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Stephen J. Small, Ph.D. - Publications

Affiliations: 
Biology New York University, New York, NY, United States 
Area:
morphogen gradients, patterning, enhancers, transcription
Website:
http://biology.as.nyu.edu/object/StephenSmall
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55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bishop TR, Onal P, Xu Z, Zheng M, Gunasinghe H, Nien CY, Small S, Datta RR. Multi-level regulation of even-skipped stripes by the ubiquitous factor Zelda. Development (Cambridge, England). PMID 37934130 DOI: 10.1242/dev.201860  0.854
2022 Kim YJ, Rhee K, Liu J, Jeammet P, Turner MA, Small SJ, Garcia HG. Predictive modeling reveals that higher-order cooperativity drives transcriptional repression in a synthetic developmental enhancer. Elife. 11. PMID 36503705 DOI: 10.7554/eLife.73395  0.408
2021 Onal P, Imaya Gunasinghe H, Yui Umezawa K, Zheng M, Ling J, Azeez L, Dalmeus A, Tazin T, Small S. Suboptimal Intermediates Underlie Evolution of the Bicoid Homeodomain. Molecular Biology and Evolution. PMID 33599280 DOI: 10.1093/molbev/msab051  0.439
2020 Small S, Arnosti DN. Transcriptional Enhancers in . Genetics. 216: 1-26. PMID 32878914 DOI: 10.1534/Genetics.120.301370  0.707
2019 Ling J, Umezawa KY, Scott T, Small S. Bicoid-Dependent Activation of the Target Gene hunchback Requires a Two-Motif Sequence Code in a Specific Basal Promoter. Molecular Cell. PMID 31402096 DOI: 10.1016/J.Molcel.2019.06.038  0.481
2018 Liu Q, Onal P, Datta RR, Rogers JM, Schmidt-Ott U, Bulyk ML, Small S, Thornton JW. Ancient mechanisms for the evolution of the bicoid homeodomain's function in fly development. Elife. 7. PMID 30298815 DOI: 10.7554/Elife.34594  0.825
2018 Datta RR, Ling J, Kurland J, Ren X, Xu Z, Yucel G, Moore J, Shokri L, Baker I, Bishop T, Struffi P, Levina R, Bulyk ML, Johnston RJ, Small S. A feed-forward relay integrates the regulatory activities of Bicoid and Orthodenticle via sequential binding to suboptimal sites. Genes & Development. PMID 29764918 DOI: 10.1101/Gad.311985.118  0.795
2018 Liu Q, Onal P, Datta RR, Rogers JM, Schmidt-Ott U, Bulyk ML, Small S, Thornton JW. Author response: Ancient mechanisms for the evolution of the bicoid homeodomain's function in fly development Elife. DOI: 10.7554/Elife.34594.023  0.756
2017 Yan J, Anderson C, Viets K, Tran S, Goldberg G, Small S, Johnston RJ. Regulatory logic driving stable levels of defective proventriculus expression during terminal photoreceptor specification in flies. Development (Cambridge, England). PMID 28126841 DOI: 10.1242/Dev.144030  0.476
2016 Wessels HH, Imami K, Baltz AG, Kolinksi M, Beldovskaya A, Selbach M, Small S, Ohler U, Landthaler M. The mRNA-bound proteome of the early fly embryo. Genome Research. PMID 27197210 DOI: 10.1101/Gr.200386.115  0.46
2015 Briscoe J, Small S. Morphogen rules: design principles of gradient-mediated embryo patterning. Development (Cambridge, England). 142: 3996-4009. PMID 26628090 DOI: 10.1242/Dev.129452  0.458
2014 Xu Z, Chen H, Ling J, Yu D, Struffi P, Small S. Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila. Genes & Development. 28: 608-21. PMID 24637116 DOI: 10.1101/Gad.234534.113  0.763
2012 Chen H, Xu Z, Mei C, Yu D, Small S. A system of repressor gradients spatially organizes the boundaries of Bicoid-dependent target genes. Cell. 149: 618-29. PMID 22541432 DOI: 10.1016/J.Cell.2012.03.018  0.768
2011 Struffi P, Corado M, Kaplan L, Yu D, Rushlow C, Small S. Combinatorial activation and concentration-dependent repression of the Drosophila even skipped stripe 3+7 enhancer. Development (Cambridge, England). 138: 4291-9. PMID 21865322 DOI: 10.1242/Dev.065987  0.819
