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Troy A. Lionberger, Ph.D. - Publications

Affiliations: 
2010 University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
General Biophysics, Molecular Biology, Biomedical Engineering
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Righini M, Lee A, Cañari-Chumpitaz C, Lionberger T, Gabizon R, Coello Y, Tinoco I, Bustamante C. Full molecular trajectories of RNA polymerase at single base-pair resolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 29351994 DOI: 10.1073/Pnas.1719906115  0.348
2016 Jiang C, Lionberger TA, Wiener DM, Meyhofer E. Electromagnetic tweezers with independent force and torque control. The Review of Scientific Instruments. 87: 084304. PMID 27587135 DOI: 10.1063/1.4960811  0.622
2014 Ishibashi T, Dangkulwanich M, Coello Y, Lionberger TA, Lubkowska L, Ponticelli AS, Kashlev M, Bustamante C. Transcription factors IIS and IIF enhance transcription efficiency by differentially modifying RNA polymerase pausing dynamics. Proceedings of the National Academy of Sciences of the United States of America. 111: 3419-24. PMID 24550488 DOI: 10.1073/Pnas.1401611111  0.335
2014 Lionberger TA, Vahia A, Hirsh AD, Taranova M, Andricioaei I, Perkins NC, Meyhöfer E, Martin CT. Mechanical Strain Generated by RNA Polymerase during Transcription Initiation can Drive Structural Changes in DNA Topology that Relieve Repression Biophysical Journal. 106: 488a. DOI: 10.1016/J.Bpj.2013.11.4478  0.728
2013 Hirsh AD, Taranova M, Lionberger TA, Lillian TD, Andricioaei I, Perkins NC. Structural ensemble and dynamics of toroidal-like DNA shapes in bacteriophage ϕ29 exit cavity. Biophysical Journal. 104: 2058-67. PMID 23663849 DOI: 10.1016/J.Bpj.2013.03.032  0.529
2013 Wiener DM, Lionberger TA. Two-color, laser excitation improves temporal resolution for detecting the dynamic, plasmonic coupling between metallic nanoparticles. Analytical Chemistry. 85: 5095-102. PMID 23581610 DOI: 10.1021/Ac4004453  0.304
2013 Becker NA, Peters JP, Maher LJ, Lionberger TA. Mechanism of promoter repression by Lac repressor-DNA loops. Nucleic Acids Research. 41: 156-66. PMID 23143103 DOI: 10.1093/Nar/Gks1011  0.426
2013 Hirsh AD, Lillian TD, Lionberger TA, Taranova M, Andricioaei I, Perkins NC. A model for highly strained DNA compressed inside a protein cavity Journal of Computational and Nonlinear Dynamics. 8. DOI: 10.1115/1.4007535  0.417
2013 Taranova M, Lionberger TA, Hirsh AD, Perkins NC, Andricioaei I. Transcription on Tangled DNA Biophysical Journal. 104: 585a. DOI: 10.1016/J.Bpj.2012.11.3252  0.606
2012 Teng CH, Lionberger TA, Zhang J, Meyhöfer E, Ku PC. Fabrication of nanoscale zero-mode waveguides using microlithography for single molecule sensing. Nanotechnology. 23: 455301. PMID 23085680 DOI: 10.1088/0957-4484/23/45/455301  0.579
2012 Lionberger TA, Teng C, Ku P, Meyhöfer E. A Novel, Wafer-Level Method to Fabricate Zero-Mode Waveguides for Single Molecule Detection Biophysical Journal. 102: 581a. DOI: 10.1016/J.Bpj.2011.11.3164  0.578
2012 Wiener DM, Lionberger TA. A Method for Time-Resolved Ratiometric Detection of Plasmon Coupling Between Gold Nanoparticles for Single-Molecule Binding Assays Biophysical Journal. 102: 580a. DOI: 10.1016/J.Bpj.2011.11.3160  0.328
2012 Hirsh AD, Taranova M, Lillian TD, Lionberger TA, Andricioaei I, Perkins NC. The Structure and Function of Highly Bent Toroidal DNA in Bacteriophage φ29 Biophysical Journal. 102: 421a-422a. DOI: 10.1016/J.Bpj.2011.11.2305  0.503
