John Mattick - Publications

Affiliations: 
University of Queensland, Saint Lucia, Queensland, Australia 

202 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Hardwick SA, Chen WY, Wong T, Deveson IW, Blackburn J, Andersen SB, Nielsen LK, Mattick JS, Mercer TR. Spliced synthetic genes as internal controls in RNA sequencing experiments. Nature Methods. PMID 27502218 DOI: 10.1038/nmeth.3958  0.52
2016 Deveson IW, Chen WY, Wong T, Hardwick SA, Andersen SB, Nielsen LK, Mattick JS, Mercer TR. Representing genetic variation with synthetic DNA standards. Nature Methods. PMID 27502217 DOI: 10.1038/nmeth.3957  0.52
2016 Lu Z, Zhang QC, Lee B, Flynn RA, Smith MA, Robinson JT, Davidovich C, Gooding AR, Goodrich KJ, Mattick JS, Mesirov JP, Cech TR, Chang HY. RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure. Cell. PMID 27180905 DOI: 10.1016/j.cell.2016.04.028  0.52
2016 Zhao W, Mazar J, Lee B, Sawada J, Li JL, Shelley J, Govindarajan S, Towler D, Mattick JS, Komatsu M, Dinger ME, Perera RJ. The long non-coding RNA SPRIGHTLY regulates cell proliferation in primary human melanocytes. The Journal of Investigative Dermatology. PMID 26829028 DOI: 10.1016/j.jid.2016.01.018  0.52
2015 Briggs JA, Wolvetang EJ, Mattick JS, Rinn JL, Barry G. Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution. Neuron. 88: 861-77. PMID 26637795 DOI: 10.1016/j.neuron.2015.09.045  0.4
2015 Spadaro PA, Flavell CR, Widagdo J, Ratnu VS, Troup M, Ragan C, Mattick JS, Bredy TW. Long Noncoding RNA-Directed Epigenetic Regulation of Gene Expression Is Associated with Anxiety-like Behavior in Mice. Biological Psychiatry. PMID 25792222 DOI: 10.1016/j.biopsych.2015.02.004  0.4
2015 Clark MB, Mercer TR, Bussotti G, Leonardi T, Haynes KR, Crawford J, Brunck ME, Cao KA, Thomas GP, Chen WY, Taft RJ, Nielsen LK, Enright AJ, Mattick JS, Dinger ME. Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing. Nature Methods. 12: 339-42. PMID 25751143 DOI: 10.1038/nmeth.3321  0.52
2015 Londin E, Loher P, Telonis AG, Quann K, Clark P, Jing Y, Hatzimichael E, Kirino Y, Honda S, Lally M, Ramratnam B, Comstock CE, Knudsen KE, Gomella L, Spaeth GL, ... ... Mattick JS, et al. Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs. Proceedings of the National Academy of Sciences of the United States of America. 112: E1106-15. PMID 25713380 DOI: 10.1073/pnas.1420955112  0.52
2015 Mattick JS, Rinn JL. Discovery and annotation of long noncoding RNAs. Nature Structural & Molecular Biology. 22: 5-7. PMID 25565026 DOI: 10.1038/nsmb.2942  0.52
2015 Mercer TR, Clark MB, Andersen SB, Brunck ME, Haerty W, Crawford J, Taft RJ, Nielsen LK, Dinger ME, Mattick JS. Genome-wide discovery of human splicing branchpoints. Genome Research. 25: 290-303. PMID 25561518 DOI: 10.1101/gr.182899.114  0.52
2015 Werner A, Piatek MJ, Mattick JS. Transpositional shuffling and quality control in male germ cells to enhance evolution of complex organisms. Annals of the New York Academy of Sciences. 1341: 156-63. PMID 25557795 DOI: 10.1111/nyas.12608  0.52
2014 Mazar J, Zhao W, Khalil AM, Lee B, Shelley J, Govindarajan SS, Yamamoto F, Ratnam M, Aftab MN, Collins S, Finck BN, Han X, Mattick JS, Dinger ME, Perera RJ. The functional characterization of long noncoding RNA SPRY4-IT1 in human melanoma cells. Oncotarget. 5: 8959-69. PMID 25344859  0.52
2014 Cossetti C, Iraci N, Mercer TR, Leonardi T, Alpi E, Drago D, Alfaro-Cervello C, Saini HK, Davis MP, Schaeffer J, Vega B, Stefanini M, Zhao C, Muller W, Garcia-Verdugo JM, ... ... Mattick JS, et al. Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells. Molecular Cell. 56: 193-204. PMID 25242146 DOI: 10.1016/j.molcel.2014.08.020  0.52
2014 Mattick JS, Dziadek MA, Terrill BN, Kaplan W, Spigelman AD, Bowling FG, Dinger ME. The impact of genomics on the future of medicine and health. The Medical Journal of Australia. 201: 17-20. PMID 24999876 DOI: 10.5694/mja13.10920  0.52
2014 Liu PY, Erriquez D, Marshall GM, Tee AE, Polly P, Wong M, Liu B, Bell JL, Zhang XD, Milazzo G, Cheung BB, Fox A, Swarbrick A, Hüttelmaier S, Kavallaris M, ... ... Mattick JS, et al. Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression. Journal of the National Cancer Institute. 106. PMID 24906397 DOI: 10.1093/jnci/dju113  0.52
2014 Morris KV, Mattick JS. The rise of regulatory RNA. Nature Reviews. Genetics. 15: 423-37. PMID 24776770 DOI: 10.1038/nrg3722  0.52
2014 Mercer TR, Clark MB, Crawford J, Brunck ME, Gerhardt DJ, Taft RJ, Nielsen LK, Dinger ME, Mattick JS. Targeted sequencing for gene discovery and quantification using RNA CaptureSeq. Nature Protocols. 9: 989-1009. PMID 24705597 DOI: 10.1038/nprot.2014.058  0.52
2014 Nguyen TT, Mattick JS, Yang Q, Orman MA, Ierapetritou MG, Berthiaume F, Androulakis IP. Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver. Bmc Bioinformatics. 15: 83. PMID 24666587 DOI: 10.1186/1471-2105-15-83  0.52
2014 Barry G, Briggs JA, Vanichkina DP, Poth EM, Beveridge NJ, Ratnu VS, Nayler SP, Nones K, Hu J, Bredy TW, Nakagawa S, Rigo F, Taft RJ, Cairns MJ, Blackshaw S, ... ... Mattick JS, et al. The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing. Molecular Psychiatry. 19: 486-94. PMID 23628989 DOI: 10.1038/mp.2013.45  0.52
2013 Mattick JS. Probing the phenomics of noncoding RNA. Elife. 2: e01968. PMID 24381251 DOI: 10.7554/eLife.01968  0.52
2013 Liu G, Mercer TR, Shearwood AM, Siira SJ, Hibbs ME, Mattick JS, Rackham O, Filipovska A. Mapping of mitochondrial RNA-protein interactions by digital RNase footprinting. Cell Reports. 5: 839-48. PMID 24183674 DOI: 10.1016/j.celrep.2013.09.036  0.52
