Ineke (L.J.) Braakman - Publications

Affiliations: 
Utrecht University, Utrecht, Netherlands 
Area:
bio-organic chemistry
Website:
http://profs.library.uu.nl/index.php/profrec/getprofdata/280/9/50/0

82 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Oliver KE, Rauscher R, Mijnders M, Wang W, Wolpert MJ, Maya J, Sabusap CM, Kesterson RA, Kirk KL, Rab A, Braakman I, Hong JS, Hartman JL, Ignatova Z, Sorscher EJ. Slowing ribosome velocity restores folding and function of mutant CFTR. The Journal of Clinical Investigation. PMID 31657788 DOI: 10.1172/Jci124282  0.332
2019 Schildknegt D, Lodder N, Pandey A, Egmond M, Pena F, Braakman I, van der Sluijs P. Characterization of CNPY5 and its family members. Protein Science : a Publication of the Protein Society. PMID 31050855 DOI: 10.1002/Pro.3635  0.408
2019 McCaul N, Yeoh HY, van Zadelhoff G, Lodder N, Kleizen B, Braakman I. Analysis of Protein Folding, Transport, and Degradation in Living Cells by Radioactive Pulse Chase. Journal of Visualized Experiments : Jove. PMID 30829321 DOI: 10.3791/58952  0.438
2017 Braakman I, Lamriben L, van Zadelhoff G, Hebert DN. Analysis of Disulfide Bond Formation. Current Protocols in Protein Science. 90: 14.1.1-14.1.21. PMID 29091273 DOI: 10.1002/Cpps.43  0.379
2017 Snapp EL, McCaul N, Quandte M, Cabartova Z, Bontjer I, Källgren C, Nilsson I, Land A, von Heijne G, Sanders RW, Braakman I. Structure and topology around the cleavage site regulate post-translational cleavage of the HIV-1 gp160 signal peptide. Elife. 6. PMID 28753126 DOI: 10.7554/Elife.26067  0.314
2017 Kirchner S, Cai Z, Rauscher R, Kastelic N, Anding M, Czech A, Kleizen B, Ostedgaard LS, Braakman I, Sheppard DN, Ignatova Z. Alteration of protein function by a silent polymorphism linked to tRNA abundance. Plos Biology. 15: e2000779. PMID 28510592 DOI: 10.1371/Journal.Pbio.2000779  0.351
2016 McCaffrey K, Braakman I. Protein quality control at the endoplasmic reticulum. Essays in Biochemistry. 60: 227-235. PMID 27744338 DOI: 10.1042/Ebc20160003  0.457
2016 Kakkar V, Kuiper EF, Pandey A, Braakman I, Kampinga HH. Versatile members of the DNAJ family show Hsp70 dependent anti-aggregation activity on RING1 mutant parkin C289G. Scientific Reports. 6: 34830. PMID 27713507 DOI: 10.1038/Srep34830  0.34
2016 Ellgaard L, McCaul N, Chatsisvili A, Braakman I. Co- and post-translational protein folding in the ER. Traffic (Copenhagen, Denmark). PMID 26947578 DOI: 10.1111/Tra.12392  0.46
2015 Li X, van Oers MM, Vlak JM, Braakman I. Folding of influenza virus hemagglutinin in insect cells is fast and efficient. Journal of Biotechnology. 203: 77-83. PMID 25828453 DOI: 10.1016/J.Jbiotec.2015.03.018  0.348
2014 Spiro S, McCaul N, Derking R, Alonzi D, Dwek R, Sanders R, Braakman I, Zitzmann N. Bypass of Quality Control in Protein Folding Pathways Induces Specific Misfolding of HIV Envelope V2 Loop: Implications for Iminosugars as Antivirals Aids Research and Human Retroviruses. 30: A49-A49. DOI: 10.1089/Aid.2014.5084.Abstract  0.326
2013 Koritzinsky M, Levitin F, van den Beucken T, Rumantir RA, Harding NJ, Chu KC, Boutros PC, Braakman I, Wouters BG. Two phases of disulfide bond formation have differing requirements for oxygen. The Journal of Cell Biology. 203: 615-27. PMID 24247433 DOI: 10.1083/Jcb.201307185  0.373
