| Year |
Citation |
Score |
| 2020 |
Kaczmarczyk A, Meng H, Ordu O, Noort JV, Dekker NH. Chromatin fibers stabilize nucleosomes under torsional stress. Nature Communications. 11: 126. PMID 31913285 DOI: 10.1038/S41467-019-13891-Y |
0.308 |
|
| 2019 |
Ordu O, Lusser A, Dekker NH. DNA Sequence Is a Major Determinant of Tetrasome Dynamics. Biophysical Journal. PMID 31521330 DOI: 10.1016/J.Bpj.2019.07.055 |
0.37 |
|
| 2018 |
Janissen R, Arens MMA, Vtyurina NN, Rivai Z, Sunday ND, Eslami-Mossallam B, Gritsenko AA, Laan L, de Ridder D, Artsimovitch I, Dekker NH, Abbondanzieri EA, Meyer AS. Global DNA Compaction in Stationary-Phase Bacteria Does Not Affect Transcription. Cell. PMID 30057118 DOI: 10.1016/J.Cell.2018.06.049 |
0.397 |
|
| 2018 |
van Oene MM, Dickinson LE, Pedaci F, Köber M, Dulin D, Lipfert J, Dekker NH. Publisher's Note: Biological Magnetometry: Torque on Superparamagnetic Beads in Magnetic Fields [Phys. Rev. Lett. 114, 218301 (2015)]. Physical Review Letters. 120: 259901. PMID 29979053 DOI: 10.1103/Physrevlett.120.259901 |
0.659 |
|
| 2018 |
Kaczmarczyk A, Brouwer TB, Pham C, Dekker NH, van Noort J. Probing Chromatin Structure with Magnetic Tweezers. Methods in Molecular Biology (Clifton, N.J.). 1814: 297-323. PMID 29956240 DOI: 10.1007/978-1-4939-8591-3_18 |
0.399 |
|
| 2018 |
van Oene MM, Ha S, Jager T, Lee M, Pedaci F, Lipfert J, Dekker NH. Quantifying the Precision of Single-Molecule Torque and Twist Measurements Using Allan Variance. Biophysical Journal. 114: 1970-1979. PMID 29694873 DOI: 10.1016/J.Bpj.2018.02.039 |
0.386 |
|
| 2018 |
Ordu O, Kremser L, Lusser A, Dekker NH. Modification of the histone tetramer at the H3-H3 interface impacts tetrasome conformations and dynamics. The Journal of Chemical Physics. 148: 123323. PMID 29604863 DOI: 10.1063/1.5009100 |
0.355 |
|
| 2017 |
Berghuis BA, Raducanu VS, Elshenawy MM, Jergic S, Depken M, Dixon NE, Hamdan SM, Dekker NH. What is all this fuss about Tus? Comparison of recent findings from biophysical and biochemical experiments. Critical Reviews in Biochemistry and Molecular Biology. 1-15. PMID 29108427 DOI: 10.1080/10409238.2017.1394264 |
0.402 |
|
| 2017 |
Dulin D, Arnold JJ, van Laar T, Oh HS, Lee C, Perkins AL, Harki DA, Depken M, Cameron CE, Dekker NH. Signatures of Nucleotide Analog Incorporation by an RNA-Dependent RNA Polymerase Revealed Using High-Throughput Magnetic Tweezers. Cell Reports. 21: 1063-1076. PMID 29069588 DOI: 10.1016/J.Celrep.2017.10.005 |
0.692 |
|
| 2017 |
Kaczmarczyk A, Allahverdi A, Brouwer TB, Nordenskiöld L, Dekker NH, van Noort J. Single-molecule force spectroscopy on histone H4 tail cross-linked chromatin reveals fiber folding. The Journal of Biological Chemistry. PMID 28855255 DOI: 10.1074/Jbc.M117.791830 |
0.324 |
|
| 2017 |
de Leeuw R, Brazda P, Charl Moolman M, Kerssemakers JWJ, Solano B, Dekker NH. Measuring In Vivo Protein Dynamics Throughout the Cell Cycle Using Microfluidics. Methods in Molecular Biology (Clifton, N.J.). 1624: 237-252. PMID 28842888 DOI: 10.1007/978-1-4939-7098-8_18 |
0.748 |
|
| 2017 |
Kriegel F, Ermann N, Forbes R, Dulin D, Dekker NH, Lipfert J. Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers. Nucleic Acids Research. PMID 28460037 DOI: 10.1093/Nar/Gkx280 |
0.711 |
|
| 2016 |
Ordu O, Lusser A, Dekker NH. Recent insights from in vitro single-molecule studies into nucleosome structure and dynamics. Biophysical Reviews. 8: 33-49. PMID 28058066 DOI: 10.1007/S12551-016-0212-Z |
0.404 |
|
| 2016 |
Moolman MC, Tiruvadi Krishnan S, Kerssemakers JW, de Leeuw R, Lorent V, Sherratt DJ, Dekker NH. The progression of replication forks at natural replication barriers in live bacteria. Nucleic Acids Research. PMID 27166373 DOI: 10.1093/Nar/Gkw397 |
0.331 |
|
| 2016 |
Vtyurina NN, Dulin D, Docter MW, Meyer AS, Dekker NH, Abbondanzieri EA. Hysteresis in DNA compaction by Dps is described by an Ising model. Proceedings of the National Academy of Sciences of the United States of America. PMID 27091987 DOI: 10.1073/Pnas.1521241113 |
