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Shiladitya Banerjee - Publications

Affiliations: 
2008 Physics Chennai Mathematical Institute 
 2008-2013 Physics Syracuse University, Syracuse, NY, United States 
 2013-2016 Physics University of Chicago, Chicago, IL 
 2016-2020 Physics University College London 
 2020- Physics Carnegie Mellon University, Pittsburgh, PA 
Area:
Biophysics
Website:
http://shiladitya-banerjee.com/
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66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Banerjee DS, Freedman SL, Murrell MP, Banerjee S. Growth-induced collective bending and kinetic trapping of cytoskeletal filaments. Biorxiv : the Preprint Server For Biology. PMID 38260433 DOI: 10.1101/2024.01.09.574885  0.803
2023 Werner ME, Ray DD, Breen C, Staddon MF, Jug F, Banerjee S, Maddox AS. Mechanical positive feedback and biochemical negative feedback combine to generate complex contractile oscillations in cytokinesis. Biorxiv : the Preprint Server For Biology. PMID 38076901 DOI: 10.1101/2023.12.01.569672  0.786
2023 Carpenter LC, Pérez-Verdugo F, Banerjee S. Mechanical control of cell proliferation patterns in growing tissues. Biorxiv : the Preprint Server For Biology. PMID 37546964 DOI: 10.1101/2023.07.25.550581  0.365
2023 Banerjee DS, Banerjee S. Catalytic growth in a shared enzyme pool ensures robust control of centrosome size. Biorxiv : the Preprint Server For Biology. PMID 37333186 DOI: 10.1101/2023.06.06.543875  0.798
2023 Sakamoto R, Banerjee DS, Yadav V, Chen S, Gardel ML, Sykes C, Banerjee S, Murrell MP. Author Correction: Membrane tension induces F-actin reorganization and flow in a biomimetic model cortex. Communications Biology. 6: 470. PMID 37117264 DOI: 10.1038/s42003-023-04818-x  0.759
2023 Sakamoto R, Banerjee DS, Yadav V, Chen S, Gardel M, Sykes C, Banerjee S, Murrell MP. Membrane tension induces F-actin reorganization and flow in a biomimetic model cortex. Communications Biology. 6: 325. PMID 36973388 DOI: 10.1038/s42003-023-04684-7  0.798
2023 Cylke A, Banerjee S. Super-exponential growth and stochastic size dynamics in rod-like bacteria. Biophysical Journal. PMID 36814380 DOI: 10.1016/j.bpj.2023.02.015  0.324
2022 Cavanaugh KE, Staddon MF, Chmiel TA, Harmon R, Budnar S, Yap AS, Banerjee S, Gardel ML. Force-dependent intercellular adhesion strengthening underlies asymmetric adherens junction contraction. Current Biology : Cb. 32: 4779. PMID 36347221 DOI: 10.1016/j.cub.2022.10.011  0.786
2022 Staddon MF, Murrell MP, Banerjee S. Interplay between substrate rigidity and tissue fluidity regulates cell monolayer spreading. Soft Matter. PMID 36205535 DOI: 10.1039/d2sm00757f  0.826
2022 Cylke C, Si F, Banerjee S. Effects of antibiotics on bacterial cell morphology and their physiological origins. Biochemical Society Transactions. PMID 36093840 DOI: 10.1042/BST20210894  0.315
2022 Banerjee DS, Banerjee S. Size regulation of multiple organelles competing for a limiting subunit pool. Plos Computational Biology. 18: e1010253. PMID 35714135 DOI: 10.1371/journal.pcbi.1010253  0.782
2022 Ojkic N, Serbanescu D, Banerjee S. Antibiotic Resistance via Bacterial Cell Shape-Shifting. Mbio. e0065922. PMID 35616332 DOI: 10.1128/mbio.00659-22  0.747
2022 Banerjee DS, Banerjee S. Emergence and maintenance of variable-length actin filaments in a limiting pool of building blocks. Biophysical Journal. PMID 35598045 DOI: 10.1016/j.bpj.2022.05.014  0.804
2022 Cavanaugh KE, Staddon MF, Chmiel TA, Harmon R, Budnar S, Yap AS, Banerjee S, Gardel ML. Force-dependent intercellular adhesion strengthening underlies asymmetric adherens junction contraction. Current Biology : Cb. PMID 35381185 DOI: 10.1016/j.cub.2022.03.024  0.825
2022 Staddon MF, Munro EM, Banerjee S. Pulsatile contractions and pattern formation in excitable actomyosin cortex. Plos Computational Biology. 18: e1009981. PMID 35353813 DOI: 10.1371/journal.pcbi.1009981  0.771