2013 Li JL, Mazar J, Zhong C, Faulkner GJ, Govindarajan SS, Zhang Z, Dinger ME, Meredith G, Adams C, Zhang S, Mattick JS, Ray A, Perera RJ. Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network. Scientific Reports. 3: 2962. PMID 24129253 DOI: 10.1038/srep02962  0.52
2013 Androulakis IP, Kamisoglu K, Mattick JS. Topology and dynamics of signaling networks: in search of transcriptional control of the inflammatory response. Annual Review of Biomedical Engineering. 15: 1-28. PMID 23862674 DOI: 10.1146/annurev-bioeng-071812-152425  0.52
2013 Smith MA, Gesell T, Stadler PF, Mattick JS. Widespread purifying selection on RNA structure in mammals. Nucleic Acids Research. 41: 8220-36. PMID 23847102 DOI: 10.1093/nar/gkt596  0.52
2013 Clark MB, Choudhary A, Smith MA, Taft RJ, Mattick JS. The dark matter rises: the expanding world of regulatory RNAs. Essays in Biochemistry. 54: 1-16. PMID 23829523 DOI: 10.1042/bse0540001  0.52
2013 Mercer TR, Mattick JS. Understanding the regulatory and transcriptional complexity of the genome through structure. Genome Research. 23: 1081-8. PMID 23817049 DOI: 10.1101/gr.156612.113  0.52
2013 Mercer TR, Edwards SL, Clark MB, Neph SJ, Wang H, Stergachis AB, John S, Sandstrom R, Li G, Sandhu KS, Ruan Y, Nielsen LK, Mattick JS, Stamatoyannopoulos JA. DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements. Nature Genetics. 45: 852-9. PMID 23793028 DOI: 10.1038/ng.2677  0.52
2013 Liu G, Mattick JS, Taft RJ. A meta-analysis of the genomic and transcriptomic composition of complex life. Cell Cycle (Georgetown, Tex.). 12: 2061-72. PMID 23759593 DOI: 10.4161/cc.25134  0.52
2013 Buske FA, Bauer DC, Mattick JS, Bailey TL. Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci. Bioinformatics (Oxford, England). 29: 1895-7. PMID 23740745 DOI: 10.1093/bioinformatics/btt315  0.52
2013 Amaral PP, Dinger ME, Mattick JS. Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective. Briefings in Functional Genomics. 12: 254-78. PMID 23709461 DOI: 10.1093/bfgp/elt016  0.52
2013 Cheetham SW, Gruhl F, Mattick JS, Dinger ME. Long noncoding RNAs and the genetics of cancer. British Journal of Cancer. 108: 2419-25. PMID 23660942 DOI: 10.1038/bjc.2013.233  0.52
2013 Rakoczy J, Fernandez-Valverde SL, Glazov EA, Wainwright EN, Sato T, Takada S, Combes AN, Korbie DJ, Miller D, Grimmond SM, Little MH, Asahara H, Mattick JS, Taft RJ, Wilhelm D. MicroRNAs-140-5p/140-3p modulate Leydig cell numbers in the developing mouse testis. Biology of Reproduction. 88: 143. PMID 23616593 DOI: 10.1095/biolreprod.113.107607  0.52
2013 Mattick JS, Kamisoglu K, Ierapetritou MG, Androulakis IP, Berthiaume F. Branched-chain amino acid supplementation: impact on signaling and relevance to critical illness. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 5: 449-60. PMID 23554299 DOI: 10.1002/wsbm.1219  0.52
2013 Mercer TR, Mattick JS. Structure and function of long noncoding RNAs in epigenetic regulation. Nature Structural & Molecular Biology. 20: 300-7. PMID 23463315 DOI: 10.1038/nsmb.2480  0.52
2013 Marcellin E, Mercer TR, Licona-Cassani C, Palfreyman RW, Dinger ME, Steen JA, Mattick JS, Nielsen LK. Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch. Bmc Genomics. 14: 15. PMID 23324121 DOI: 10.1186/1471-2164-14-15  0.52
2013 Cattenoz PB, Taft RJ, Westhof E, Mattick JS. Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage. Rna (New York, N.Y.). 19: 257-70. PMID 23264566 DOI: 10.1261/rna.036202.112  0.52
2013 Plummer PN, Freeman R, Taft RJ, Vider J, Sax M, Umer BA, Gao D, Johns C, Mattick JS, Wilton SD, Ferro V, McMillan NA, Swarbrick A, Mittal V, Mellick AS. MicroRNAs regulate tumor angiogenesis modulated by endothelial progenitor cells. Cancer Research. 73: 341-52. PMID 22836757 DOI: 10.1158/0008-5472.CAN-12-0271  0.52
2013 Mattick JS, Dinger ME. The extent of functionality in the human genome Hugo Journal. 7. DOI: 10.1186/1877-6566-7-2  0.52
2012 Nolan LM, Beatson SA, Croft L, Jones PM, George AM, Mattick JS, Turnbull L, Whitchurch CB. Extragenic suppressor mutations that restore twitching motility to fimL mutants of Pseudomonas aeruginosa are associated with elevated intracellular cyclic AMP levels. Microbiologyopen. 1: 490-501. PMID 23233287 DOI: 10.1002/mbo3.49  0.52
2012 Schonrock N, Harvey RP, Mattick JS. Long noncoding RNAs in cardiac development and pathophysiology. Circulation Research. 111: 1349-62. PMID 23104877 DOI: 10.1161/CIRCRESAHA.112.268953  0.52
2012 Gascoigne DK, Cheetham SW, Cattenoz PB, Clark MB, Amaral PP, Taft RJ, Wilhelm D, Dinger ME, Mattick JS. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes. Bioinformatics (Oxford, England). 28: 3042-50. PMID 23044541 DOI: 10.1093/bioinformatics/bts582  0.52
2012 Mattick JS. Rocking the foundations of molecular genetics. Proceedings of the National Academy of Sciences of the United States of America. 109: 16400-1. PMID 23019584 DOI: 10.1073/pnas.1214129109  0.52
2012 Barry G, Mattick JS. The role of regulatory RNA in cognitive evolution. Trends in Cognitive Sciences. 16: 497-503. PMID 22940578 DOI: 10.1016/j.tics.2012.08.007  0.52
2012 Pineda SS, Wilson D, Mattick JS, King GF. The lethal toxin from Australian funnel-web spiders is encoded by an intronless gene. Plos One. 7: e43699. PMID 22928020 DOI: 10.1371/journal.pone.0043699  0.52
2012 Smart CE, Askarian Amiri ME, Wronski A, Dinger ME, Crawford J, Ovchinnikov DA, Vargas AC, Reid L, Simpson PT, Song S, Wiesner C, French JD, Dave RK, da Silva L, Purdon A, ... ... Mattick JS, et al. Expression and function of the protein tyrosine phosphatase receptor J (PTPRJ) in normal mammary epithelial cells and breast tumors. Plos One. 7: e40742. PMID 22815804 DOI: 10.1371/journal.pone.0040742  0.52