0.714 |
|
| 2016 |
Berghuis BA, Köber M, van Laar T, Dekker NH. High-throughput, high-force probing of DNA-protein interactions with magnetic tweezers. Methods (San Diego, Calif.). PMID 27038745 DOI: 10.1016/J.Ymeth.2016.03.025 |
0.458 |
|
| 2016 |
Ostrofet E, Ha S, Janissen R, van Laar T, Dekker N. Stretched Oriented DNA Arrays (SODA) as a Tool for Studying Protein-DNA Interactions Biophysical Journal. 110: 166a. DOI: 10.1016/J.Bpj.2015.11.925 |
0.404 |
|
| 2016 |
Kaczmarczyk A, Vendel K, Allahverdi A, Nordenskiöld L, Dekker NH, van Noort J. Unravelling the Role of Linker Histone H1 and the H4-Tail in Chromatin (Un-)Folding Biophysical Journal. 110: 68a. DOI: 10.1016/J.Bpj.2015.11.433 |
0.313 |
|
| 2016 |
Berghuis BA, Wassenburg JP, Wilschut JM, van Laar T, Dixon NE, Depken M, Dekker NH. Dissection of E.Coli DNA Replication in High Resolution with Temperature-Controlled Magnetic Tweezers Biophysical Journal. 110: 63a. DOI: 10.1016/J.Bpj.2015.11.407 |
0.411 |
|
| 2016 |
Ordu O, Vlijm R, Lee M, Lusser A, Dekker C, Dekker NH. Investigating the Handedness Dynamics of Tetrasomes Biophysical Journal. 110: 562a. DOI: 10.1016/J.Bpj.2015.11.3007 |
0.366 |
|
| 2016 |
Ussembayev YY, Ha S, Janissen R, van Oene MM, Dekker NH. Trapping of Highly Birefringent Rutile Nanocylinders in the Optical Torque Wrench Biophysical Journal. 110: 499a. DOI: 10.1016/J.Bpj.2015.11.2668 |
0.382 |
|
| 2016 |
Vtyurina NN, Dulin D, Docter MW, Meyer AS, Dekker NH, Abbondanzieri EA. An Ising Model Describes Hysteresis in a Novel form of Cooperative Binding Biophysical Journal. 110: 239a. DOI: 10.1016/J.Bpj.2015.11.1317 |
0.673 |
|
| 2015 |
Dulin D, Cui TJ, Cnossen J, Docter MW, Lipfert J, Dekker NH. High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics. Biophysical Journal. 109: 2113-25. PMID 26588570 DOI: 10.1016/J.Bpj.2015.10.018 |
0.719 |
|
| 2015 |
Dulin D, Vilfan ID, Berghuis BA, Poranen MM, Depken M, Dekker NH. Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site. Nucleic Acids Research. PMID 26496948 DOI: 10.1093/Nar/Gkv1098 |
0.685 |
|
| 2015 |
Dulin D, Berghuis BA, Depken M, Dekker NH. Untangling reaction pathways through modern approaches to high-throughput single-molecule force-spectroscopy experiments. Current Opinion in Structural Biology. 34: 116-22. PMID 26434413 DOI: 10.1016/J.Sbi.2015.08.007 |
0.703 |
|
| 2015 |
Berghuis BA, Dulin D, Xu ZQ, van Laar T, Cross B, Janissen R, Jergic S, Dixon NE, Depken M, Dekker NH. Strand separation establishes a sustained lock at the Tus-Ter replication fork barrier. Nature Chemical Biology. PMID 26147356 DOI: 10.1038/Nchembio.1857 |
0.68 |
|
| 2015 |
van Oene MM, Dickinson LE, Pedaci F, Köber M, Dulin D, Lipfert J, Dekker NH. Biological magnetometry: torque on superparamagnetic beads in magnetic fields. Physical Review Letters. 114: 218301. PMID 26066460 DOI: 10.1103/Physrevlett.114.218301 |
0.705 |
|
| 2015 |
Lipfert J, Wiggin M, Kerssemakers JW, Pedaci F, Dekker NH. Corrigendum: Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids. Nature Communications. 6: 7192. PMID 26013668 DOI: 10.1038/Ncomms8192 |
0.3 |
|
| 2015 |
Dulin D, Vilfan ID, Berghuis BA, Hage S, Bamford DH, Poranen MM, Depken M, Dekker NH. Elongation-Competent Pauses Govern the Fidelity of a Viral RNA-Dependent RNA Polymerase. Cell Reports. PMID 25683720 DOI: 10.1016/J.Celrep.2015.01.031 |
0.68 |
|
| 2015 |
Vlijm R, Lee M, Lipfert J, Lusser A, Dekker C, Dekker NH. Nucleosome assembly dynamics involve spontaneous fluctuations in the handedness of tetrasomes. Cell Reports. 10: 216-25. PMID 25578730 DOI: 10.1016/J.Celrep.2014.12.022 |
0.382 |
|
| 2015 |
Van Oene MM, Dickinson LE, Pedaci F, Köber M, Dulin D, Lipfert J, Dekker NH. Biological magnetometry: Torque on superparamagnetic beads in magnetic fields Physical Review Letters. 114. DOI: 10.1103/PhysRevLett.114.218301 |
0.643 |
|
| 2015 |