2013 Hansen RE, Otsu M, Braakman I, Winther JR. Quantifying Changes in the Cellular Thiol-Disulfide Status during Differentiation of B Cells into Antibody-Secreting Plasma Cells. International Journal of Cell Biology. 2013: 898563. PMID 24223594 DOI: 10.1155/2013/898563  0.422
2013 Oka OB, Pringle MA, Schopp IM, Braakman I, Bulleid NJ. ERdj5 is the ER reductase that catalyzes the removal of non-native disulfides and correct folding of the LDL receptor. Molecular Cell. 50: 793-804. PMID 23769672 DOI: 10.1016/J.Molcel.2013.05.014  0.448
2013 Kleizen B, Braakman I. Cell biology. A sweet send-off. Science (New York, N.Y.). 340: 930-1. PMID 23704559 DOI: 10.1126/Science.1239294  0.454
2013 Braakman I, Hebert DN. Protein folding in the endoplasmic reticulum. Cold Spring Harbor Perspectives in Biology. 5: a013201. PMID 23637286 DOI: 10.1101/Cshperspect.A013201  0.441
2013 Benham AM, van Lith M, Sitia R, Braakman I. Ero1-PDI interactions, the response to redox flux and the implications for disulfide bond formation in the mammalian endoplasmic reticulum. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20110403. PMID 23530257 DOI: 10.1098/Rstb.2011.0403  0.439
2013 Tabak HF, Braakman I, van der Zand A. Peroxisome formation and maintenance are dependent on the endoplasmic reticulum. Annual Review of Biochemistry. 82: 723-44. PMID 23414306 DOI: 10.1146/Annurev-Biochem-081111-125123  0.431
2012 van der Zand A, Gent J, Braakman I, Tabak HF. Biochemically distinct vesicles from the endoplasmic reticulum fuse to form peroxisomes. Cell. 149: 397-409. PMID 22500805 DOI: 10.1016/J.Cell.2012.01.054  0.433
2012 Koritzinsky M, Beucken TVd, Chu K, Boutros PC, Braakman I, Wouters BG. 355 Hypoxia Inhibits Disulfide Bond Formation And Protein Folding In The Endoplasmic Reticulum Radiotherapy and Oncology. 102. DOI: 10.1016/S0167-8140(12)70311-0  0.398
2011 Peters KW, Okiyoneda T, Balch WE, Braakman I, Brodsky JL, Guggino WB, Penland CM, Pollard HB, Sorscher EJ, Skach WR, Thomas PJ, Lukacs GL, Frizzell RA. CFTR Folding Consortium: methods available for studies of CFTR folding and correction. Methods in Molecular Biology (Clifton, N.J.). 742: 335-53. PMID 21547742 DOI: 10.1007/978-1-61779-120-8_20  0.368
2011 Braakman I, Bulleid NJ. Protein folding and modification in the mammalian endoplasmic reticulum. Annual Review of Biochemistry. 80: 71-99. PMID 21495850 DOI: 10.1146/Annurev-Biochem-062209-093836  0.471
2010 Hoelen H, Kleizen B, Schmidt A, Richardson J, Charitou P, Thomas PJ, Braakman I. The primary folding defect and rescue of ΔF508 CFTR emerge during translation of the mutant domain. Plos One. 5: e15458. PMID 21152102 DOI: 10.1371/Journal.Pone.0015458  0.311
2010 van der Zand A, Braakman I, Tabak HF. Peroxisomal membrane proteins insert into the endoplasmic reticulum. Molecular Biology of the Cell. 21: 2057-65. PMID 20427571 DOI: 10.1091/Mbc.E10-02-0082  0.401
2010 Christis C, Fullaondo A, Schildknegt D, Mkrtchian S, Heck AJ, Braakman I. Regulated increase in folding capacity prevents unfolded protein stress in the ER. Journal of Cell Science. 123: 787-94. PMID 20144991 DOI: 10.1242/Jcs.041111  0.413
2010 Pena F, Jansens A, van Zadelhoff G, Braakman I. Calcium as a crucial cofactor for low density lipoprotein receptor folding in the endoplasmic reticulum. The Journal of Biological Chemistry. 285: 8656-64. PMID 20089850 DOI: 10.1074/Jbc.M110.105718  0.328