2021 Serbanescu D, Ojkic N, Banerjee S. Cellular resource allocation strategies for cell size and shape control in bacteria. The Febs Journal. PMID 34665933 DOI: 10.1111/febs.16234  0.779
2021 Gradeci D, Bove A, Vallardi G, Lowe AR, Banerjee S, Charras G. Cell-scale biophysical determinants of cell competition in epithelia. Elife. 10. PMID 34014166 DOI: 10.7554/eLife.61011  0.811
2021 Maniou E, Staddon MF, Marshall AR, Greene NDE, Copp AJ, Banerjee S, Galea GL. Hindbrain neuropore tissue geometry determines asymmetric cell-mediated closure dynamics in mouse embryos. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33941697 DOI: 10.1073/pnas.2023163118  0.8
2021 Ojkic N, Banerjee S. Bacterial cell shape control by nutrient-dependent synthesis of cell division inhibitors. Biophysical Journal. PMID 33838134 DOI: 10.1016/j.bpj.2021.04.001  0.788
2020 Banerjee S, Gardel ML, Schwarz US. The Actin Cytoskeleton as an Active Adaptive Material. Annual Review of Condensed Matter Physics. 11: 421-439. PMID 33343823 DOI: 10.1146/annurev-conmatphys-031218-013231  0.602
2020 Serbanescu D, Ojkic N, Banerjee S. Nutrient-Dependent Trade-Offs between Ribosomes and Division Protein Synthesis Control Bacterial Cell Size and Growth. Cell Reports. 32: 108183. PMID 32966800 DOI: 10.1016/j.celrep.2020.108183  0.785
2020 Cornwall Scoones J, Banerjee DS, Banerjee S. Size-Regulated Symmetry Breaking in Reaction-Diffusion Models of Developmental Transitions. Cells. 9. PMID 32659915 DOI: 10.3390/Cells9071646  0.79
2020 Cavanaugh KE, Staddon MF, Banerjee S, Gardel ML. Adaptive viscoelasticity of epithelial cell junctions: from models to methods. Current Opinion in Genetics & Development. 63: 86-94. PMID 32604032 DOI: 10.1016/J.Gde.2020.05.018  0.828
2020 Blackie L, Walther RF, Staddon MF, Banerjee S, Pichaud F. Cell-type specific mechanical response and myosin dynamics during retinal lens development in . Molecular Biology of the Cell. mbcE19090523. PMID 32320320 DOI: 10.1091/Mbc.E19-09-0523  0.811
2020 Banerjee S, Gardel ML, Schwarz US. The Actin Cytoskeleton as an Active Adaptive Material Annual Review of Condensed Matter Physics. 11: 421-439. DOI: 10.1146/Annurev-Conmatphys-031218-013231  0.641
2019 Yadav V, Banerjee DS, Tabatabai AP, Kovar DR, Kim T, Banerjee S, Murrell MP. Filament Nucleation Tunes Mechanical Memory in Active Polymer Networks. Advanced Functional Materials. 29. PMID 32523502 DOI: 10.1002/Adfm.201905243  0.795
2019 Ajeti V, Tabatabai AP, Fleszar AJ, Staddon MF, Seara DS, Suarez C, Yousafzai MS, Bi D, Kovar DR, Banerjee S, Murrell MP. Wound Healing Coordinates Actin Architectures to Regulate Mechanical Work. Nature Physics. 15: 696-705. PMID 31897085 DOI: 10.1038/S41567-019-0485-9  0.829
2019 Cavanaugh KE, Staddon MF, Munro E, Banerjee S, Gardel ML. RhoA Mediates Epithelial Cell Shape Changes via Mechanosensitive Endocytosis. Developmental Cell. PMID 31883774 DOI: 10.1016/J.Devcel.2019.12.002  0.802
2019 Tetley RJ, Staddon MF, Heller D, Hoppe A, Banerjee S, Mao Y. Tissue Fluidity Promotes Epithelial Wound Healing. Nature Physics. 15: 1195-1203. PMID 31700525 DOI: 10.1038/S41567-019-0618-1  0.784
2019 Staddon MF, Cavanaugh KE, Munro EM, Gardel ML, Banerjee S. Mechanosensitive Junction Remodeling Promotes Robust Epithelial Morphogenesis. Biophysical Journal. PMID 31635790 DOI: 10.1016/J.Bpj.2019.09.027  0.821
2019 Banerjee S, Marchetti MC. Continuum Models of Collective Cell Migration. Advances in Experimental Medicine and Biology. 1146: 45-66. PMID 31612453 DOI: 10.1007/978-3-030-17593-1_4  0.613
2019 Ojkic N, Serbanescu D, Banerjee S. Surface-to-volume scaling and aspect ratio preservation in rod-shaped bacteria. Elife. 8. PMID 31456563 DOI: 10.7554/Elife.47033  0.803