Ha S, Ussembayev Y, Janissen R, van Oene M, Dekker NH. Fabrication and Surface Functionalization of Highly Birefringent Rutile Particles for Trapping in an Optical Torque Wrench Biophysical Journal. 108: 337a. DOI: 10.1016/J.Bpj.2014.11.1838 |
0.346 |
|
| 2015 |
Ostrofet E, Ha S, Janissen R, van Laar T, Dekker N. Stretched, Oriented DNA Arrays (SODA) for Fluorescence Based Single-Molecule Experiments in Complex Environment Biophysical Journal. 108: 321a. DOI: 10.1016/J.Bpj.2014.11.1747 |
0.409 |
|
| 2015 |
Vtyurina N, Dulin D, Docter M, Dekker N, Meyer A, Abbondanzieri E. Chromosome Reorganization by the Highly Cooperative Dps Protein Biophysical Journal. 108: 15a. DOI: 10.1016/J.Bpj.2014.11.107 |
0.715 |
|
| 2014 |
Yu Z, Dulin D, Cnossen J, Köber M, van Oene MM, Ordu O, Berghuis BA, Hensgens T, Lipfert J, Dekker NH. A force calibration standard for magnetic tweezers. The Review of Scientific Instruments. 85: 123114. PMID 25554279 DOI: 10.1063/1.4904148 |
0.691 |
|
| 2014 |
Moolman MC, Krishnan ST, Kerssemakers JW, van den Berg A, Tulinski P, Depken M, Reyes-Lamothe R, Sherratt DJ, Dekker NH. Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells. Nature Communications. 5: 5820. PMID 25520215 DOI: 10.1038/Ncomms6820 |
0.367 |
|
| 2014 |
Cnossen JP, Dulin D, Dekker NH. An optimized software framework for real-time, high-throughput tracking of spherical beads Review of Scientific Instruments. 85. PMID 25362408 DOI: 10.1063/1.4898178 |
0.674 |
|
| 2014 |
Lipfert J, Skinner GM, Keegstra JM, Hensgens T, Jager T, Dulin D, Köber M, Yu Z, Donkers SP, Chou FC, Das R, Dekker NH. Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA. Proceedings of the National Academy of Sciences of the United States of America. 111: 15408-13. PMID 25313077 DOI: 10.1073/Pnas.1407197111 |
0.724 |
|
| 2014 |
Janissen R, Berghuis BA, Dulin D, Wink M, van Laar T, Dekker NH. Invincible DNA tethers: covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments. Nucleic Acids Research. 42: e137. PMID 25140010 DOI: 10.1093/Nar/Gku677 |
0.719 |
|
| 2014 |
Lipfert J, Lee M, Ordu O, Kerssemakers JWJ, Dekker NH. Magnetic tweezers for the measurement of twist and torque Journal of Visualized Experiments : Jove. PMID 24894412 DOI: 10.3791/51503 |
0.39 |
|
| 2014 |
Cnossen J, Dulin D, Dekker NH. Accurate High Throughput Bright Field Bead Tracking using Gpu Hardware Biophysical Journal. 106: 603a. DOI: 10.1016/J.Bpj.2013.11.3337 |
0.687 |
|
| 2014 |
Lipfert J, van Oene M, Jager T, Lee M, Pedaci F, Dekker NH. Quantifying the Resolution of Single-Molecule Torque Measurements by Allan Variance Biophysical Journal. 106: 450a. DOI: 10.1016/J.Bpj.2013.11.2549 |
0.351 |
|
| 2014 |
Janissen R, Berghuis BA, Ordu O, Wink MM, Dulin D, Cnossen JP, Dekker NH. Single Molecule Studies of DNA-Binding Proteins: Development of New Covalent DNA Anchoring Techniques for the Study of Rupture Forces of Replication Blocks Biophysical Journal. 106: 394a. DOI: 10.1016/J.Bpj.2013.11.2224 |
0.737 |
|
| 2014 |
van Oene M, Dickinson LE, Pedaci F, Lipfert J, Dulin D, Cnossen JP, Docter MW, Dekker NH. Magnetization Properties of Superparamagnetic Beads Biophysical Journal. 106: 393a. DOI: 10.1016/J.Bpj.2013.11.2222 |
0.692 |
|
| 2014 |
Ha S, van Oene M, Janissen R, Dekker NH. Fabrication and Surface Functionalization of Highly Birefringent Particles for Optical Torque Wrench Biophysical Journal. 106: 393a. DOI: 10.1016/J.Bpj.2013.11.2220 |
0.338 |
|
| 2014 |
Koeber M, Yu Z, Aguan K, Berghuis B, Dulin D, Dekker NH. SV40 Helicase Unwinds DNA against Force Biophysical Journal. 106: 273a. DOI: 10.1016/J.Bpj.2013.11.1599 |
0.722 |
|
| 2014 |
Tiruvadi Krishnan S, Charl Moolman M, Kerssemakers JW, van Laar T, Tulinski P, Reyes-Lamothe R, Sherratt DJ, Dekker NH. Investigating the Dynamics of the β2 Sliding Clamp in Escherichia Coli at the Single-Cell Level Utilizing Single-Molecule Fluorescence Microscopy Biophysical Journal. 106: 273a. DOI: 10.1016/J.Bpj.2013.11.1598 |
0.324 |
|
| 2014 |