2009 van Anken E, Pena F, Hafkemeijer N, Christis C, Romijn EP, Grauschopf U, Oorschot VM, Pertel T, Engels S, Ora A, Lástun V, Glockshuber R, Klumperman J, Heck AJ, Luban J, ... Braakman I, et al. Efficient IgM assembly and secretion require the plasma cell induced endoplasmic reticulum protein pERp1. Proceedings of the National Academy of Sciences of the United States of America. 106: 17019-24. PMID 19805154 DOI: 10.1073/Pnas.0903036106  0.413
2008 Sanders RW, Hsu ST, van Anken E, Liscaljet IM, Dankers M, Bontjer I, Land A, Braakman I, Bonvin AM, Berkhout B. Evolution rescues folding of human immunodeficiency virus-1 envelope glycoprotein GP120 lacking a conserved disulfide bond. Molecular Biology of the Cell. 19: 4707-16. PMID 18753405 DOI: 10.1091/Mbc.E08-07-0670  0.312
2008 Christis C, Lubsen NH, Braakman I. Protein folding includes oligomerization - examples from the endoplasmic reticulum and cytosol. The Febs Journal. 275: 4700-27. PMID 18680510 DOI: 10.1111/J.1742-4658.2008.06590.X  0.457
2008 Braakman I, Otsu M. Biochemistry. Cargo load reduction. Science (New York, N.Y.). 321: 499-500. PMID 18653871 DOI: 10.1126/Science.1162125  0.381
2008 van Anken E, Sanders RW, Liscaljet IM, Land A, Bontjer I, Tillemans S, Nabatov AA, Paxton WA, Berkhout B, Braakman I. Only five of 10 strictly conserved disulfide bonds are essential for folding and eight for function of the HIV-1 envelope glycoprotein. Molecular Biology of the Cell. 19: 4298-309. PMID 18653472 DOI: 10.1091/Mbc.E07-12-1282  0.386
2008 Tabak HF, van der Zand A, Braakman I. Peroxisomes: minted by the ER. Current Opinion in Cell Biology. 20: 393-400. PMID 18619829 DOI: 10.1016/J.Ceb.2008.05.008  0.344
2008 Sanders RW, van Anken E, Nabatov AA, Liscaljet IM, Bontjer I, Eggink D, Melchers M, Busser E, Dankers MM, Groot F, Braakman I, Berkhout B, Paxton WA. The carbohydrate at asparagine 386 on HIV-1 gp120 is not essential for protein folding and function but is involved in immune evasion. Retrovirology. 5: 10. PMID 18237398 DOI: 10.1186/1742-4690-5-10  0.342
2006 Tabak HF, Hoepfner D, Zand Av, Geuze HJ, Braakman I, Huynen MA. Formation of peroxisomes: present and past. Biochimica Et Biophysica Acta. 1763: 1647-54. PMID 17030445 DOI: 10.1016/J.Bbamcr.2006.08.045  0.323
2006 van der Zand A, Braakman I, Geuze HJ, Tabak HF. The return of the peroxisome. Journal of Cell Science. 119: 989-94. PMID 16525120 DOI: 10.1242/Jcs.02893  0.358
2006 Anken EV, Braakman I. Erratum: Versatility of the endoplasmic reticulum protein folding factory (Critical Reviews in Biochemistry and Molecular Biology) Critical Reviews in Biochemistry and Molecular Biology. 41. DOI: 10.1080/10409230600686470  0.377
2005 van Anken E, Braakman I. Endoplasmic reticulum stress and the making of a professional secretory cell. Critical Reviews in Biochemistry and Molecular Biology. 40: 269-83. PMID 16257827 DOI: 10.1080/10409230500315352  0.403
2005 Kleizen B, van Vlijmen T, de Jonge HR, Braakman I. Folding of CFTR is predominantly cotranslational. Molecular Cell. 20: 277-87. PMID 16246729 DOI: 10.1016/J.Molcel.2005.09.007  0.412
2005 van Anken E, Braakman I. Versatility of the endoplasmic reticulum protein folding factory. Critical Reviews in Biochemistry and Molecular Biology. 40: 191-228. PMID 16126486 DOI: 10.1080/10409230591008161  0.447