2012 Taranova M, Lionberger TA, Hirsh AD, Perkins NC, Andricioaei I. Impact of Bending and Torsional Deformations of DNA on the Function of T7-RNA Polymerase Biophysical Journal. 102: 285a. DOI: 10.1016/J.Bpj.2011.11.1578  0.605
2011 Lionberger TA, Demurtas D, Witz G, Dorier J, Lillian T, Meyhöfer E, Stasiak A. Cooperative kinking at distant sites in mechanically stressed DNA. Nucleic Acids Research. 39: 9820-32. PMID 21917856 DOI: 10.1093/Nar/Gkr666  0.585
2011 Hirsh AD, Lillian TD, Lionberger TA, Perkins NC. DNA modeling reveals an extended lac repressor conformation in classic in vitro binding assays. Biophysical Journal. 101: 718-26. PMID 21806940 DOI: 10.1016/J.Bpj.2011.06.040  0.554
2011 Hoerter JA, Krishnan V, Lionberger TA, Walter NG. siRNA-like double-stranded RNAs are specifically protected against degradation in human cell extract. Plos One. 6: e20359. PMID 21647381 DOI: 10.1371/Journal.Pone.0020359  0.363
2011 Lillian TD, Lionberger T, Demurtas D, Dorier J, Stasiak A, Meyhofer E, Perkins N. Mechanical Analysis Methodology for DNA Minicircles Observed by Cryo-Em Biophysical Journal. 100: 76a. DOI: 10.1016/J.Bpj.2010.12.620  0.693
2011 Lionberger TA, Vahia A, Martin CT, Meyhöfer E. Tightly Looped DNA Represses Transcription Initiation by T7 RNA Polymerase Biophysical Journal. 100: 65a. DOI: 10.1016/J.Bpj.2010.12.552  0.732
2011 Hirsh AD, Taranova M, Lillian TD, Lionberger TA, Andricioaei I, Perkins NC. Investigating a Novel Toroid-Shaped DNA Structure Found in Mature Bacteriophage φ29 Biophysical Journal. 100: 401a. DOI: 10.1016/J.Bpj.2010.12.2384  0.54
2011 Lionberger TA, Demurtas D, Lillian T, Dorier J, Perkins N, Stasiak A, Meyhofer E. Structural Characterization of Torsional Destabilization in DNA Biophysical Journal. 100: 176a. DOI: 10.1016/J.Bpj.2010.12.1184  0.714
2010 Lionberger TA, Meyhöfer E. Bending the rules of transcriptional repression: tightly looped DNA directly represses T7 RNA polymerase. Biophysical Journal. 99: 1139-48. PMID 20712997 DOI: 10.1016/J.Bpj.2010.04.074  0.733
2010 Cai D, Kaul N, Lionberger TA, Wiener DM, Verhey KJ, Meyhofer E. Recording single motor proteins in the cytoplasm of mammalian cells. Methods in Enzymology. 475: 81-107. PMID 20627154 DOI: 10.1016/S0076-6879(10)75004-7  0.639
2010 Lionberger T, Meyhöfer E. Highly Bent DNA: A Novel Repressor of T7 RNA Polymerase Biophysical Journal. 98: 69a. DOI: 10.1016/J.Bpj.2009.12.392  0.725
2010 Cline E, Lionberger TA, Meyhofer E. Characterizing the Relationship Between DNA Bending and Transcription Elongation By T7 RNA Polymerase Biophysical Journal. 98: 68a. DOI: 10.1016/J.Bpj.2009.12.386  0.72
2010 Wiener DM, Lionberger TA, Meyhöfer E. Development of a Plasmonic Nanoparticle-Based Assay to Observe Nanoscale Biological Dynamic Interactions Biophysical Journal. 98: 587a. DOI: 10.1016/J.Bpj.2009.12.3191  0.61
2010 Lionberger T, Demurtas D, Lillian T, Dorier J, Perkins N, Stasiak A, Meyhofer E. A Direct Observation of Highly Bent and Twisted DNA at the Single Molecule Level Biophysical Journal. 98: 467a. DOI: 10.1016/J.Bpj.2009.12.2539  0.705
2009 Lionberger TA, Meyhofer E. Characterizing the Effects of Highly Bent DNA on Transcription Biophysical Journal. 96: 56a. DOI: 10.1016/J.Bpj.2008.12.188  0.722
2009 Wiener DM, Lionberger TA, Schrader SA, Kurabayashi K, Meyhöfer E. A Novel Experimental Platform for DNA Mechanics Assays Biophysical Journal. 96: 290a. DOI: 10.1016/J.Bpj.2008.12.1435  0.713
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