Berghuis BA, Dulin D, Cross B, Dixon NE, Dekker NH. Roadblocks on the E.Coli Genome: The Workings of a Molecular Mouse Trap at the Single-Molecule Level Biophysical Journal. 106: 230a. DOI: 10.1016/J.Bpj.2013.11.1344 |
0.72 |
|
| 2013 |
Lee M, Lipfert J, Sanchez H, Wyman C, Dekker NH. Structural and torsional properties of the RAD51-dsDNA nucleoprotein filament Nucleic Acids Research. 41: 7023-7030. PMID 23703213 DOI: 10.1093/Nar/Gkt425 |
0.424 |
|
| 2013 |
Dulin D, Lipfert J, Moolman MC, Dekker NH. Studying genomic processes at the single-molecule level: Introducing the tools and applications Nature Reviews Genetics. 14: 9-22. PMID 23150038 DOI: 10.1038/Nrg3316 |
0.671 |
|
| 2013 |
Moolman C, Krishnan ST, Kerssemakers JW, Hage S, Reyes-Lamothe R, Sherratt D, Dekker NH. Investigating DNA Replication in Escherichia Coli on the Single Cell Level Utilizing Microfluidics and Single-Molecule Fluorescence Microscopy Biophysical Journal. 104: 368a-369a. DOI: 10.1016/J.Bpj.2012.11.2048 |
0.41 |
|
| 2013 |
Dulin D, Vilfan ID, Berghuis BA, Hage S, Bamford DH, Poranen M, Depken M, Dekker NH. Backtracking and Other Off-Path Pauses Control the Dynamic of Viral RNA Dependent RNA Polymerases Biophysical Journal. 104: 364a. DOI: 10.1016/J.Bpj.2012.11.2022 |
0.699 |
|
| 2013 |
Dekker N. The RNA Molecule and its Processing by Molecular Motors Biophysical Journal. 104: 185a. DOI: 10.1016/J.Bpj.2012.11.1047 |
0.408 |
|
| 2013 |
Lipfert J, Skinner GM, Keegstra J, Hensgens T, Jager T, Dulin D, Donkers S, Dekker NH. Probing the Response of Double-Stranded RNA to Force and Torque at the Single-Molecule Level Biophysical Journal. 104: 1a-2a. DOI: 10.1016/J.Bpj.2012.11.023 |
0.718 |
|
| 2012 |
Janssen XJ, Lipfert J, Jager T, Daudey R, Beekman J, Dekker NH. Electromagnetic torque tweezers: a versatile approach for measurement of single-molecule twist and torque. Nano Letters. 12: 3634-9. PMID 22642488 DOI: 10.1021/Nl301330H |
0.418 |
|
| 2012 |
Janssen XJ, Lipfert J, Daudey C, van der Does J, Roos D, Beekman J, Dekker NH. Introducing the Electromagnetic Torque Tweezers Biophysical Journal. 102: 386a. DOI: 10.1016/J.Bpj.2011.11.2112 |
0.413 |
|
| 2012 |
Dulin D, Vilfan I, Depken M, Hage S, Kamping W, Poranen M, Bamford D, Dekker NH. A Magnetic Tweezers Study of a RNA-Dependant RNA Polymerase Biophysical Journal. 102: 286a. DOI: 10.1016/J.Bpj.2011.11.1582 |
0.703 |
|
| 2012 |
Moolman C, Tiruvadi Krishnan S, Donkers S, Reyes-Lamothe R, Sherratt D, Dekker N. In Vivo Investigation of DNA Replication in Escherichia Coli using Single-Molecule Fluorescence Microscopy Biophysical Journal. 102: 284a. DOI: 10.1016/J.Bpj.2011.11.1569 |
0.399 |
|
| 2012 |
Lipfert J, Skinner GM, Donkers S, Huang Z, Dulin D, Keegstra JM, Hensgens T, Dekker NH. The Mechanical Properties of Double-Stranded RNA in Response to Force and Torque Biophysical Journal. 102: 275a. DOI: 10.1016/J.Bpj.2011.11.1514 |
0.721 |
|
| 2011 |
Lipfert J, Kerssemakers JJW, Rojer M, Dekker NH. A method to track rotational motion for use in single-molecule biophysics Review of Scientific Instruments. 82. PMID 22047303 DOI: 10.1063/1.3650461 |
0.373 |
|
| 2011 |
Lipfert J, Wiggin M, Kerssemakers JWJ, Pedaci F, Dekker NH. Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids Nature Communications. 2. PMID 21863006 DOI: 10.1038/Ncomms1450 |
0.443 |
|
| 2011 |
English BP, Hauryliuk V, Sanamrad A, Tankov S, Dekker NH, Elf J. Single-molecule investigations of the stringent response machinery in living bacterial cells. Proceedings of the National Academy of Sciences of the United States of America. 108: E365-73. PMID 21730169 DOI: 10.1073/Pnas.1102255108 |
0.699 |
|
| 2011 |
van den Hout M, Skinner GM, Klijnhout S, Krudde V, Dekker NH. The passage of homopolymeric RNA through small solid-state nanopores. Small (Weinheim An Der Bergstrasse, Germany). 7: 2217-24. PMID 21638785 DOI: 10.1002/Smll.201100265 |
0.388 |
|
| 2011 |