2019 Gradeci D, Bove A, Charras G, Lowe AR, Banerjee S. Single-cell approaches to cell competition: high-throughput imaging, machine learning and simulations. Seminars in Cancer Biology. PMID 31108201 DOI: 10.1016/J.Semcancer.2019.05.007  0.811
2019 Karki S, Banerjee S, Mclean K, Dinner A, Clark MR. Transcription factories in Igκ allelic choice and diversity. Advances in Immunology. 141: 33-49. PMID 30904132 DOI: 10.1016/Bs.Ai.2018.11.001  0.524
2019 Ojkic N, Serbanescu D, Banerjee S. Author response: Surface-to-volume scaling and aspect ratio preservation in rod-shaped bacteria Elife. DOI: 10.7554/Elife.47033.015  0.734
2019 Murrell M, Banerjee S, Ajeti V, Tabatabai P, Fleszar A, Staddon M, Seara D, Suarez C, Muhammad S, Bi D, Kovar D. Work and Dissipation in the Cell Cytoskeleton Biophysical Journal. 116: 3a. DOI: 10.1016/J.Bpj.2018.11.040  0.749
2018 Seara DS, Yadav V, Linsmeier I, Tabatabai AP, Oakes PW, Tabei SMA, Banerjee S, Murrell MP. Entropy production rate is maximized in non-contractile actomyosin. Nature Communications. 9: 4948. PMID 30470750 DOI: 10.1038/S41467-018-07413-5  0.804
2018 Staddon MF, Bi D, Tabatabai AP, Ajeti V, Murrell MP, Banerjee S. Cooperation of dual modes of cell motility promotes epithelial stress relaxation to accelerate wound healing. Plos Computational Biology. 14: e1006502. PMID 30273354 DOI: 10.1371/Journal.Pcbi.1006502  0.819
2018 Schaumann EN, Staddon MF, Gardel ML, Banerjee S. Force localization modes in dynamic epithelial colonies. Molecular Biology of the Cell. mbcE18050336. PMID 30207837 DOI: 10.1091/Mbc.E18-05-0336  0.83
2018 Freedman SL, Hocky GM, Banerjee S, Dinner AR. Nonequilibrium phase diagrams for actomyosin networks. Soft Matter. PMID 30204203 DOI: 10.1039/C8Sm00741A  0.799
2018 Karki S, Kennedy DE, Mclean K, Grzybowski AT, Maienschein-Cline M, Banerjee S, Xu H, Davis E, Mandal M, Labno C, Powers SE, Le Beau MM, Dinner AR, Singh H, Ruthenburg AJ, et al. Regulated Capture of Vκ Gene Topologically Associating Domains by Transcription Factories. Cell Reports. 24: 2443-2456. PMID 30157436 DOI: 10.1016/J.Celrep.2018.07.091  0.696
2017 Stam S, Freedman SL, Banerjee S, Weirich KL, Dinner AR, Gardel ML. Filament rigidity and connectivity tune the deformation modes of active biopolymer networks. Proceedings of the National Academy of Sciences of the United States of America. PMID 29114058 DOI: 10.1073/Pnas.1708625114  0.721
2017 Bove A, Gradeci D, Fujita Y, Banerjee S, Charras G, Lowe AR. Local cellular neighbourhood controls proliferation in cell competition. Molecular Biology of the Cell. PMID 28931601 DOI: 10.1091/Mbc.E17-06-0368  0.806
2017 Freedman SL, Banerjee S, Hocky GM, Dinner AR. A Versatile Framework for Simulating the Dynamic Mechanical Structure of Cytoskeletal Networks. Biophysical Journal. 113: 448-460. PMID 28746855 DOI: 10.1016/J.Bpj.2017.06.003  0.791
2017 Banerjee S, Lo K, Daddysman MK, Selewa A, Kuntz T, Dinner AR, Scherer NF. Biphasic growth dynamics control cell division in Caulobacter crescentus. Nature Microbiology. 2: 17116. PMID 28737755 DOI: 10.1038/Nmicrobiol.2017.116  0.741
2017 Weirich KL, Banerjee S, Dasbiswas K, Witten TA, Vaikuntanathan S, Gardel ML. Liquid behavior of cross-linked actin bundles. Proceedings of the National Academy of Sciences of the United States of America. PMID 28202730 DOI: 10.1073/Pnas.1616133114  0.62
2016 Linsmeier I, Banerjee S, Oakes PW, Jung W, Kim T, Murrell MP. Disordered actomyosin networks are sufficient to produce cooperative and telescopic contractility. Nature Communications. 7: 12615. PMID 27558758 DOI: 10.1038/Ncomms12615  0.698
2016 Notbohm J, Banerjee S, Utuje KJ, Gweon B, Jang H, Park Y, Shin J, Butler JP, Fredberg JJ, Marchetti MC. Cellular Contraction and Polarization Drive Collective Cellular Motion. Biophysical Journal. 110: 2729-38. PMID 27332131 DOI: 10.1016/J.Bpj.2016.05.019  0.767
