Thomas G. Fazzio, Ph.D. - Publications

Affiliations: 
2004 University of Washington, Seattle, Seattle, WA 
Area:
Molecular Biology

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yin Q, Yang CH, Strelkova OS, Wu J, Sun Y, Gopalan S, Yang L, Dekker J, Fazzio TG, Li XZ, Gibcus J, Rando OJ. Revisiting chromatin packaging in mouse sperm. Genome Research. PMID 38129076 DOI: 10.1101/gr.277845.123  0.362
2022 Gopalan S, Fazzio TG. Multiomic chromatin and transcription profiling with EpiDamID. Cell Reports Methods. 2: 100219. PMID 35637908 DOI: 10.1016/j.crmeth.2022.100219  0.303
2022 Gura MA, Relovská S, Abt KM, Seymour KA, Wu T, Kaya H, Turner JMA, Fazzio TG, Freiman RN. TAF4b transcription networks regulating early oocyte differentiation. Development (Cambridge, England). PMID 35043944 DOI: 10.1242/dev.200074  0.363
2019 Tavera-Montañez C, Hainer SJ, Cangussu D, Gordon SJV, Xiao Y, Reyes-Gutierrez P, Imbalzano AN, Navea JG, Fazzio TG, Padilla-Benavides T. The classic metal-sensing transcription factor MTF1 promotes myogenesis in response to copper. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201901606R. PMID 31690123 DOI: 10.1096/Fj.201901606R  0.394
2019 Hainer SJ, Bošković A, McCannell KN, Rando OJ, Fazzio TG. Profiling of Pluripotency Factors in Single Cells and Early Embryos. Cell. PMID 30955888 DOI: 10.1016/J.Cell.2019.03.014  0.397
2018 Acharya D, Nera B, Milstone ZJ, Bourke L, Yoon Y, Rivera-Pérez JA, Trivedi CM, Fazzio TG. TIP55, a splice isoform of the KAT5 acetyltransferase, is essential for developmental gene regulation and organogenesis. Scientific Reports. 8: 14908. PMID 30297694 DOI: 10.1038/S41598-018-33213-4  0.477
2018 Yan J, Tie G, Wang S, Tutto A, DeMarco N, Khair L, Fazzio TG, Messina LM. Diabetes impairs wound healing by Dnmt1-dependent dysregulation of hematopoietic stem cells differentiation towards macrophages. Nature Communications. 9: 33. PMID 29295997 DOI: 10.1038/S41467-017-02425-Z  0.3
2017 Ee LS, McCannell KN, Tang Y, Fernandes N, Hardy WR, Green MR, Chu F, Fazzio TG. An Embryonic Stem Cell-Specific NuRD Complex Functions through Interaction with WDR5. Stem Cell Reports. PMID 28528697 DOI: 10.1016/J.Stemcr.2017.04.020  0.507
2017 Acharya D, Hainer SJ, Yoon Y, Wang F, Bach I, Rivera-Pérez JA, Fazzio TG. KAT-Independent Gene Regulation by Tip60 Promotes ESC Self-Renewal but Not Pluripotency. Cell Reports. 19: 671-679. PMID 28445719 DOI: 10.1016/J.Celrep.2017.04.001  0.489
2016 Hainer SJ, McCannell KN, Yu J, Ee LS, Zhu LJ, Rando OJ, Fazzio TG. DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells. Elife. 5. PMID 27849519 DOI: 10.7554/Elife.21964  0.462
2016 Hainer SJ, McCannell KN, Yu J, Ee L, Zhu LJ, Rando OJ, Fazzio TG. Author response: DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells Elife. DOI: 10.7554/Elife.21964.031  0.354
2015 Chen PB, Chen HV, Acharya D, Rando OJ, Fazzio TG. R loops regulate promoter-proximal chromatin architecture and cellular differentiation. Nature Structural & Molecular Biology. PMID 26551076 DOI: 10.1038/Nsmb.3122  0.457
2015 Hainer SJ, Fazzio TG. Regulation of Nucleosome Architecture and Factor Binding Revealed by Nuclease Footprinting of the ESC Genome. Cell Reports. 13: 61-9. PMID 26411677 DOI: 10.1016/J.Celrep.2015.08.071  0.534
2015 Hainer SJ, Gu W, Carone BR, Landry BD, Rando OJ, Mello CC, Fazzio TG. Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF. Genes & Development. 29: 362-78. PMID 25691467 DOI: 10.1101/Gad.253534.114  0.51
2014 Chen PB, Zhu LJ, Hainer SJ, McCannell KN, Fazzio TG. Unbiased chromatin accessibility profiling by RED-seq uncovers unique features of nucleosome variants in vivo. Bmc Genomics. 15: 1104. PMID 25494698 DOI: 10.1186/1471-2164-15-1104  0.477