2005 Hoepfner D, Schildknegt D, Braakman I, Philippsen P, Tabak HF. Contribution of the endoplasmic reticulum to peroxisome formation. Cell. 122: 85-95. PMID 16009135 DOI: 10.1016/J.Cell.2005.04.025  0.46
2005 Romijn EP, Christis C, Wieffer M, Gouw JW, Fullaondo A, van der Sluijs P, Braakman I, Heck AJ. Expression clustering reveals detailed co-expression patterns of functionally related proteins during B cell differentiation: a proteomic study using a combination of one-dimensional gel electrophoresis, LC-MS/MS, and stable isotope labeling by amino acids in cell culture (SILAC). Molecular & Cellular Proteomics : McP. 4: 1297-310. PMID 15961381 DOI: 10.1074/Mcp.M500123-Mcp200  0.388
2005 Maggioni MC, Liscaljet IM, Braakman I. A critical step in the folding of influenza virus HA determined with a novel folding assay. Nature Structural & Molecular Biology. 12: 258-63. PMID 15696176 DOI: 10.1038/Nsmb897  0.413
2005 Maggioni C, Braakman I. Synthesis and quality control of viral membrane proteins. Current Topics in Microbiology and Immunology. 285: 175-98. PMID 15609504 DOI: 10.1007/3-540-26764-6_6  0.447
2004 Gent J, Braakman I. Low-density lipoprotein receptor structure and folding. Cellular and Molecular Life Sciences : Cmls. 61: 2461-70. PMID 15526154 DOI: 10.1007/S00018-004-4090-3  0.355
2004 Kleizen B, Braakman I. Protein folding and quality control in the endoplasmic reticulum. Current Opinion in Cell Biology. 16: 343-9. PMID 15261665 DOI: 10.1016/J.Ceb.2004.06.012  0.421
2003 Sitia R, Braakman I. Quality control in the endoplasmic reticulum protein factory. Nature. 426: 891-4. PMID 14685249 DOI: 10.1038/Nature02262  0.403
2003 van der Vlies D, Makkinje M, Jansens A, Braakman I, Verkleij AJ, Wirtz KW, Post JA. Oxidation of ER resident proteins upon oxidative stress: effects of altering cellular redox/antioxidant status and implications for protein maturation. Antioxidants & Redox Signaling. 5: 381-7. PMID 13678525 DOI: 10.1089/152308603768295113  0.364
2003 Jansens A, Braakman I. Pulse-chase labeling techniques for the analysis of protein maturation and degradation. Methods in Molecular Biology (Clifton, N.J.). 232: 133-45. PMID 12840546 DOI: 10.1385/1-59259-394-1:133  0.332
2003 Tabak HF, Murk JL, Braakman I, Geuze HJ. Peroxisomes start their life in the endoplasmic reticulum. Traffic (Copenhagen, Denmark). 4: 512-8. PMID 12839494 DOI: 10.1034/J.1600-0854.2003.00110.X  0.377
2003 Land A, Zonneveld D, Braakman I. Folding of HIV-1 envelope glycoprotein involves extensive isomerization of disulfide bonds and conformation-dependent leader peptide cleavage. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 17: 1058-67. PMID 12773488 DOI: 10.1096/Fj.02-0811Com  0.322
2003 van Anken E, Romijn EP, Maggioni C, Mezghrani A, Sitia R, Braakman I, Heck AJ. Sequential waves of functionally related proteins are expressed when B cells prepare for antibody secretion. Immunity. 18: 243-53. PMID 12594951 DOI: 10.1016/S1074-7613(03)00024-4  0.358
2002 Jansens A, van Duijn E, Braakman I. Coordinated nonvectorial folding in a newly synthesized multidomain protein. Science (New York, N.Y.). 298: 2401-3. PMID 12493918 DOI: 10.1126/Science.1078376  0.372