2012 Mattick JS, Yang Q, Orman MA, Ierapetritou MG, Berthiaume F, Androulakis IP. Long-term gene expression profile dynamics following cecal ligation and puncture in the rat. The Journal of Surgical Research. 178: 431-42. PMID 22572618 DOI: 10.1016/j.jss.2012.03.052  0.52
2012 Buske FA, Bauer DC, Mattick JS, Bailey TL. Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data. Genome Research. 22: 1372-81. PMID 22550012 DOI: 10.1101/gr.130237.111  0.52
2012 Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS. Genome-wide analysis of long noncoding RNA stability. Genome Research. 22: 885-98. PMID 22406755 DOI: 10.1101/gr.131037.111  0.52
2012 Yang Q, Mattick JS, Orman MA, Nguyen TT, Ierapetritou MG, Berthiaume F, Androulakis IP. Dynamics of hepatic gene expression profile in a rat cecal ligation and puncture model. The Journal of Surgical Research. 176: 583-600. PMID 22381171 DOI: 10.1016/j.jss.2011.11.1031  0.52
2012 Mattick JS. RNA driving the epigenetic bus. The Embo Journal. 31: 515-6. PMID 22293829 DOI: 10.1038/emboj.2011.479  0.52
2012 Mercer TR, Gerhardt DJ, Dinger ME, Crawford J, Trapnell C, Jeddeloh JA, Mattick JS, Rinn JL. Targeted RNA sequencing reveals the deep complexity of the human transcriptome. Nature Biotechnology. 30: 99-104. PMID 22081020 DOI: 10.1038/nbt.2024  0.52
2011 Baillie JK, Barnett MW, Upton KR, Gerhardt DJ, Richmond TA, De Sapio F, Brennan PM, Rizzu P, Smith S, Fell M, Talbot RT, Gustincich S, Freeman TC, Mattick JS, Hume DA, et al. Somatic retrotransposition alters the genetic landscape of the human brain. Nature. 479: 534-7. PMID 22037309 DOI: 10.1038/nature10531  0.52
2011 Rackham O, Shearwood AM, Mercer TR, Davies SM, Mattick JS, Filipovska A. Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins. Rna (New York, N.Y.). 17: 2085-93. PMID 22028365 DOI: 10.1261/rna.029405.111  0.52
2011 Mattick JS, Clark MB. RNA lights up. Nature Biotechnology. 29: 883-4. PMID 21997629 DOI: 10.1038/nbt.2003  0.52
2011 Mattick JS. The double life of RNA. Biochimie. 93: viii-ix. PMID 21963144 DOI: 10.1016/S0300-9084(11)00355-5  0.52
2011 Thiagarajan RD, Cloonan N, Gardiner BB, Mercer TR, Kolle G, Nourbakhsh E, Wani S, Tang D, Krishnan K, Georgas KM, Rumballe BA, Chiu HS, Steen JA, Mattick JS, Little MH, et al. Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling. Bmc Genomics. 12: 441. PMID 21888672 DOI: 10.1186/1471-2164-12-441  0.52
2011 Sanchez MI, Mercer TR, Davies SM, Shearwood AM, NygÃ¥rd KK, Richman TR, Mattick JS, Rackham O, Filipovska A. RNA processing in human mitochondria. Cell Cycle (Georgetown, Tex.). 10: 2904-16. PMID 21857155 DOI: 10.4161/cc.10.17.17060  0.52
2011 Mercer TR, Neph S, Dinger ME, Crawford J, Smith MA, Shearwood AM, Haugen E, Bracken CP, Rackham O, Stamatoyannopoulos JA, Filipovska A, Mattick JS. The human mitochondrial transcriptome. Cell. 146: 645-58. PMID 21854988 DOI: 10.1016/j.cell.2011.06.051  0.52
2011 Faunes F, Sanchez N, Moreno M, Olivares GH, Lee-Liu D, Almonacid L, Slater AW, Norambuena T, Taft RJ, Mattick JS, Melo F, Larrain J. Expression of transposable elements in neural tissues during Xenopus development. Plos One. 6: e22569. PMID 21818339 DOI: 10.1371/journal.pone.0022569  0.52
2011 Taft RJ, Hawkins PG, Mattick JS, Morris KV. The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization. Epigenetics & Chromatin. 4: 13. PMID 21813016 DOI: 10.1186/1756-8935-4-13  0.52
2011 Dinger ME, Gascoigne DK, Mattick JS. The evolution of RNAs with multiple functions. Biochimie. 93: 2013-8. PMID 21802485 DOI: 10.1016/j.biochi.2011.07.018  0.52
2011 Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, ... ... Mattick JS, et al. The reality of pervasive transcription. Plos Biology. 9: e1000625; discussion. PMID 21765801 DOI: 10.1371/journal.pbio.1000625  0.52
2011 Fernandez-Valverde SL, Taft RJ, Mattick JS. MicroRNAs in β-cell biology, insulin resistance, diabetes and its complications. Diabetes. 60: 1825-31. PMID 21709277 DOI: 10.2337/db11-0171  0.52
2011 Mattick JS. Long noncoding RNAs in cell and developmental biology. Seminars in Cell & Developmental Biology. 22: 327. PMID 21621631 DOI: 10.1016/j.semcdb.2011.05.002  0.52
2011 Khaitan D, Dinger ME, Mazar J, Crawford J, Smith MA, Mattick JS, Perera RJ. The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion. Cancer Research. 71: 3852-62. PMID 21558391 DOI: 10.1158/0008-5472.CAN-10-4460  0.52
2011 Mattick JS. The central role of RNA in human development and cognition. Febs Letters. 585: 1600-16. PMID 21557942 DOI: 10.1016/j.febslet.2011.05.001  0.52
2011 Buske FA, Mattick JS, Bailey TL. Potential in vivo roles of nucleic acid triple-helices. Rna Biology. 8: 427-39. PMID 21525785 DOI: 10.4161/rna.8.3.14999  0.52
2011 Bredy TW, Lin Q, Wei W, Baker-Andresen D, Mattick JS. MicroRNA regulation of neural plasticity and memory. Neurobiology of Learning and Memory. 96: 89-94. PMID 21524708 DOI: 10.1016/j.nlm.2011.04.004  0.52
2011 Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL. MicroRNAs in the shoot apical meristem of soybean. Journal of Experimental Botany. 62: 2495-506. PMID 21504877 DOI: 10.1093/jxb/erq437  0.52
2011 Askarian-Amiri ME, Crawford J, French JD, Smart CE, Smith MA, Clark MB, Ru K, Mercer TR, Thompson ER, Lakhani SR, Vargas AC, Campbell IG, Brown MA, Dinger ME, Mattick JS. SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer. Rna (New York, N.Y.). 17: 878-91. PMID 21460236 DOI: 10.1261/rna.2528811  0.52
2011 Bracken CP, Szubert JM, Mercer TR, Dinger ME, Thomson DW, Mattick JS, Michael MZ, Goodall GJ. Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage. Nucleic Acids Research. 39: 5658-68. PMID 21427086 DOI: 10.1093/nar/gkr110  0.52
2011 Mattick JS. Genome-sequencing anniversary. The genomic foundation is shifting. Science (New York, N.Y.). 331: 874. PMID 21330534 DOI: 10.1126/science.1203703  0.52