Huang Z, Pedaci F, van Oene M, Wiggin MJ, Dekker NH. Electron beam fabrication of birefringent microcylinders. Acs Nano. 5: 1418-27. PMID 21280614 DOI: 10.1021/Nn1034108 |
0.34 |
|
| 2011 |
Huang Z, Donkers S, Dekker NH. Zero-Mode Waveguides: A Powerful Tool for Single-Molecule Optical Studies Biophysical Journal. 100: 619a. DOI: 10.1016/J.Bpj.2010.12.3565 |
0.341 |
|
| 2011 |
Wiggin MJ, Lipfert J, van Wijk R, Kerssemakers J, Dekker N. Freely Orbiting Magnetic Tweezers: A New Twist on Single Molecule Force Spectroscopy Biophysical Journal. 100: 23a-24a. DOI: 10.1016/J.Bpj.2010.12.335 |
0.455 |
|
| 2011 |
Pedaci F, Huang Z, Van Oene M, Barland S, Dekker NH. Excitable particles in an optical torque wrench Nature Physics. 7: 259-264. DOI: 10.1016/J.Bpj.2010.12.268 |
0.306 |
|
| 2011 |
Moolman C, Krishnan ST, Dekker N. Towards In Vivo Tracking of the E. coli Replisome Utilizing Single-Molecule Fluorescence Microscopy Biophysical Journal. 100: 242a. DOI: 10.1016/J.Bpj.2010.12.1538 |
0.401 |
|
| 2011 |
Skinner GM, Donkers SP, Lipfert J, Huang Z, Dekker NH. Characterization of Supercoiled Double-Stranded RNA, and Comparison to Double-Stranded DNA Biophysical Journal. 100: 236a. DOI: 10.1016/J.Bpj.2010.12.1503 |
0.459 |
|
| 2011 |
Lipfert J, Skinner GM, Wiggin MJ, Kerssemakers JW, Jager T, Dekker NH. Magnetic Torque Tweezers and Their Application in Probing the Torsional Properties of DNA, RNA, and DNA Filaments Biophysical Journal. 100: 176a. DOI: 10.1016/J.Bpj.2010.12.1183 |
0.463 |
|
| 2011 |
Lipfert J, Herschlag D, Doniach S, Dekker NH. RNA Structure, Function, and (Thermo-) Dynamics: A SAXS and Single-Molecule Perspective Biophysical Journal. 100: 1a-2a. DOI: 10.1016/J.Bpj.2010.11.060 |
0.352 |
|
| 2011 |
van den Hout M, Skinner GM, Klijnhout S, Krudde V, Dekker NH. Nanopores: The Passage of Homopolymeric RNA through Small Solid-State Nanopores (Small 15/2011) Small. 7: 2125-2125. DOI: 10.1002/Smll.201190052 |
0.309 |
|
| 2010 |
van den Hout M, Krudde V, Janssen XJ, Dekker NH. Distinguishable populations report on the interactions of single DNA molecules with solid-state nanopores. Biophysical Journal. 99: 3840-8. PMID 21112309 DOI: 10.1016/J.Bpj.2010.10.012 |
0.422 |
|
| 2010 |
Lipfert J, Kerssemakers JWJ, Jager T, Dekker NH. Magnetic torque tweezers: Measuring torsional stiffness in DNA and RecA-DNA filaments Nature Methods. 7: 977-980. PMID 20953173 DOI: 10.1038/Nmeth.1520 |
0.404 |
|
| 2010 |
Koster DA, Crut A, Shuman S, Bjornsti MA, Dekker NH. Cellular strategies for regulating DNA supercoiling: a single-molecule perspective. Cell. 142: 519-30. PMID 20723754 DOI: 10.1016/J.Cell.2010.08.001 |
0.403 |
|
| 2010 |
Te Velthuis AJW, Kerssemakers JWJ, Lipfert J, Dekker NH. Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data Biophysical Journal. 99: 1292-1302. PMID 20713015 DOI: 10.1016/J.Bpj.2010.06.008 |
0.391 |
|
| 2010 |
Lipfert J, Klijnhout S, Dekker NH. Torsional sensing of small-molecule binding using magnetic tweezers Nucleic Acids Research. 38: 7122-7132. PMID 20624816 DOI: 10.1093/Nar/Gkq598 |
0.4 |
|
| 2010 |
van den Hout M, Hall AR, Wu MY, Zandbergen HW, Dekker C, Dekker NH. Controlling nanopore size, shape and stability. Nanotechnology. 21: 115304. PMID 20173233 DOI: 10.1088/0957-4484/21/11/115304 |
0.306 |
|
| 2010 |
van den Hout M, Vilfan ID, Hage S, Dekker NH. Direct force measurements on double-stranded RNA in solid-state nanopores. Nano Letters. 10: 701-7. PMID 20050676 DOI: 10.1021/Nl903925A |
0.409 |
|
| 2010 |
Vilfan ID, Poranen MM, Bamford DH, Dekker N. RNA-Dependent RNA Pausing or Taking a Long Coffee Break Biophysical Journal. 98: 68a. DOI: 10.1016/J.Bpj.2009.12.388 |
0.415 |
|
| 2010 |
Lipfert J, Laverman PJ, Koster I, Palle K, Bjornsti M, Dekker NH. Topoisomerase IB Activity Investigated By Single Molecule Magnetic Tweezers: Mechanisms of Cytotoxicity Biophysical Journal. 98: 63a. DOI: 10.1016/J.Bpj.2009.12.361 |
0.354 |
|
| 2010 |
