| Year |
Citation |
Score |
| 2020 |
Kloosterman AM, Cimermancic P, Elsayed SS, Du C, Hadjithomas M, Donia MS, Fischbach MA, van Wezel GP, Medema MH. Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lantibiotics. Plos Biology. 18: e3001026. PMID 33351797 DOI: 10.1371/journal.pbio.3001026 |
0.32 |
|
| 2019 |
Xiong J, Yang W, Chen K, Jiang C, Ma Y, Chai X, Yan G, Wang G, Yuan D, Liu Y, Bidwell SL, Zafar N, Hadjithomas M, Krishnakumar V, Coyne RS, et al. Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena. Plos Biology. 17: e3000294. PMID 31158217 DOI: 10.1371/Journal.Pbio.3000294 |
0.404 |
|
| 2018 |
Seshadri R, Leahy SC, Attwood GT, Teh KH, Lambie SC, Cookson AL, Eloe-Fadrosh EA, Pavlopoulos GA, Hadjithomas M, Varghese NJ, Paez-Espino D, Perry R, Henderson G, Creevey CJ, et al. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection. Nature Biotechnology. PMID 29553575 DOI: 10.1038/Nbt.4110 |
0.384 |
|
| 2018 |
Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, et al. An integrated workflow for phenazine-modifying enzyme characterization. Journal of Industrial Microbiology & Biotechnology. PMID 29546662 DOI: 10.1007/S10295-018-2025-5 |
0.348 |
|
| 2017 |
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, et al. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology. PMID 28604660 DOI: 10.1038/Nbt.3886 |
0.438 |
|
| 2017 |
Jiao JY, Carro L, Liu L, Gao XY, Zhang XT, Hozzein WN, Lapidus A, Huntemann M, Reddy TB, Varghese N, Hadjithomas M, Ivanova NN, Göker M, Pillay M, Eisen JA, et al. Complete genome sequence of Jiangella gansuensis strain YIM 002(T) (DSM 44835(T)), the type species of the genus Jiangella and source of new antibiotic compounds. Standards in Genomic Sciences. 12: 21. PMID 28174619 DOI: 10.1186/S40793-017-0226-6 |
0.394 |
|
| 2016 |
Hadjithomas M, Chen IA, Chu K, Huang J, Ratner A, Palaniappan K, Andersen E, Markowitz V, Kyrpides NC, Ivanova NN. IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes. Nucleic Acids Research. PMID 27903896 DOI: 10.1093/Nar/Gkw1103 |
0.407 |
|
| 2016 |
Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, et al. Structure of the germline genome of Tetrahymenathermophila and relationship to the massively rearranged somatic genome. Elife. 5. PMID 27892853 DOI: 10.7554/Elife.19090 |
0.429 |
|
| 2016 |
Chen IA, Markowitz VM, Chu K, Palaniappan K, Szeto E, Pillay M, Ratner A, Huang J, Andersen E, Huntemann M, Varghese N, Hadjithomas M, Tennessen K, Nielsen T, Ivanova NN, et al. IMG/M: integrated genome and metagenome comparative data analysis system. Nucleic Acids Research. PMID 27738135 DOI: 10.1093/Nar/Gkw929 |
0.401 |
|
| 2016 |
Chen IM, Markowitz VM, Palaniappan K, Szeto E, Chu K, Huang J, Ratner A, Pillay M, Hadjithomas M, Huntemann M, Mikhailova N, Ovchinnikova G, Ivanova NN, Kyrpides NC. Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system. Bmc Genomics. 17: 307. PMID 27118214 DOI: 10.1186/S12864-016-2629-Y |
0.318 |
|
| 2016 |
Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, et al. Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes. Nature Communications. 7: 10147. PMID 26738725 DOI: 10.1038/Ncomms10147 |
0.341 |
|
| 2016 |
Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, et al. Author response: Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome Elife. DOI: 10.7554/Elife.19090.045 |
0.378 |
|
| 2015 |
Medema MH, Kottmann R, Yilmaz P, Cummings M, Biggins JB, Blin K, de Bruijn I, Chooi YH, Claesen J, Coates RC, Cruz-Morales P, Duddela S, Düsterhus S, Edwards DJ, Fewer DP, ... ... Hadjithomas M, et al. Minimum Information about a Biosynthetic Gene cluster. Nature Chemical Biology. 11: 625-31. PMID 26284661 DOI: 10.1038/Nchembio.1890 |
0.304 |
|
| 2015 |
Hadjithomas M, Chen IM, Chu K, Ratner A, Palaniappan K, Szeto E, Huang J, Reddy TB, Cimerman?i? P, Fischbach MA, Ivanova NN, Markowitz VM, Kyrpides NC, Pati A. IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites. Mbio. 6. PMID 26173699 DOI: 10.1128/Mbio.00932-15 |
0.427 |
|
| 2014 |
Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, et al. Total synthesis of a functional designer eukaryotic chromosome. Science (New York, N.Y.). 344: 55-8. PMID 24674868 DOI: 10.1126/Science.1249252 |
0.381 |
|
| 2011 |
Hadjithomas M, Moudrianakis EN. Experimental evidence for the role of domain swapping in the evolution of the histone fold. Proceedings of the National Academy of Sciences of the United States of America. 108: 13462-7. PMID 21813758 DOI: 10.1073/Pnas.1108649108 |
0.439 |
|
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