2011 Clark MB, Mattick JS. Long noncoding RNAs in cell biology. Seminars in Cell & Developmental Biology. 22: 366-76. PMID 21256239 DOI: 10.1016/j.semcdb.2011.01.001  0.52
2011 Amaral PP, Clark MB, Gascoigne DK, Dinger ME, Mattick JS. lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Research. 39: D146-51. PMID 21112873 DOI: 10.1093/nar/gkq1138  0.52
2011 Mercer TR, Wilhelm D, Dinger ME, Soldà G, Korbie DJ, Glazov EA, Truong V, Schwenke M, Simons C, Matthaei KI, Saint R, Koopman P, Mattick JS. Expression of distinct RNAs from 3' untranslated regions. Nucleic Acids Research. 39: 2393-403. PMID 21075793 DOI: 10.1093/nar/gkq1158  0.52
2011 Mattick JS. RNA Networks as Digital Control Circuits of Nuclear Functions Genome Organization and Function in the Cell Nucleus. 353-363. DOI: 10.1002/9783527639991.ch14  0.52
2010 Mattick JS. The central role of RNA in the genetic programming of complex organisms. Anais Da Academia Brasileira De CiêNcias. 82: 933-9. PMID 21152768  0.52
2010 Mercer TR, Dinger ME, Bracken CP, Kolle G, Szubert JM, Korbie DJ, Askarian-Amiri ME, Gardiner BB, Goodall GJ, Grimmond SM, Mattick JS. Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome. Genome Research. 20: 1639-50. PMID 21045082 DOI: 10.1101/gr.112128.110  0.52
2010 Mattick JS. Linc-ing Long noncoding RNAs and enhancer function. Developmental Cell. 19: 485-6. PMID 20951339 DOI: 10.1016/j.devcel.2010.10.003  0.52
2010 Aung HT, Harrison DK, Findlay I, Mattick JS, Martin NG, Carroll BJ. Stringent programming of DNA methylation in humans. Twin Research and Human Genetics : the Official Journal of the International Society For Twin Studies. 13: 405-11. PMID 20874461 DOI: 10.1375/twin.13.5.405  0.52
2010 Fernandez-Valverde SL, Taft RJ, Mattick JS. Dynamic isomiR regulation in Drosophila development. Rna (New York, N.Y.). 16: 1881-8. PMID 20805289 DOI: 10.1261/rna.2379610  0.52
2010 Mattick J. Video Q&A: Non-coding RNAs and eukaryotic evolution - a personal view. Bmc Biology. 8: 67. PMID 20646265 DOI: 10.1186/1741-7007-8-67  0.52
2010 Taft RJ, Simons C, Nahkuri S, Oey H, Korbie DJ, Mercer TR, Holst J, Ritchie W, Wong JJ, Rasko JE, Rokhsar DS, Degnan BM, Mattick JS. Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. Nature Structural & Molecular Biology. 17: 1030-4. PMID 20622877 DOI: 10.1038/nsmb.1841  0.52
2010 Jung CH, Makunin IV, Mattick JS. Identification of conserved Drosophila-specific euchromatin-restricted non-coding sequence motifs. Genomics. 96: 154-66. PMID 20595017 DOI: 10.1016/j.ygeno.2010.05.006  0.52
2010 Mattick JS. RNA as the substrate for epigenome-environment interactions: RNA guidance of epigenetic processes and the expansion of RNA editing in animals underpins development, phenotypic plasticity, learning, and cognition. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 32: 548-52. PMID 20544741 DOI: 10.1002/bies.201000028  0.52
2010 Mazar J, Sinha S, Dinger ME, Mattick JS, Perera RJ. Protein-coding and non-coding gene expression analysis in differentiating human keratinocytes using a three-dimensional epidermal equivalent. Molecular Genetics and Genomics : Mgg. 284: 1-9. PMID 20499100 DOI: 10.1007/s00438-010-0543-6  0.52
2010 Lai J, Lehman ML, Dinger ME, Hendy SC, Mercer TR, Seim I, Lawrence MG, Mattick JS, Clements JA, Nelson CC. A variant of the KLK4 gene is expressed as a cis sense-antisense chimeric transcript in prostate cancer cells. Rna (New York, N.Y.). 16: 1156-66. PMID 20406994 DOI: 10.1261/rna.2019810  0.52
2010 Qureshi IA, Mattick JS, Mehler MF. Long non-coding RNAs in nervous system function and disease. Brain Research. 1338: 20-35. PMID 20380817 DOI: 10.1016/j.brainres.2010.03.110  0.52
2010 Mercer TR, Qureshi IA, Gokhan S, Dinger ME, Li G, Mattick JS, Mehler MF. Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation. Bmc Neuroscience. 11: 14. PMID 20137068 DOI: 10.1186/1471-2202-11-14  0.52
2010 Jung CH, Hansen MA, Makunin IV, Korbie DJ, Mattick JS. Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data. Bmc Genomics. 11: 77. PMID 20113528 DOI: 10.1186/1471-2164-11-77  0.52
2010 de Hoon MJ, Taft RJ, Hashimoto T, Kanamori-Katayama M, Kawaji H, Kawano M, Kishima M, Lassmann T, Faulkner GJ, Mattick JS, Daub CO, Carninci P, Kawai J, Suzuki H, Hayashizaki Y. Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Research. 20: 257-64. PMID 20051556 DOI: 10.1101/gr.095273.109  0.52
2010 Oldmeadow C, Mengersen K, Mattick JS, Keith JM. Multiple evolutionary rate classes in animal genome evolution. Molecular Biology and Evolution. 27: 942-53. PMID 19955480 DOI: 10.1093/molbev/msp299  0.52
2010 Mattick JS, Taft RJ, Faulkner GJ. A global view of genomic information--moving beyond the gene and the master regulator. Trends in Genetics : Tig. 26: 21-8. PMID 19944475 DOI: 10.1016/j.tig.2009.11.002  0.52
2010 Taft RJ, Pang KC, Mercer TR, Dinger M, Mattick JS. Non-coding RNAs: regulators of disease. The Journal of Pathology. 220: 126-39. PMID 19882673 DOI: 10.1002/path.2638  0.52
2010 Mattick JS. RNA as the substrate for epigenome-environment interactions (BioEssays) Bioessays. 32: 642. DOI: 10.1002/bies.201090026  0.52
2009 Mattick JS. Deconstructing the dogma: a new view of the evolution and genetic programming of complex organisms. Annals of the New York Academy of Sciences. 1178: 29-46. PMID 19845626 DOI: 10.1111/j.1749-6632.2009.04991.x  0.52
2009 Nahkuri S, Taft RJ, Mattick JS. Nucleosomes are preferentially positioned at exons in somatic and sperm cells. Cell Cycle (Georgetown, Tex.). 8: 3420-4. PMID 19823040  0.52