Wiggin MJ, Dekker N. Protein-DNA Interactions Studies using Magnetic Tweezers Biophysical Journal. 98: 593a. DOI: 10.1016/J.Bpj.2009.12.3229 |
0.451 |
|
| 2010 |
English BP, Sanamrad A, Hauryliuk V, Dekker N, Elf J. Single Molecule Tracking Inside Individual Living Bacterial Cells Biophysical Journal. 98: 587a. DOI: 10.1016/J.Bpj.2009.12.3190 |
0.7 |
|
| 2010 |
Skinner GM, Donkers SP, Lipfert J, Dekker NH. Supercoiling Double-Stranded RNA Biophysical Journal. 98: 468a. DOI: 10.1016/J.Bpj.2009.12.2545 |
0.416 |
|
| 2010 |
van den Hout M, Vilfan ID, Hage S, Donkers S, te Veldhuis A, Dekker NH. Measuring Direct Forces on dsRNA in Solid State Nanopores Biophysical Journal. 98: 423a. DOI: 10.1016/J.Bpj.2009.12.2288 |
0.42 |
|
| 2010 |
Pedaci F, Klijnhout S, van Oene M, Kerssemakers JW, Dekker NH. Optical Torque Wrench for Single Molecule Studies Biophysical Journal. 98: 188a. DOI: 10.1016/J.Bpj.2009.12.1009 |
0.431 |
|
| 2009 |
Lipfert J, Koster DA, Vilfan ID, Hage S, Dekker NH. Single-molecule magnetic tweezers studies of type IB topoisomerases. Methods in Molecular Biology (Clifton, N.J.). 582: 71-89. PMID 19763943 DOI: 10.1007/978-1-60761-340-4_7 |
0.426 |
|
| 2009 |
Skinner GM, van den Hout M, Broekmans O, Dekker C, Dekker NH. Distinguishing single- and double-stranded nucleic acid molecules using solid-state nanopores. Nano Letters. 9: 2953-60. PMID 19537802 DOI: 10.1021/Nl901370W |
0.411 |
|
| 2009 |
Lipfert J, Hao X, Dekker NH. Quantitative modeling and optimization of magnetic tweezers Biophysical Journal. 96: 5040-5049. PMID 19527664 DOI: 10.1016/J.Bpj.2009.03.055 |
0.389 |
|
| 2009 |
Keyser UF, van der Does J, Dekker C, Dekker NH. Inserting and manipulating DNA in a nanopore with optical tweezers Methods in Molecular Biology (Clifton, N.J.). 544: 95-112. PMID 19488696 DOI: 10.1007/978-1-59745-483-4_8 |
0.361 |
|
| 2009 |
Smeets RM, Kowalczyk SW, Hall AR, Dekker NH, Dekker C. Translocation of RecA-coated double-stranded DNA through solid-state nanopores. Nano Letters. 9: 3089-96. PMID 19053490 DOI: 10.1021/Nl803189K |
0.386 |
|
| 2009 |
Van Dorp S, Keyser UF, Dekker NH, Dekker C, Lemay SG. Origin of the electrophoretic force on DNA in solid-state nanopores Nature Physics. 5: 347-351. DOI: 10.1038/Nphys1230 |
0.399 |
|
| 2009 |
Kowalczyk SW, Smeets RM, Hall AR, Dekker NH, Dekker C. Static and Dynamic Investigations of RecA-DNA Complex with a Solid-State Nanopore Biophysical Journal. 96: 649a. DOI: 10.1016/J.Bpj.2008.12.3858 |
0.416 |
|
| 2009 |
van den Hout M, Skinner GM, Broekmans OD, Dekker C, Dekker NH. Salt Dependence Of RNA Translocations Through Solid State Nanopores Biophysical Journal. 96: 645a. DOI: 10.1016/J.Bpj.2008.12.3837 |
0.386 |
|
| 2009 |
Skinner GM, van den Hout M, Broekmans O, Dekker C, Dekker NH. Probing the Structural Properties of RNA using Solid-State Nanopores Biophysical Journal. 96: 544a. DOI: 10.1016/J.Bpj.2008.12.2946 |
0.43 |
|
| 2009 |
Huang Z, Donkers S, Kerssemakers JW, Dekker NH. Zero-Mode Waveguides for Real-Time Observation of Single Nucleotide Incorporation Biophysical Journal. 96: 59a. DOI: 10.1016/J.Bpj.2008.12.200 |
0.318 |
|
| 2009 |
Lipfert J, Klijnhout S, Dekker NH. Small-Molecule Binding to DNA under Tension and Twist Studied by Magnetic Tweezers Biophysical Journal. 96: 216a. DOI: 10.1016/J.Bpj.2008.12.1898 |
0.436 |
|
| 2008 |
Crut A, Koster DA, Huang Z, Hage S, Dekker NH. Controlling the surface properties of nanostructures for studies of polymerases. Nanotechnology. 19: 465301. PMID 21836239 DOI: 10.1088/0957-4484/19/46/465301 |
0.355 |
|
| 2008 |
Vilfan ID, Candelli A, Hage S, Aalto AP, Poranen MM, Bamford DH, Dekker NH. Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate. Nucleic Acids Research. 36: 7059-67. PMID 18986997 DOI: 10.1093/Nar/Gkn836 |
0.326 |
|
| 2008 |
van den Hout M, Hage S, Dekker C, Dekker NH. End-joining long nucleic acid polymers Nucleic Acids Research. 36. PMID 18658247 DOI: 10.1093/Nar/Gkn442 |
0.414 |
|
| 2008 |
