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Yufeng J. Tseng, Ph.D. - Publications

Affiliations: 
2002 University of Illinois at Chicago, Health Sciences Center, Chicago, IL 60612, United States 
Area:
Pharmaceutical Chemistry
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Liu LC, Ho MY, Su BH, Wang SY, Hsu MT, Tseng YJ. PanGPCR: Predictions for Multiple Targets, Repurposing and Side Effects. Bioinformatics (Oxford, England). PMID 32915954 DOI: 10.1093/Bioinformatics/Btaa766  0.329
2020 Hsiao Y, Su BH, Tseng YJ. Current development of integrated web servers for preclinical safety and pharmacokinetics assessments in drug development. Briefings in Bioinformatics. PMID 32770190 DOI: 10.1093/Bib/Bbaa160  0.346
2020 Chen JH, Tseng YJ. Different molecular enumeration influences in deep learning: an example using aqueous solubility. Briefings in Bioinformatics. PMID 32501508 DOI: 10.1093/Bib/Bbaa092  0.356
2018 Lin FY, Esposito EX, Tseng YJ. LeadOp+R: Structure-Based Lead Optimization With Synthetic Accessibility. Frontiers in Pharmacology. 9: 96. PMID 29556192 DOI: 10.3389/Fphar.2018.00096  0.325
2017 Harn YC, Su BH, Ku YL, Lin OA, Chou CF, Tseng YJ. NP-StructurePredictor: prediction of unknown natural products in plant mixtures. Journal of Chemical Information and Modeling. PMID 29131618 DOI: 10.1021/Acs.Jcim.7B00565  0.339
2016 Hsu KH, Su BH, Tu YS, Lin OA, Tseng YJ. Mutagenicity in a Molecule: Identification of Core Structural Features of Mutagenicity Using a Scaffold Analysis. Plos One. 11: e0148900. PMID 26863515 DOI: 10.1371/Journal.Pone.0148900  0.364
2015 Esposito EX, Hopfinger AJ, Shao CY, Su BH, Chen SZ, Tseng YJ. Exploring possible mechanisms of action for the nanotoxicity and protein binding of decorated nanotubes: interpretation of physicochemical properties from optimal QSAR models. Toxicology and Applied Pharmacology. 288: 52-62. PMID 26200234 DOI: 10.1016/J.Taap.2015.07.008  0.546
2015 Su BH, Tu YS, Lin C, Shao CY, Lin OA, Tseng YJ. Rule-based Prediction Models of Cytochrome P450 Inhibition. Journal of Chemical Information and Modeling. PMID 26108525 DOI: 10.1021/Acs.Jcim.5B00130  0.432
2015 Su BH, Tu YS, Lin OA, Harn YC, Shen MY, Tseng YJ. Rule-based classification models of molecular autofluorescence. Journal of Chemical Information and Modeling. 55: 434-45. PMID 25625768 DOI: 10.1021/Ci5007432  0.377
2015 Shao CY, Su BH, Tu YS, Lin C, Lin OA, Tseng YJ. CypRules: a rule-based P450 inhibition prediction server. Bioinformatics (Oxford, England). 31: 1869-71. PMID 25617412 DOI: 10.1093/Bioinformatics/Btv043  0.351
2015 Esposito EX, Hopfinger AJ, Shao CY, Su BH, Chen SZ, Tseng YJ. Exploring possible mechanisms of action for the nanotoxicity and protein binding of decorated nanotubes: Interpretation of physicochemical properties from optimal QSAR models Toxicology and Applied Pharmacology. 288: 52-62. DOI: 10.1016/j.taap.2015.07.008  0.484
2013 Su BH, Huang YS, Chang CY, Tu YS, Tseng YJ. Template-based de novo design for type II kinase inhibitors and its extented application to acetylcholinesterase inhibitors. Molecules (Basel, Switzerland). 18: 13487-509. PMID 24184819 DOI: 10.3390/Molecules181113487  0.337
2013 Chang CY, Hsu MT, Esposito EX, Tseng YJ. Oversampling to overcome overfitting: exploring the relationship between data set composition, molecular descriptors, and predictive modeling methods. Journal of Chemical Information and Modeling. 53: 958-71. PMID 23464929 DOI: 10.1021/Ci4000536  0.5
2013 Shao CY, Chen SZ, Su BH, Tseng YJ, Esposito EX, Hopfinger AJ. Dependence of QSAR models on the selection of trial descriptor sets: a demonstration using nanotoxicity endpoints of decorated nanotubes. Journal of Chemical Information and Modeling. 53: 142-58. PMID 23252880 DOI: 10.1021/Ci3005308  0.623
2013 Wang KC, Wang SY, Kuo CH, Tseng YJ. Distribution-based classification method for baseline correction of metabolomic 1D proton nuclear magnetic resonance spectra. Analytical Chemistry. 85: 1231-9. PMID 23249210 DOI: 10.1021/Ac303233C  0.343