2009 Dinger ME, Amaral PP, Mercer TR, Mattick JS. Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications. Briefings in Functional Genomics & Proteomics. 8: 407-23. PMID 19770204 DOI: 10.1093/bfgp/elp038  0.52
2009 Amaral PP, Neyt C, Wilkins SJ, Askarian-Amiri ME, Sunkin SM, Perkins AC, Mattick JS. Complex architecture and regulated expression of the Sox2ot locus during vertebrate development. Rna (New York, N.Y.). 15: 2013-27. PMID 19767420 DOI: 10.1261/rna.1705309  0.52
2009 Taft RJ, Kaplan CD, Simons C, Mattick JS. Evolution, biogenesis and function of promoter-associated RNAs. Cell Cycle (Georgetown, Tex.). 8: 2332-8. PMID 19597344  0.52
2009 Mattick JS. Has evolution learnt how to learn? Embo Reports. 10: 665. PMID 19568258 DOI: 10.1038/embor.2009.135  0.52
2009 Pang KC, Dinger ME, Mercer TR, Malquori L, Grimmond SM, Chen W, Mattick JS. Genome-wide identification of long noncoding RNAs in CD8+ T cells. Journal of Immunology (Baltimore, Md. : 1950). 182: 7738-48. PMID 19494298 DOI: 10.4049/jimmunol.0900603  0.52
2009 Taft RJ, Glazov EA, Lassmann T, Hayashizaki Y, Carninci P, Mattick JS. Small RNAs derived from snoRNAs. Rna (New York, N.Y.). 15: 1233-40. PMID 19474147 DOI: 10.1261/rna.1528909  0.52
2009 Mattick JS. The genetic signatures of noncoding RNAs. Plos Genetics. 5: e1000459. PMID 19390609 DOI: 10.1371/journal.pgen.1000459  0.52
2009 Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, ... ... Mattick JS, et al. A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. Bmc Genomics. 10: 163. PMID 19379481 DOI: 10.1186/1471-2164-10-163  0.52
2009 Taft RJ, Glazov EA, Cloonan N, Simons C, Stephen S, Faulkner GJ, Lassmann T, Forrest AR, Grimmond SM, Schroder K, Irvine K, Arakawa T, Nakamura M, Kubosaki A, Hayashida K, ... ... Mattick JS, et al. Tiny RNAs associated with transcription start sites in animals. Nature Genetics. 41: 572-8. PMID 19377478 DOI: 10.1038/ng.312  0.52
2009 Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, ... ... Mattick JS, et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics. 41: 553-62. PMID 19377474 DOI: 10.1038/ng.375  0.52
2009 Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nature Reviews. Genetics. 10: 155-9. PMID 19188922 DOI: 10.1038/nrg2521  0.52
2009 Mattick JS, Amaral PP, Dinger ME, Mercer TR, Mehler MF. RNA regulation of epigenetic processes. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 31: 51-9. PMID 19154003 DOI: 10.1002/bies.080099  0.52
2009 Sunwoo H, Dinger ME, Wilusz JE, Amaral PP, Mattick JS, Spector DL. MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles. Genome Research. 19: 347-59. PMID 19106332 DOI: 10.1101/gr.087775.108  0.52
2009 Webster RJ, Giles KM, Price KJ, Zhang PM, Mattick JS, Leedman PJ. Regulation of epidermal growth factor receptor signaling in human cancer cells by microRNA-7. The Journal of Biological Chemistry. 284: 5731-41. PMID 19073608 DOI: 10.1074/jbc.M804280200  0.52
2009 Dinger ME, Pang KC, Mercer TR, Crowe ML, Grimmond SM, Mattick JS. NRED: a database of long noncoding RNA expression. Nucleic Acids Research. 37: D122-6. PMID 18829717 DOI: 10.1093/nar/gkn617  0.52
2009 Mattick J. Junk no more - Rnas get networking Australian Life Scientist. 6: 6-10.  0.52
2008 Dinger ME, Pang KC, Mercer TR, Mattick JS. Differentiating protein-coding and noncoding RNA: challenges and ambiguities. Plos Computational Biology. 4: e1000176. PMID 19043537 DOI: 10.1371/journal.pcbi.1000176  0.52
2008 Mercer TR, Dinger ME, Mariani J, Kosik KS, Mehler MF, Mattick JS. Noncoding RNAs in Long-Term Memory Formation. The Neuroscientist : a Review Journal Bringing Neurobiology, Neurology and Psychiatry. 14: 434-45. PMID 18997122 DOI: 10.1177/1073858408319187  0.52
2008 Amaral PP, Mattick JS. Noncoding RNA in development. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 19: 454-92. PMID 18839252 DOI: 10.1007/s00335-008-9136-7  0.52
2008 Korbie DJ, Mattick JS. Touchdown PCR for increased specificity and sensitivity in PCR amplification. Nature Protocols. 3: 1452-6. PMID 18772872 DOI: 10.1038/nprot.2008.133  0.52
2008 Nahkuri S, Taft RJ, Korbie DJ, Mattick JS. Molecular evolution of the HBII-52 snoRNA cluster. Journal of Molecular Biology. 381: 810-5. PMID 18616950 DOI: 10.1016/j.jmb.2008.06.057  0.52
2008 Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, Askarian-Amiri ME, Ru K, Soldà G, Simons C, Sunkin SM, Crowe ML, Grimmond SM, Perkins AC, Mattick JS. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Research. 18: 1433-45. PMID 18562676 DOI: 10.1101/gr.078378.108  0.52
2008 Keith JM, Adams P, Stephen S, Mattick JS. Delineating slowly and rapidly evolving fractions of the Drosophila genome. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 407-30. PMID 18435570 DOI: 10.1089/cmb.2007.0173  0.52
2008 Mattick JS, Mehler MF. RNA editing, DNA recoding and the evolution of human cognition. Trends in Neurosciences. 31: 227-33. PMID 18395806 DOI: 10.1016/j.tins.2008.02.003  0.52
2008 Dinger ME, Mercer TR, Mattick JS. RNAs as extracellular signaling molecules. Journal of Molecular Endocrinology. 40: 151-9. PMID 18372404 DOI: 10.1677/JME-07-0160  0.52
2008 Amaral PP, Dinger ME, Mercer TR, Mattick JS. The eukaryotic genome as an RNA machine. Science (New York, N.Y.). 319: 1787-9. PMID 18369136 DOI: 10.1126/science.1155472  0.52
2008 Mercer TR, Dinger ME, Sunkin SM, Mehler MF, Mattick JS. Specific expression of long noncoding RNAs in the mouse brain. Proceedings of the National Academy of Sciences of the United States of America. 105: 716-21. PMID 18184812 DOI: 10.1073/pnas.0706729105  0.52
2008 Stephen S, Pheasant M, Makunin IV, Mattick JS. Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock. Molecular Biology and Evolution. 25: 402-8. PMID 18056681 DOI: 10.1093/molbev/msm268  0.52