Crut A, Nair PA, Koster DA, Shuman S, Dekker NH. Dynamics of phosphodiester synthesis by DNA ligase. Proceedings of the National Academy of Sciences of the United States of America. 105: 6894-9. PMID 18458338 DOI: 10.1073/Pnas.0800113105 |
0.389 |
|
| 2008 |
Koster DA, Czerwinski F, Halby L, Crut A, Vekhoff P, Palle K, Arimondo PB, Dekker NH. Single-molecule observations of topotecan-mediated TopIB activity at a unique DNA sequence. Nucleic Acids Research. 36: 2301-10. PMID 18292117 DOI: 10.1093/Nar/Gkn035 |
0.377 |
|
| 2007 |
Vilfan ID, Kamping W, van den Hout M, Candelli A, Hage S, Dekker NH. An RNA toolbox for single-molecule force spectroscopy studies. Nucleic Acids Research. 35: 6625-39. PMID 17905817 DOI: 10.1093/Nar/Gkm585 |
0.367 |
|
| 2007 |
Crut A, Koster DA, Seidel R, Wiggins CH, Dekker NH. Fast dynamics of supercoiled DNA revealed by single-molecule experiments. Proceedings of the National Academy of Sciences of the United States of America. 104: 11957-62. PMID 17623785 DOI: 10.1073/Pnas.0700333104 |
0.394 |
|
| 2007 |
Koster DA, Palle K, Bot ES, Bjornsti MA, Dekker NH. Antitumour drugs impede DNA uncoiling by topoisomerase I. Nature. 448: 213-7. PMID 17589503 DOI: 10.1038/Nature05938 |
0.39 |
|
| 2007 |
Besteman K, Hage S, Dekker NH, Lemay SG. Role of tension and twist in single-molecule DNA condensation Physical Review Letters. 98. DOI: 10.1103/Physrevlett.98.058103 |
0.416 |
|
| 2006 |
Moreno-Herrero F, Seidel R, Johnson SM, Fire A, Dekker NH. Structural analysis of hyperperiodic DNA from Caenorhabditis elegans. Nucleic Acids Research. 34: 3057-66. PMID 16738142 DOI: 10.1093/Nar/Gkl397 |
0.388 |
|
| 2006 |
Stanley LK, Seidel R, van der Scheer C, Dekker NH, Szczelkun MD, Dekker C. When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I. The Embo Journal. 25: 2230-9. PMID 16642041 DOI: 10.1038/Sj.Emboj.7601104 |
0.39 |
|
| 2006 |
Koster DA, Wiggins CH, Dekker NH. Multiple events on single molecules: unbiased estimation in single-molecule biophysics. Proceedings of the National Academy of Sciences of the United States of America. 103: 1750-5. PMID 16439482 DOI: 10.1073/Pnas.0510509103 |
0.319 |
|
| 2006 |
Smeets RM, Keyser UF, Krapf D, Wu MY, Dekker NH, Dekker C. Salt dependence of ion transport and DNA translocation through solid-state nanopores. Nano Letters. 6: 89-95. PMID 16402793 DOI: 10.1021/Nl052107W |
0.307 |
|
| 2006 |
Keyser UF, Van Der Does J, Dekker C, Dekker NH. Optical tweezers for force measurements on DNA in nanopores Review of Scientific Instruments. 77. DOI: 10.1063/1.2358705 |
0.406 |
|
| 2006 |
Keyser UF, Koeleman BN, Van Dorp S, Krapf D, Smeets RMM, Lemay SG, Dekker NH, Dekker C. Direct force measurements on DNA in a solid-state nanopore Nature Physics. 2: 473-477. DOI: 10.1038/Nphys344 |
0.436 |
|
| 2005 |
Seidel R, Bloom JG, van Noort J, Dutta CF, Dekker NH, Firman K, Szczelkun MD, Dekker C. Dynamics of initiation, termination and reinitiation of DNA translocation by the motor protein EcoR124I. The Embo Journal. 24: 4188-97. PMID 16292342 DOI: 10.1038/Sj.Emboj.7600881 |
0.364 |
|
| 2005 |
Moreno-Herrero F, Holtzer L, Koster DA, Shuman S, Dekker C, Dekker NH. Atomic force microscopy shows that vaccinia topoisomerase IB generates filaments on DNA in a cooperative fashion Nucleic Acids Research. 33: 5945-5953. PMID 16237128 DOI: 10.1093/Nar/Gki906 |
0.407 |
|
| 2005 |
Moreno-Herrero F, de Jager M, Dekker NH, Kanaar R, Wyman C, Dekker C. Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA. Nature. 437: 440-3. PMID 16163361 DOI: 10.1038/Nature03927 |
0.366 |
|
| 2005 |
van der Heijden T, van Noort J, van Leest H, Kanaar R, Wyman C, Dekker NH, Dekker N, Dekker C. Torque-limited RecA polymerization on dsDNA. Nucleic Acids Research. 33: 2099-105. PMID 15824062 DOI: 10.1093/Nar/Gki512 |
0.441 |
|
| 2005 |
Koster DA, Croquette V, Dekker C, Shuman S, Dekker NH. Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB. Nature. 434: 671-4. PMID 15800630 DOI: 10.1038/Nature03395 |
0.395 |
|
| 2005 |