2001 Braakman I, Hebert DN. Analysis of disulfide bond formation. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit14.1. PMID 18429121 DOI: 10.1002/0471140864.Ps1401S03  0.377
2001 Mezghrani A, Fassio A, Benham A, Simmen T, Braakman I, Sitia R. Manipulation of oxidative protein folding and PDI redox state in mammalian cells. The Embo Journal. 20: 6288-96. PMID 11707400 DOI: 10.1093/Emboj/20.22.6288  0.404
2001 Land A, Braakman I. Folding of the human immunodeficiency virus type 1 envelope glycoprotein in the endoplasmic reticulum. Biochimie. 83: 783-90. PMID 11530211 DOI: 10.1016/S0300-9084(01)01314-1  0.435
2001 Braakman I. A novel lectin in the secretory pathway. An elegant mechanism for glycoprotein elimination. Embo Reports. 2: 666-8. PMID 11493593 DOI: 10.1093/Embo-Reports/Kve162  0.418
2000 Braakman I, van Anken E. Folding of viral envelope glycoproteins in the endoplasmic reticulum. Traffic (Copenhagen, Denmark). 1: 533-9. PMID 11208140 DOI: 10.1034/J.1600-0854.2000.010702.X  0.428
2000 Benham AM, Braakman I. Glycoprotein folding in the endoplasmic reticulum. Critical Reviews in Biochemistry and Molecular Biology. 35: 433-73. PMID 11202014 DOI: 10.1080/10409230091169258  0.425
2000 Benham AM, Cabibbo A, Fassio A, Bulleid N, Sitia R, Braakman I. The CXXCXXC motif determines the folding, structure and stability of human Ero1-Lalpha. The Embo Journal. 19: 4493-502. PMID 10970843 DOI: 10.1093/Emboj/19.17.4493  0.43
2000 Ermonval M, Duvet S, Zonneveld D, Cacan R, Buttin G, Braakman I. Truncated N-glycans affect protein folding in the ER of CHO-derived mutant cell lines without preventing calnexin binding. Glycobiology. 10: 77-87. PMID 10570226 DOI: 10.1093/Glycob/10.1.77  0.434
1999 Das AT, Land A, Braakman I, Klaver B, Berkhout B. HIV-1 evolves into a nonsyncytium-inducing virus upon prolonged culture in vitro. Virology. 263: 55-69. PMID 10544082 DOI: 10.1006/Viro.1999.9898  0.302
1999 Tabak HF, Braakman I, Distel B. Peroxisomes: simple in function but complex in maintenance. Trends in Cell Biology. 9: 447-53. PMID 10511709 DOI: 10.1016/S0962-8924(99)01650-5  0.325
1998 Hettema EH, Ruigrok CC, Koerkamp MG, van den Berg M, Tabak HF, Distel B, Braakman I. The cytosolic DnaJ-like protein djp1p is involved specifically in peroxisomal protein import. The Journal of Cell Biology. 142: 421-34. PMID 9679141 DOI: 10.1083/Jcb.142.2.421  0.424
1997 Zhang JX, Braakman I, Matlack KE, Helenius A. Quality control in the secretory pathway: the role of calreticulin, calnexin and BiP in the retention of glycoproteins with C-terminal truncations. Molecular Biology of the Cell. 8: 1943-54. PMID 9348535 DOI: 10.1091/Mbc.8.10.1943  0.444
1996 Braakman I, Zonneveld D, Land A, Hoftijzer J, Jacobs JJL. Folding Of Glycoproteins In The Endoplasmic Reticulum Biochemical Society Transactions. 24. DOI: 10.1042/Bst024627S  0.408
1995 Chen W, Helenius J, Braakman I, Helenius A. Cotranslational folding and calnexin binding during glycoprotein synthesis. Proceedings of the National Academy of Sciences of the United States of America. 92: 6229-33. PMID 7541532 DOI: 10.1073/Pnas.92.14.6229  0.361
1994 Hammond C, Braakman I, Helenius A. Role of N-linked oligosaccharide recognition, glucose trimming, and calnexin in glycoprotein folding and quality control. Proceedings of the National Academy of Sciences of the United States of America. 91: 913-7. PMID 8302866 DOI: 10.1073/Pnas.91.3.913  0.382
