johnsen PJ, Vos M. Antimicrobial resistance acquisition via natural transformation: context is everything. Current Opinion in Microbiology. 64: 133-138. PMID 34710742 DOI: 10.1016/j.mib.2021.09.009   
2021 Hoffmann A, Müller T, Fingerle V, Noll M. Presence of Human Pathogens of the sensu lato Complex Shifts the Sequence Read Abundances of Tick Microbiomes in Two German Locations. Microorganisms. 9. PMID 34576710 DOI: 10.3390/microorganisms9091814   
2021 Pérez JC. The interplay between gut bacteria and the yeast . Gut Microbes. 13: 1979877. PMID 34586038 DOI: 10.1080/19490976.2021.1979877   
2021 Domingo R, Perez C, Klair D, Vu H, Candelario-Tochiki A, Wang X, Camson A, Uy JN, Salameh M, Arizala D, Dobhal S, Boluk G, Bingham JP, Ochoa-Corona F, Ali ME, et al. Genome-informed loop-mediated isothermal amplification assay for specific detection of Pectobacterium parmentieri in infected potato tissues and soil. Scientific Reports. 11: 21948. PMID 34753982 DOI: 10.1038/s41598-021-01196-4   
2021 Nickerson KP, Llanos-Chea A, Ingano L, Serena G, Miranda-Ribera A, Perlman M, Lima R, Sztein MB, Fasano A, Senger S, Faherty CS. A Versatile Human Intestinal Organoid-Derived Epithelial Monolayer Model for the Study of Enteric Pathogens. Microbiology Spectrum. 9: e0000321. PMID 34106568 DOI: 10.1128/Spectrum.00003-21   
2021 Su Q, Wang Q, Mu X, Chen H, Meng Y, Zhang X, Zheng L, Hu X, Zhai Y, Zheng H. Strain-level analysis reveals the vertical microbial transmission during the life cycle of bumblebee. Microbiome. 9: 216. PMID 34732245 DOI: 10.1186/s40168-021-01163-1   
2021 Zhou Y, Yi S, Zang Y, Yao Q, Zhu H. The Predatory Myxobacterium gen. nov. sp. nov. Showed Antifungal Activity and Bacteriolytic Property against Phytopathogens. Microorganisms. 9. PMID 34683458 DOI: 10.3390/microorganisms9102137   
2021 Javkar K, Rand H, Hoffmann M, Luo Y, Sarria S, Thirunavukkarasu N, Pillai CA, McGann P, Johnson JK, Strain E, Pop M. Whole-Genome Assessment of Clinical Isolates Uncovers Potentially Novel Factors Influencing Carbapenem Resistance. Frontiers in Microbiology. 12: 714284. PMID 34659144 DOI: 10.3389/fmicb.2021.714284   
2021 Mousavi SA, Gao Y, Penttinen P, Frostegård Å, Paulin L, Lindström K. Using amplicon sequencing of rpoB for identification of inoculant rhizobia from peanut nodules. Letters in Applied Microbiology. PMID 34753197 DOI: 10.1111/lam.13599   
2021 Hidayah N, McNeil M, Li J, Bhuiyan S, Galea V, Aitken K. Resistance mechanisms and expression of disease resistance-related genes in sugarcane (Sacchrum officinarum) to Sporisorium scitamineum infection. Functional Plant Biology : Fpb. PMID 34724620 DOI: 10.1071/FP21122   
2021 Liu M, Wang K, Ghimire R, Haapanen M, Kivimäenpää M, Asiegbu F. Molecular and Chemical Screening for Inherent Disease Resistance Factors of Norway spruce () Clones against Conifer Stem Rot Pathogen . Phytopathology. PMID 34698543 DOI: 10.1094/PHYTO-09-21-0379-R   
2021 Pavelquesi SLS, de Oliveira Ferreira ACA, Rodrigues ARM, de Souza Silva CM, Orsi DC, da Silva ICR. Presence of Tetracycline and Sulfonamide Resistance Genes in spp.: Literature Review. Antibiotics (Basel, Switzerland). 10. PMID 34827252 DOI: 10.3390/antibiotics10111314