Abels JA, Moreno-Herrero F, Van Der Heijden T, Dekker C, Dekker NH. Single-molecule measurements of the persistence length of double-stranded RNA Biophysical Journal. 88: 2737-2744. PMID 15653727 DOI: 10.1529/Biophysj.104.052811 |
0.454 |
|
| 2004 |
Dekker NH, Abels JA, Veenhuizen PT, Bruinink MM, Dekker C. Joining of long double-stranded RNA molecules through controlled overhangs Nucleic Acids Research. 32. PMID 15475386 DOI: 10.1093/Nar/Gnh138 |
0.351 |
|
| 2004 |
Seidel R, van Noort J, van der Scheer C, Bloom JG, Dekker NH, Dutta CF, Blundell A, Robinson T, Firman K, Dekker C. Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I. Nature Structural & Molecular Biology. 11: 838-43. PMID 15300241 DOI: 10.1038/Nsmb816 |
0.399 |
|
| 2003 |
Dekker NH, Viard T, Bouthier de La Tour C, Bensimon D, Croquette V. [Enzymes that relax supercoiled DNA]. MéDecine Sciences : M/S. 19: 398-400. PMID 12836207 DOI: 10.1051/Medsci/2003194398 |
0.33 |
|
| 2003 |
Dekker NH, Viard T, Bouthier De La Tour C, Duguet M, Bensimon D, Croquette V. Thermophilic topoisomerase I on a single DNA molecule Journal of Molecular Biology. 329: 271-282. PMID 12758075 DOI: 10.1016/S0022-2836(03)00320-6 |
0.423 |
|
| 2003 |
Strick TR, Dessinges MN, Charvin G, Dekker NH, Allemand JF, Bensimon D, Croquette V. Stretching of macromolecules and proteins Reports On Progress in Physics. 66: 1-45. DOI: 10.1088/0034-4885/66/1/201 |
0.357 |
|
| 2002 |
Dekker NH, Rybenkov VV, Duguet M, Crisona NJ, Cozzarelli NR, Bensimon D, Croquette V. The mechanism of type IA topoisomerases. Proceedings of the National Academy of Sciences of the United States of America. 99: 12126-31. PMID 12167668 DOI: 10.1073/Pnas.132378799 |
0.338 |
|
| 2002 |
Strick TR, Charvin G, Dekker NH, Allemand JF, Bensimon D, Croquette V. Tracking enzymatic steps of DNA topoisomerases using single-molecule micromanipulation Comptes Rendus Physique. 3: 595-618. DOI: 10.1016/S1631-0705(02)01347-6 |
0.44 |
|
| 2000 |
Dekker NH, Lee CS, Lorent V, Thywissen JH, Smith SP, Drndic M, Westervelt RM, Prentiss M. Guiding neutral atoms on a chip Physical Review Letters. 84: 1124-7. PMID 11017459 DOI: 10.1103/Physrevlett.84.1124 |
0.728 |
|
| 1998 |
Johnson KS, Thywissen JH, Dekker NH, Berggren KK, Chu AP, Younkin R, Prentiss M. Localization of metastable atom beams with optical standing waves: nanolithography at the heisenberg limit Science (New York, N.Y.). 280: 1583-6. PMID 9616117 DOI: 10.1126/Science.280.5369.1583 |
0.749 |
|
| 1998 |
Thywissen JH, Johnson KS, Dekker NH, Chu AP, Prentiss M. Using neutral atoms and standing light waves to form a calibration artifact for length metrology Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 16: 3841-3845. DOI: 10.1116/1.590420 |
0.712 |
|
| 1998 |
Thywissen JH, Johnson KS, Dekker NH, Prentiss M, Wong SS, Weiss K, Grunze M. Metastable-atom-activated growth of an ultrathin carbonaceous resist for reactive ion etching of SiO2 and Si3N4 Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 16: 1155-1160. DOI: 10.1116/1.590026 |
0.699 |
|
| 1998 |
Johnson KS, Thywissen JH, Dekker NH, Chu AP, Younkin R, Berggren KK, Prentiss M. Atom lithography using standing-wave quenching Technical Digest - European Quantum Electronics Conference. 166-167. |
0.72 |
|
| 1997 |
Thywissen JH, Johnson KS, Younkin R, Dekker NH, Berggren KK, Chu AP, Prentiss M, Lee SA. Nanofabrication using neutral atomic beams Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 15: 2093-2100. DOI: 10.1116/1.589227 |
0.75 |
|
| 1997 |
Johnson KS, Berggren KK, Black AJ, Black CT, Chu AP, Dekker NH, Ralph DC, Thywissen JH, Younkin RJ, Prentiss MG, Tinkham M, Whitesides GM. Using neutral metastable argon atoms and contamination lithography to form nanostructures in silicon, silicon dioxide, and gold Proceedings of Spie - the International Society For Optical Engineering. 2995: 97-108. DOI: 10.1063/1.117671 |
0.746 |
|
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