2016 Liang WG, Triandafillou CG, Huang TY, Zulueta MM, Banerjee S, Dinner AR, Hung SC, Tang WJ. Structural basis for oligomerization and glycosaminoglycan binding of CCL5 and CCL3. Proceedings of the National Academy of Sciences of the United States of America. PMID 27091995 DOI: 10.1073/Pnas.1523981113  0.526
2016 Banerjee S, Scherer NF, Dinner AR. Shape dynamics of growing cell walls. Soft Matter. PMID 26953519 DOI: 10.1039/C5Sm02991K  0.751
2015 Banerjee S, Utuje KJ, Marchetti MC. Propagating Stress Waves During Epithelial Expansion. Physical Review Letters. 114: 228101. PMID 26196647 DOI: 10.1103/Physrevlett.114.228101  0.799
2015 Hemingway EJ, Maitra A, Banerjee S, Marchetti MC, Ramaswamy S, Fielding SM, Cates ME. Active viscoelastic matter: from bacterial drag reduction to turbulent solids. Physical Review Letters. 114: 098302. PMID 25793858 DOI: 10.1103/Physrevlett.114.098302  0.411
2015 Wright CS, Banerjee S, Iyer-Biswas S, Crosson S, Dinner AR, Scherer NF. Intergenerational continuity of cell shape dynamics in Caulobacter crescentus. Scientific Reports. 5: 9155. PMID 25778096 DOI: 10.1038/Srep09155  0.815
2014 Oakes PW, Banerjee S, Marchetti MC, Gardel ML. Geometry regulates traction stresses in adherent cells. Biophysical Journal. 107: 825-33. PMID 25140417 DOI: 10.1016/J.Bpj.2014.06.045  0.742
2014 Banerjee S, Sknepnek R, Marchetti MC. Optimal shapes and stresses of adherent cells on patterned substrates. Soft Matter. 10: 2424-30. PMID 24623319 DOI: 10.1039/C3Sm52647J  0.585
2014 Oakes PW, Banerjee S, Marchetti MC, Gardel ML. How Cellular Geometry Regulates Traction Stresses in Adherent Cells Biophysical Journal. 106: 234a. DOI: 10.1016/J.Bpj.2013.11.1374  0.73
2013 Mertz AF, Che Y, Banerjee S, Goldstein JM, Rosowski KA, Revilla SF, Niessen CM, Marchetti MC, Dufresne ER, Horsley V. Cadherin-based intercellular adhesions organize epithelial cell-matrix traction forces. Proceedings of the National Academy of Sciences of the United States of America. 110: 842-7. PMID 23277553 DOI: 10.1073/Pnas.1217279110  0.583
2013 Banerjee S, Cristina Marchetti M. Controlling cell–matrix traction forces by extracellular geometry New Journal of Physics. 15: 035015. DOI: 10.1088/1367-2630/15/3/035015  0.438
2013 Banerjee S, Giomi L. Polymorphism and bistability in adherent cells Soft Matter. 9: 5251-5260. DOI: 10.1039/C3Sm27791G  0.457
2012 Banerjee S, Marchetti MC. Contractile stresses in cohesive cell layers on finite-thickness substrates. Physical Review Letters. 109: 108101. PMID 23005331 DOI: 10.1103/Physrevlett.109.108101  0.56
2012 Mertz AF, Banerjee S, Che Y, German GK, Xu Y, Hyland C, Marchetti MC, Horsley V, Dufresne ER. Scaling of traction forces with the size of cohesive cell colonies. Physical Review Letters. 108: 198101. PMID 23003091 DOI: 10.1103/Physrevlett.108.198101  0.55
2012 German GK, Engl WC, Pashkovski E, Banerjee S, Xu Y, Mertz AF, Hyland C, Dufresne ER. Heterogeneous drying stresses in stratum corneum. Biophysical Journal. 102: 2424-32. PMID 22713557 DOI: 10.1016/J.Bpj.2012.04.045  0.341
2011 Banerjee S, Marchetti MC, Müller-Nedebock K. Motor-driven dynamics of cytoskeletal filaments in motility assays. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 84: 011914. PMID 21867220 DOI: 10.1103/Physreve.84.011914  0.47
2011 Banerjee S, Liverpool TB, Marchetti MC. Generic phases of cross-linked active gels: Relaxation, oscillation and contractility Epl. 96. DOI: 10.1209/0295-5075/96/58004  0.433
2011 Banerjee S, Marchetti MC. Substrate rigidity deforms and polarizes active gels Epl. 96. DOI: 10.1209/0295-5075/96/28003  0.551
2011 Banerjee S, Marchetti MC. Instabilities and oscillations in isotropic active gels Soft Matter. 7: 463-473. DOI: 10.1039/C0Sm00494D  0.487
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