2007 Simons C, Makunin IV, Pheasant M, Mattick JS. Maintenance of transposon-free regions throughout vertebrate evolution. Bmc Genomics. 8: 470. PMID 18093339 DOI: 10.1186/1471-2164-8-470  0.52
2007 Makunin IV, Pheasant M, Simons C, Mattick JS. Orthologous microRNA genes are located in cancer-associated genomic regions in human and mouse. Plos One. 2: e1133. PMID 17989771 DOI: 10.1371/journal.pone.0001133  0.52
2007 Frith MC, Carninci P, Kai C, Kawai J, Bailey TL, Hayashizaki Y, Mattick JS. Splicing bypasses 3' end formation signals to allow complex gene architectures. Gene. 403: 188-93. PMID 17897791 DOI: 10.1016/j.gene.2007.08.012  0.52
2007 Pheasant M, Mattick JS. Raising the estimate of functional human sequences. Genome Research. 17: 1245-53. PMID 17690206 DOI: 10.1101/gr.6406307  0.52
2007 Mehler MF, Mattick JS. Noncoding RNAs and RNA editing in brain development, functional diversification, and neurological disease. Physiological Reviews. 87: 799-823. PMID 17615389 DOI: 10.1152/physrev.00036.2006  0.52
2007 Mattick JS. A new paradigm for developmental biology. The Journal of Experimental Biology. 210: 1526-47. PMID 17449818 DOI: 10.1242/jeb.005017  0.52
2007 Taft RJ, Pheasant M, Mattick JS. The relationship between non-protein-coding DNA and eukaryotic complexity. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 288-99. PMID 17295292 DOI: 10.1002/bies.20544  0.52
2007 Pang KC, Stephen S, Dinger ME, Engström PG, Lenhard B, Mattick JS. RNAdb 2.0--an expanded database of mammalian non-coding RNAs. Nucleic Acids Research. 35: D178-82. PMID 17145715 DOI: 10.1093/nar/gkl926  0.52
2007 Mattick JS. The human genome as an RNA machine Scientist. 21: 61-63.  0.52
2006 Glazov EA, Pheasant M, Nahkuri S, Mattick JS. Evidence for control of splicing by alternative RNA secondary structures in Dipteran homothorax pre-mRNA. Rna Biology. 3: 36-9. PMID 17114937  0.52
2006 Frith MC, Bailey TL, Kasukawa T, Mignone F, Kummerfeld SK, Madera M, Sunkara S, Furuno M, Bult CJ, Quackenbush J, Kai C, Kawai J, Carninci P, Hayashizaki Y, Pesole G, ... Mattick JS, et al. Discrimination of non-protein-coding transcripts from protein-coding mRNA. Rna Biology. 3: 40-8. PMID 17114936  0.52
2006 Leech AJ, Mattick JS. Effect of site-specific mutations in different phosphotransfer domains of the chemosensory protein ChpA on Pseudomonas aeruginosa motility. Journal of Bacteriology. 188: 8479-86. PMID 17012390 DOI: 10.1128/JB.00157-06  0.52
2006 Kenzelmann M, Rippe K, Mattick JS. RNA: Networks & Imaging. Molecular Systems Biology. 2: 44. PMID 16924265 DOI: 10.1038/msb4100086  0.52
2006 Mehler MF, Mattick JS. Non-coding RNAs in the nervous system. The Journal of Physiology. 575: 333-41. PMID 16809366 DOI: 10.1113/jphysiol.2006.113191  0.52
2006 Furuno M, Pang KC, Ninomiya N, Fukuda S, Frith MC, Bult C, Kai C, Kawai J, Carninci P, Hayashizaki Y, Mattick JS, Suzuki H. Clusters of internally primed transcripts reveal novel long noncoding RNAs. Plos Genetics. 2: e37. PMID 16683026 DOI: 10.1371/journal.pgen.0020037  0.52
2006 Mattick JS, Makunin IV. Non-coding RNA. Human Molecular Genetics. 15: R17-29. PMID 16651366 DOI: 10.1093/hmg/ddl046  0.52
2006 Stanley SM, Bailey TL, Mattick JS. GONOME: measuring correlations between GO terms and genomic positions. Bmc Bioinformatics. 7: 94. PMID 16504139 DOI: 10.1186/1471-2105-7-94  0.52
2006 Simons C, Pheasant M, Makunin IV, Mattick JS. Transposon-free regions in mammalian genomes. Genome Research. 16: 164-72. PMID 16365385 DOI: 10.1101/gr.4624306  0.52
2006 Ravasi T, Suzuki H, Pang KC, Katayama S, Furuno M, Okunishi R, Fukuda S, Ru K, Frith MC, Gongora MM, Grimmond SM, Hume DA, Hayashizaki Y, Mattick JS. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Research. 16: 11-9. PMID 16344565 DOI: 10.1101/gr.4200206  0.52
2006 Pang KC, Frith MC, Mattick JS. Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends in Genetics : Tig. 22: 1-5. PMID 16290135 DOI: 10.1016/j.tig.2005.10.003  0.52
2006 Hallinan JS, Bradley DR, Mattick JS, Wiles J. Effects of an RNA control layer on the state space of Boolean models of genetic regulatory networks 2006 Ieee Congress On Evolutionary Computation, Cec 2006. 2551-2555.  0.52
2005 Gagen MJ, Mattick JS. Inherent size constraints on prokaryote gene networks due to "accelerating" growth. Theory in Biosciences = Theorie in Den Biowissenschaften. 123: 381-411. PMID 18202872 DOI: 10.1016/j.thbio.2005.02.002  0.52
2005 Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, ... ... Mattick J, et al. Antisense transcription in the mammalian transcriptome. Science (New York, N.Y.). 309: 1564-6. PMID 16141073 DOI: 10.1126/science.1112009  0.52
2005 Mattick JS. The functional genomics of noncoding RNA. Science (New York, N.Y.). 309: 1527-8. PMID 16141063 DOI: 10.1126/science.1117806  0.52
2005 Gagen MJ, Mattick JS. Accelerating, hyperaccelerating, and decelerating networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 016123. PMID 16090052 DOI: 10.1103/PhysRevE.72.016123  0.52
2005 Frith MC, Pheasant M, Mattick JS. The amazing complexity of the human transcriptome. European Journal of Human Genetics : Ejhg. 13: 894-7. PMID 15970949 DOI: 10.1038/sj.ejhg.5201459  0.52
2005 Glazov EA, Pheasant M, McGraw EA, Bejerano G, Mattick JS. Ultraconserved elements in insect genomes: a highly conserved intronic sequence implicated in the control of homothorax mRNA splicing. Genome Research. 15: 800-8. PMID 15899965 DOI: 10.1101/gr.3545105  0.52
2005 Mattick JS, Makunin IV. Small regulatory RNAs in mammals. Human Molecular Genetics. 14: R121-32. PMID 15809264 DOI: 10.1093/hmg/ddi101  0.52