2012 Su BH, Tu YS, Esposito EX, Tseng YJ. Predictive toxicology modeling: protocols for exploring hERG classification and Tetrahymena pyriformis end point predictions. Journal of Chemical Information and Modeling. 52: 1660-73. PMID 22642982 DOI: 10.1021/Ci300060B  0.512
2012 Tseng YJ, Hopfinger AJ, Esposito EX. The great descriptor melting pot: mixing descriptors for the common good of QSAR models. Journal of Computer-Aided Molecular Design. 26: 39-43. PMID 22200979 DOI: 10.1007/S10822-011-9511-4  0.655
2011 Lin FY, Tseng YJ. Structure-based fragment hopping for lead optimization using predocked fragment database. Journal of Chemical Information and Modeling. 51: 1703-15. PMID 21627327 DOI: 10.1021/Ci200136J  0.353
2011 Shen MY, Su BH, Esposito EX, Hopfinger AJ, Tseng YJ. A comprehensive support vector machine binary hERG classification model based on extensive but biased end point hERG data sets. Chemical Research in Toxicology. 24: 934-49. PMID 21504223 DOI: 10.1021/Tx200099J  0.678
2010 Su BH, Shen MY, Esposito EX, Hopfinger AJ, Tseng YJ. In silico binary classification QSAR models based on 4D-fingerprints and MOE descriptors for prediction of hERG blockage. Journal of Chemical Information and Modeling. 50: 1304-18. PMID 20565102 DOI: 10.1021/Ci100081J  0.682
2008 Zheng T, Hopfinger AJ, Esposito EX, Liu J, Tseng YJ. Membrane-interaction quantitative structure--activity relationship (MI-QSAR) analyses of skin penetration enhancers. Journal of Chemical Information and Modeling. 48: 1238-56. PMID 18507373 DOI: 10.1021/Ci8000277  0.699
2008 Liu J, Kern PS, Gerberick GF, Santos-Filho OA, Esposito EX, Hopfinger AJ, Tseng YJ. Categorical QSAR models for skin sensitization based on local lymph node assay measures and both ground and excited state 4D-fingerprint descriptors. Journal of Computer-Aided Molecular Design. 22: 345-66. PMID 18338230 DOI: 10.1007/S10822-008-9190-Y  0.682
2007 Li Y, Pan D, Liu J, Kern PS, Gerberick GF, Hopfinger AJ, Tseng YJ. Categorical QSAR Models for skin sensitization based upon local lymph node assay classification measures part 2: 4D-fingerprint three-state and two-2-state logistic regression models. Toxicological Sciences : An Official Journal of the Society of Toxicology. 99: 532-44. PMID 17675333 DOI: 10.1093/Toxsci/Kfm185  0.76
2007 Iyer M, Zheng T, Hopfinger AJ, Tseng YJ. QSAR analyses of skin penetration enhancers. Journal of Chemical Information and Modeling. 47: 1130-49. PMID 17472334 DOI: 10.1021/Ci700051E  0.749
2007 Iyer M, Tseng YJ, Senese CL, Liu J, Hopfinger AJ. Prediction and mechanistic interpretation of human oral drug absorption using MI-QSAR analysis. Molecular Pharmaceutics. 4: 218-31. PMID 17397237 DOI: 10.1021/Mp0600900  0.705
2007 Li Y, Tseng YJ, Pan D, Liu J, Kern PS, Gerberick GF, Hopfinger AJ. 4D-fingerprint categorical QSAR models for skin sensitization based on the classification of local lymph node assay measures. Chemical Research in Toxicology. 20: 114-28. PMID 17226934 DOI: 10.1021/Tx6002535  0.772
2004 Senese CL, Duca J, Pan D, Hopfinger AJ, Tseng YJ. 4D-fingerprints, universal QSAR and QSPR descriptors. Journal of Chemical Information and Computer Sciences. 44: 1526-39. PMID 15446810 DOI: 10.1021/Ci049898S  0.732
2004 Pan D, Liu J, Senese C, Hopfinger AJ, Tseng Y. Characterization of a ligand-receptor binding event using receptor-dependent four-dimensional quantitative structure-activity relationship analysis. Journal of Medicinal Chemistry. 47: 3075-88. PMID 15163189 DOI: 10.1021/Jm030586A  0.688
2003 Liu J, Pan D, Tseng Y, Hopfinger AJ. 4D-QSAR analysis of a series of antifungal p450 inhibitors and 3D-pharmacophore comparisons as a function of alignment. Journal of Chemical Information and Computer Sciences. 43: 2170-9. PMID 14632469 DOI: 10.1021/Ci034142Z  0.768
2003 Pan D, Tseng Y, Hopfinger AJ. Quantitative structure-based design: formalism and application of receptor-dependent RD-4D-QSAR analysis to a set of glucose analogue inhibitors of glycogen phosphorylase. Journal of Chemical Information and Computer Sciences. 43: 1591-607. PMID 14502494 DOI: 10.1021/Ci0340714  0.733
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