1993 Tatu U, Braakman I, Helenius A. Membrane glycoprotein folding, oligomerization and intracellular transport: effects of dithiothreitol in living cells. The Embo Journal. 12: 2151-7. PMID 8491203 DOI: 10.1002/J.1460-2075.1993.Tb05863.X  0.478
1993 de Silva A, Braakman I, Helenius A. Posttranslational folding of vesicular stomatitis virus G protein in the ER: involvement of noncovalent and covalent complexes. The Journal of Cell Biology. 120: 647-55. PMID 8381122 DOI: 10.1083/Jcb.120.3.647  0.409
1992 Helenius A, Marquardt T, Braakman I. The endoplasmic reticulum as a protein-folding compartment. Trends in Cell Biology. 2: 227-31. PMID 14731479 DOI: 10.1016/0962-8924(92)90309-B  0.454
1992 Braakman I, Helenius J, Helenius A. Manipulating disulfide bond formation and protein folding in the endoplasmic reticulum. The Embo Journal. 11: 1717-22. PMID 1582407 DOI: 10.1002/J.1460-2075.1992.Tb05223.X  0.388
1992 Braakman I, Helenius J, Helenius A. Role of ATP and disulphide bonds during protein folding in the endoplasmic reticulum. Nature. 356: 260-2. PMID 1552946 DOI: 10.1038/356260A0  0.448
1992 Helenius A, Marquardt T, Braakman I. The endoplasmic reticulum as a protein-folding compartment Trends in Cell Biology. 2: 227-231. DOI: 10.1016/0962-8924(92)90309-B  0.347
1992 Helenius A, Braakman I, Marquardt T, Tatu U. Protein folding and assembly in the endoplasmic reticulum Fresenius' Journal of Analytical Chemistry. 343: 10-11. DOI: 10.1007/Bf00331941  0.419
1991 Braakman I, Keij J, Hardonk MJ, Meijer DK, Groothuis GM. Separation of periportal and perivenous rat hepatocytes by fluorescence-activated cell sorting: confirmation with colloidal gold as an exogenous marker. Hepatology (Baltimore, Md.). 13: 73-82. PMID 1988347 DOI: 10.1002/Hep.1840130112  0.582
1991 Braakman I, Hoover-Litty H, Wagner KR, Helenius A. Folding of influenza hemagglutinin in the endoplasmic reticulum. The Journal of Cell Biology. 114: 401-11. PMID 1650370 DOI: 10.1083/Jcb.114.3.401  0.393
1989 Braakman I, Pijning T, Verest O, Weert B, Meijer DK, Groothuis GM. Vesicular uptake system for the cation lucigenin in the rat hepatocyte. Molecular Pharmacology. 36: 537-42. PMID 2811856  0.561
1989 Braakman I, Verest O, Pijning T, Meijer DK, Groothuis GM. Zonal distribution of the cation lucigenin in rat liver: influence of taurocholate. Molecular Pharmacology. 36: 532-6. PMID 2811855  0.561
1989 Braakman I, Groothuis GM, Meijer DK. Zonal compartmentation of perfused rat liver: plasma reappearance of rhodamine B explained. The Journal of Pharmacology and Experimental Therapeutics. 249: 869-73. PMID 2732948  0.551
1989 Thalhammer T, Gessl A, Braakman I, Graf J. Separation of hepatocytes of different acinar zones by flow cytometry. Cytometry. 10: 772-8. PMID 2582968 DOI: 10.1002/Cyto.990100615  0.33
1988 van der Sluijs P, Braakman I, Meijer DK, Groothuis GM. Heterogeneous acinar localization of the asialoglycoprotein internalization system in rat hepatocytes. Hepatology (Baltimore, Md.). 8: 1521-9. PMID 3192165 DOI: 10.1002/Hep.1840080609  0.591
1987 Braakman I, Groothuis GM, Meijer DK. Acinar redistribution and heterogeneity in transport of the organic cation rhodamine B in rat liver. Hepatology (Baltimore, Md.). 7: 849-55. PMID 3653851  0.557
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