2005 Whitchurch CB, Beatson SA, Comolli JC, Jakobsen T, Sargent JL, Bertrand JJ, West J, Klausen M, Waite LL, Kang PJ, Tolker-Nielsen T, Mattick JS, Engel JN. Pseudomonas aeruginosa fimL regulates multiple virulence functions by intersecting with Vfr-modulated pathways. Molecular Microbiology. 55: 1357-78. PMID 15720546 DOI: 10.1111/j.1365-2958.2005.04479.x  0.52
2005 Mattick JS, Gagen MJ. Mathematics/computation. Accelerating networks. Science (New York, N.Y.). 307: 856-8. PMID 15705831 DOI: 10.1126/science.1103737  0.52
2005 Pang KC, Stephen S, Engström PG, Tajul-Arifin K, Chen W, Wahlestedt C, Lenhard B, Hayashizaki Y, Mattick JS. RNAdb--a comprehensive mammalian noncoding RNA database. Nucleic Acids Research. 33: D125-30. PMID 15608161 DOI: 10.1093/nar/gki089  0.52
2005 Mattick JS. What makes a human? Scientist. 19: 32-33.  0.52
2004 Mattick JS. The hidden genetic program of complex organisms. Scientific American. 291: 60-7. PMID 15487671  0.52
2004 Huang B, Ru K, Yuan Z, Whitchurch CB, Mattick JS. tonB3 is required for normal twitching motility and extracellular assembly of type IV pili. Journal of Bacteriology. 186: 4387-9. PMID 15205442 DOI: 10.1128/JB.186.13.4387-4389.2004  0.52
2004 Mattick JS. RNA regulation: a new genetics? Nature Reviews. Genetics. 5: 316-23. PMID 15131654 DOI: 10.1038/nrg1321  0.52
2004 Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D. Ultraconserved elements in the human genome. Science (New York, N.Y.). 304: 1321-5. PMID 15131266 DOI: 10.1126/science.1098119  0.52
2004 Whitchurch CB, Leech AJ, Young MD, Kennedy D, Sargent JL, Bertrand JJ, Semmler AB, Mellick AS, Martin PR, Alm RA, Hobbs M, Beatson SA, Huang B, Nguyen L, Commolli JC, ... ... Mattick JS, et al. Characterization of a complex chemosensory signal transduction system which controls twitching motility in Pseudomonas aeruginosa. Molecular Microbiology. 52: 873-93. PMID 15101991 DOI: 10.1111/j.1365-2958.2004.04026.x  0.52
2004 Yuan Z, Mattick JS, Teasdale RD. SVMtm: support vector machines to predict transmembrane segments. Journal of Computational Chemistry. 25: 632-6. PMID 14978706 DOI: 10.1002/jcc.10411  0.52
2004 Mattick JS. Digital RNA regulation of complex organisms Gene Therapy and Regulation. 2: 313-319. DOI: 10.1163/1568558043967517  0.52
2003 Huang B, Whitchurch CB, Mattick JS. FimX, a multidomain protein connecting environmental signals to twitching motility in Pseudomonas aeruginosa. Journal of Bacteriology. 185: 7068-76. PMID 14645265 DOI: 10.1128/JB.185.24.7068-7076.2003  0.52
2003 Mattick JS. Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 930-9. PMID 14505360 DOI: 10.1002/bies.10332  0.52
2003 Mattick JS. The human genome and the future of medicine. The Medical Journal of Australia. 179: 212-6. PMID 12914514  0.52
2003 Tajul-Arifin K, Teasdale R, Ravasi T, Hume DA, Mattick JS. Identification and analysis of chromodomain-containing proteins encoded in the mouse transcriptome. Genome Research. 13: 1416-29. PMID 12819141 DOI: 10.1101/gr.1015703  0.52
2003 Saunders NF, Thomas T, Curmi PM, Mattick JS, Kuczek E, Slade R, Davis J, Franzmann PD, Boone D, Rusterholtz K, Feldman R, Gates C, Bench S, Sowers K, Kadner K, et al. Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Research. 13: 1580-8. PMID 12805271 DOI: 10.1101/gr.1180903  0.52
2003 Nouwens AS, Beatson SA, Whitchurch CB, Walsh BJ, Schweizer HP, Mattick JS, Cordwell SJ. Proteome analysis of extracellular proteins regulated by the las and rhl quorum sensing systems in Pseudomonas aeruginosa PAO1. Microbiology (Reading, England). 149: 1311-22. PMID 12724392 DOI: 10.1099/mic.0.25967-0  0.52
2002 Mattick JS. Type IV pili and twitching motility. Annual Review of Microbiology. 56: 289-314. PMID 12142488 DOI: 10.1146/annurev.micro.56.012302.160938  0.52
2002 Whitchurch CB, Erova TE, Emery JA, Sargent JL, Harris JM, Semmler AB, Young MD, Mattick JS, Wozniak DJ. Phosphorylation of the Pseudomonas aeruginosa response regulator AlgR is essential for type IV fimbria-mediated twitching motility. Journal of Bacteriology. 184: 4544-54. PMID 12142425 DOI: 10.1128/JB.184.16.4544-4554.2002  0.52
2002 Mattick J. Profile of the Institute for Molecular Bioscience, University of Queensland. The International Journal of Developmental Biology. 46: 357-9. PMID 12141419  0.52
2002 Yuan Z, Burrage K, Mattick JS. Prediction of protein solvent accessibility using support vector machines. Proteins. 48: 566-70. PMID 12112679 DOI: 10.1002/prot.10176  0.52
2002 Guliani S, Polkinghorne I, Smith GA, Young P, Mattick JS, Mahony TJ. Macropodid herpesvirus 1 encodes genes for both thymidylate synthase and ICP34.5. Virus Genes. 24: 207-13. PMID 12086140 DOI: 10.1023/A:1015396430131  0.52
2002 Beatson SA, Whitchurch CB, Sargent JL, Levesque RC, Mattick JS. Differential regulation of twitching motility and elastase production by Vfr in Pseudomonas aeruginosa. Journal of Bacteriology. 184: 3605-13. PMID 12057955 DOI: 10.1128/JB.184.13.3605-3613.2002  0.52
2002 Beatson SA, Whitchurch CB, Semmler AB, Mattick JS. Quorum sensing is not required for twitching motility in Pseudomonas aeruginosa. Journal of Bacteriology. 184: 3598-604. PMID 12057954 DOI: 10.1128/JB.184.13.3598-3604.2002  0.52
2002 Utama B, Kennedy D, Ru K, Mattick JS. Isolation and characterization of a new nucleolar protein, Nrap, that is conserved from yeast to humans. Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 7: 115-32. PMID 11895476 DOI: 10.1046/j.1356-9597.2001.00507.x  0.52
2002 Whitchurch CB, Tolker-Nielsen T, Ragas PC, Mattick JS. Extracellular DNA required for bacterial biofilm formation. Science (New York, N.Y.). 295: 1487. PMID 11859186 DOI: 10.1126/science.295.5559.1487  0.52