2014 Carone BR, Hung JH, Hainer SJ, Chou MT, Carone DM, Weng Z, Fazzio TG, Rando OJ. High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm. Developmental Cell. 30: 11-22. PMID 24998598 DOI: 10.1016/J.Devcel.2014.05.024  0.486
2013 Chen PB, Hung JH, Hickman TL, Coles AH, Carey JF, Weng Z, Chu F, Fazzio TG. Hdac6 regulates Tip60-p400 function in stem cells. Elife. 2: e01557. PMID 24302573 DOI: 10.7554/Elife.01557  0.505
2013 Chen PB, Hung J, Hickman TL, Coles AH, Carey JF, Weng Z, Chu F, Fazzio TG. Author response: Hdac6 regulates Tip60-p400 function in stem cells Elife. DOI: 10.7554/Elife.01557.035  0.355
2012 Fazzio TG, Rando OJ. NURDs are required for diversity. The Embo Journal. 31: 3036-7. PMID 22580827 DOI: 10.1038/Emboj.2012.137  0.475
2011 Yildirim O, Li R, Hung JH, Chen PB, Dong X, Ee LS, Weng Z, Rando OJ, Fazzio TG. Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells. Cell. 147: 1498-510. PMID 22196727 DOI: 10.1016/J.Cell.2011.11.054  0.512
2010 Fazzio TG, Panning B. Control of embryonic stem cell identity by nucleosome remodeling enzymes. Current Opinion in Genetics & Development. 20: 500-4. PMID 20800472 DOI: 10.1016/J.Gde.2010.08.001  0.456
2010 Fazzio TG, Panning B. Condensin complexes regulate mitotic progression and interphase chromatin structure in embryonic stem cells. The Journal of Cell Biology. 188: 491-503. PMID 20176923 DOI: 10.1083/Jcb.200908026  0.521
2008 Fazzio TG, Huff JT, Panning B. Chromatin regulation Tip(60)s the balance in embryonic stem cell self-renewal. Cell Cycle (Georgetown, Tex.). 7: 3302-6. PMID 18948739 DOI: 10.4161/Cc.7.21.6928  0.56
2008 Fazzio TG, Huff JT, Panning B. An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity. Cell. 134: 162-74. PMID 18614019 DOI: 10.1016/J.Cell.2008.05.031  0.492
2007 Nusinow DA, Hernández-Muñoz I, Fazzio TG, Shah GM, Kraus WL, Panning B. Poly(ADP-ribose) polymerase 1 is inhibited by a histone H2A variant, MacroH2A, and contributes to silencing of the inactive X chromosome. The Journal of Biological Chemistry. 282: 12851-9. PMID 17322296 DOI: 10.1074/Jbc.M610502200  0.472
2005 Fazzio TG, Gelbart ME, Tsukiyama T. Two distinct mechanisms of chromatin interaction by the Isw2 chromatin remodeling complex in vivo. Molecular and Cellular Biology. 25: 9165-74. PMID 16227570 DOI: 10.1128/Mcb.25.21.9165-9174.2005  0.639
2004 Vary JC, Fazzio TG, Tsukiyama T. Assembly of yeast chromatin using ISWI complexes. Methods in Enzymology. 375: 88-102. PMID 14870661 DOI: 10.1016/S0076-6879(03)75006-X  0.619
2003 Fazzio TG, Tsukiyama T. Chromatin remodeling in vivo: evidence for a nucleosome sliding mechanism. Molecular Cell. 12: 1333-40. PMID 14636590 DOI: 10.1016/S1097-2765(03)00436-2  0.636
2003 Carey JF, Schultz SJ, Sisson L, Fazzio TG, Champoux JJ. DNA relaxation by human topoisomerase I occurs in the closed clamp conformation of the protein. Proceedings of the National Academy of Sciences of the United States of America. 100: 5640-5. PMID 12711735 DOI: 10.1073/Pnas.1031537100  0.309
2002 Kooperberg C, Fazzio TG, Delrow JJ, Tsukiyama T. Improved background correction for spotted DNA microarrays. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 55-66. PMID 11911795 DOI: 10.1089/10665270252833190  0.469
2001 Fazzio TG, Kooperberg C, Goldmark JP, Neal C, Basom R, Delrow J, Tsukiyama T. Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression. Molecular and Cellular Biology. 21: 6450-60. PMID 11533234 DOI: 10.1128/Mcb.21.19.6450-6460.2001  0.636
2000 Goldmark JP, Fazzio TG, Estep PW, Church GM, Tsukiyama T. The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p. Cell. 103: 423-33. PMID 11081629 DOI: 10.1016/S0092-8674(00)00134-3  0.636
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