2002 Mattick J. Are introns functional communicators? Today's Life Science. 14: 14-15.  0.52
2001 Kennedy D, French J, Guitard E, Ru K, Tocque B, Mattick J. Characterization of G3BPs: tissue specific expression, chromosomal localisation and rasGAP(120) binding studies. Journal of Cellular Biochemistry. 84: 173-87. PMID 11746526 DOI: 10.1002/jcb.1277  0.52
2001 Pantaleon M, Kanai-Azuma M, Mattick JS, Kaibuchi K, Kaye PL, Wood SA. FAM deubiquitylating enzyme is essential for preimplantation mouse embryo development. Mechanisms of Development. 109: 151-60. PMID 11731229 DOI: 10.1016/S0925-4773(01)00551-2  0.52
2001 Mattick JS. Non-coding RNAs: the architects of eukaryotic complexity. Embo Reports. 2: 986-91. PMID 11713189 DOI: 10.1093/embo-reports/kve230  0.52
2001 Mattick JS, Gagen MJ. The evolution of controlled multitasked gene networks: the role of introns and other noncoding RNAs in the development of complex organisms. Molecular Biology and Evolution. 18: 1611-30. PMID 11504843  0.52
2001 Ross BC, Czajkowski L, Hocking D, Margetts M, Webb E, Rothel L, Patterson M, Agius C, Camuglia S, Reynolds E, Littlejohn T, Gaeta B, Ng A, Kuczek ES, Mattick JS, et al. Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis. Vaccine. 19: 4135-42. PMID 11457538 DOI: 10.1016/S0264-410X(01)00173-6  0.52
2000 Huang B, Whitchurch CB, Croft L, Beatson SA, Mattick JS. A minimal tiling path cosmid library for functional analysis of the Pseudomonas aeruginosa PAO1 genome. Microbial & Comparative Genomics. 5: 189-203. PMID 11471833  0.52
2000 Croft L, Beatson SA, Whitchurch CB, Huang B, Blakeley RL, Mattick JS. An interactive web-based Pseudomonas aeruginosa genome database: discovery of new genes, pathways and structures. Microbiology (Reading, England). 146: 2351-64. PMID 11021912  0.52
2000 Semmler AB, Whitchurch CB, Leech AJ, Mattick JS. Identification of a novel gene, fimV, involved in twitching motility in Pseudomonas aeruginosa. Microbiology (Reading, England). 146: 1321-32. PMID 10846211  0.52
2000 Kanai-Azuma M, Mattick JS, Kaibuchi K, Wood SA. Co-localization of FAM and AF-6, the mammalian homologues of Drosophila faf and canoe, in mouse eye development. Mechanisms of Development. 91: 383-6. PMID 10704870 DOI: 10.1016/S0925-4773(99)00294-4  0.52
1999 Semmler AB, Whitchurch CB, Mattick JS. A re-examination of twitching motility in Pseudomonas aeruginosa. Microbiology (Reading, England). 145: 2863-73. PMID 10537208  0.52
1999 Comolli JC, Hauser AR, Waite L, Whitchurch CB, Mattick JS, Engel JN. Pseudomonas aeruginosa gene products PilT and PilU are required for cytotoxicity in vitro and virulence in a mouse model of acute pneumonia. Infection and Immunity. 67: 3625-30. PMID 10377148  0.52
1998 Taya S, Yamamoto T, Kano K, Kawano Y, Iwamatsu A, Tsuchiya T, Tanaka K, Kanai-Azuma M, Wood SA, Mattick JS, Kaibuchi K. The Ras target AF-6 is a substrate of the fam deubiquitinating enzyme. The Journal of Cell Biology. 142: 1053-62. PMID 9722616 DOI: 10.1083/jcb.142.4.1053  0.52
1997 Wood SA, Pascoe WS, Ru K, Yamada T, Hirchenhain J, Kemler R, Mattick JS. Cloning and expression analysis of a novel mouse gene with sequence similarity to the Drosophila fat facets gene. Mechanisms of Development. 63: 29-38. PMID 9178254 DOI: 10.1016/S0925-4773(97)00672-2  0.52
1996 Kennedy D, Wood SA, Ramsdale T, Tam PP, Steiner KA, Mattick JS. Identification of a mouse orthologue of the human ras-GAP-SH3-domain binding protein and structural confirmation that these proteins contain an RNA recognition motif. Biomedical Peptides, Proteins & Nucleic Acids : Structure, Synthesis & Biological Activity. 2: 93-9. PMID 9575347  0.52
1994 Spring KJ, Mattick JS, Don RH. Escherichia coli gpt as a positive and negative selectable marker in embryonal stem cells. Biochimica Et Biophysica Acta. 1218: 158-62. PMID 8018715 DOI: 10.1016/0167-4781(94)90005-1  0.52
1992 Abedinia M, Layfield R, Jones SM, Nixon PF, Mattick JS. Nucleotide and predicted amino acid sequence of a cDNA clone encoding part of human transketolase. Biochemical and Biophysical Research Communications. 183: 1159-66. PMID 1567394 DOI: 10.1016/S0006-291X(05)80312-2  0.52
1992 Lapsys NM, Layfield R, Baker E, Callen DF, Sutherland GR, Abedinia M, Nixon PF, Mattick JS. Chromosomal location of the human transketolase gene. Cytogenetics and Cell Genetics. 61: 274-5. PMID 1486804 DOI: 10.1159/000133421  0.52
1991 Patel P, Marrs CF, Mattick JS, Ruehl WW, Taylor RK, Koomey M. Shared antigenicity and immunogenicity of type 4 pilins expressed by Pseudomonas aeruginosa, Moraxella bovis, Neisseria gonorrhoaea, Dichelobacter nodosus, and Vibrio cholerae. Infection and Immunity. 59: 4674-6. PMID 1682267  0.52
1990 Gottesman S, Squires C, Pichersky E, Carrington M, Hobbs M, Mattick JS, Dalrymple B, Kuramitsu H, Shiroza T, Foster T. Conservation of the regulatory subunit for the Clp ATP-dependent protease in prokaryotes and eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 87: 3513-7. PMID 2185473  0.52
1990 Beard MK, Mattick JS, Moore LJ, Mott MR, Marrs CF, Egerton JR. Morphogenetic expression of Moraxella bovis fimbriae (pili) in Pseudomonas aeruginosa. Journal of Bacteriology. 172: 2601-7. PMID 1970564  0.52
1988 Hobbs M, Dalrymple B, Delaney SF, Mattick JS. Transcription of the fimbrial subunit gene and an associated transfer RNA gene of Pseudomonas aeruginosa. Gene. 62: 219-27. PMID 2452767 DOI: 10.1016/0378-1119(88)90560-4  0.52
1985 Groot Obbink DJ, Ritchie LJ, Cameron FH, Mattick JS, Ackerman VP. Construction of a gentamicin resistance gene probe for epidemiological studies. Antimicrobial Agents and Chemotherapy. 28: 96-102. PMID 2994560  0.52
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