2011 Datta RR, Small S. Gene regulation: piecing together the puzzle of enhancer evolution. Current Biology : Cb. 21: R542-3. PMID 21783031 DOI: 10.1016/J.Cub.2011.06.026  0.804
2009 Ochoa-Espinosa A, Yu D, Tsirigos A, Struffi P, Small S. Anterior-posterior positional information in the absence of a strong Bicoid gradient. Proceedings of the National Academy of Sciences of the United States of America. 106: 3823-8. PMID 19237583 DOI: 10.1073/Pnas.0807878105  0.832
2008 Yu D, Small S. Precise registration of gene expression boundaries by a repressive morphogen in Drosophila. Current Biology : Cb. 18: 868-76. PMID 18571415 DOI: 10.1016/J.Cub.2008.05.050  0.663
2007 Brent AE, Yucel G, Small S, Desplan C. Permissive and instructive anterior patterning rely on mRNA localization in the wasp embryo. Science (New York, N.Y.). 315: 1841-3. PMID 17395827 DOI: 10.1126/Science.1137528  0.735
2007 Yucel G, Small SJ. The role of bicoid target genes in anterior patterning in Drosophila Developmental Biology. 306: 408. DOI: 10.1016/J.Ydbio.2007.03.625  0.73
2007 Yucel G, Small SJ. WITHDRAWN: The role of bicoid target genes in anterior patterning in Drosophila Developmental Biology. DOI: 10.1016/J.Ydbio.2007.03.441  0.73
2007 Yu D, Small S. Quantitative dissection of a repressive morphogen gradient Developmental Biology. 306: 345. DOI: 10.1016/J.Ydbio.2007.03.199  0.544
2006 Ochoa-Espinosa A, Small S. Developmental mechanisms and cis-regulatory codes. Current Opinion in Genetics & Development. 16: 165-70. PMID 16503128 DOI: 10.1016/J.Gde.2006.02.014  0.814
2006 Yucel G, Small S. Morphogens: precise outputs from a variable gradient. Current Biology : Cb. 16: R29-31. PMID 16401416 DOI: 10.1016/J.Cub.2005.12.005  0.708
2006 Yu D, Small S. Hunchback target genes are patterned by two different mechanisms in the early Drosophila embryo Developmental Biology. 295: 449. DOI: 10.1016/J.Ydbio.2006.04.385  0.658
2006 Yucel G, Small SJ. The role of Giant in anterior patterning in Drosophila melanogaster Developmental Biology. 295: 449. DOI: 10.1016/J.Ydbio.2006.04.383  0.691
2005 Oberstein A, Pare A, Kaplan L, Small S. Site-specific transgenesis by Cre-mediated recombination in Drosophila. Nature Methods. 2: 583-5. PMID 16094382 DOI: 10.1038/Nmeth775  0.365
2005 Pultz MA, Westendorf L, Gale SD, Hawkins K, Lynch J, Pitt JN, Reeves NL, Yao JC, Small S, Desplan C, Leaf DS. A major role for zygotic hunchback in patterning the Nasonia embryo. Development (Cambridge, England). 132: 3705-15. PMID 16077090 DOI: 10.1242/Dev.01939  0.503
2005 Ochoa-Espinosa A, Yucel G, Kaplan L, Pare A, Pura N, Oberstein A, Papatsenko D, Small S. The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 102: 4960-5. PMID 15793007 DOI: 10.1073/Pnas.0500373102  0.821
2004 Andrioli LP, Oberstein AL, Corado MS, Yu D, Small S. Groucho-dependent repression by sloppy-paired 1 differentially positions anterior pair-rule stripes in the Drosophila embryo. Developmental Biology. 276: 541-51. PMID 15581884 DOI: 10.1016/J.Ydbio.2004.09.025  0.816
2004 Hemavathy K, Hu X, Ashraf SI, Small SJ, Ip YT. The repressor function of snail is required for Drosophila gastrulation and is not replaceable by Escargot or Worniu. Developmental Biology. 269: 411-20. PMID 15110709 DOI: 10.1016/J.Ydbio.2004.01.029  0.769
2003 Clyde DE, Corado MS, Wu X, Paré A, Papatsenko D, Small S. A self-organizing system of repressor gradients establishes segmental complexity in Drosophila. Nature. 426: 849-53. PMID 14685241 DOI: 10.1038/Nature02189  0.825
2002 Andrioli LP, Vasisht V, Theodosopoulou E, Oberstein A, Small S. Anterior repression of a Drosophila stripe enhancer requires three position-specific mechanisms. Development (Cambridge, England). 129: 4931-40. PMID 12397102  0.84
2002 Zhao C, York A, Yang F, Forsthoefel DJ, Dave V, Fu D, Zhang D, Corado MS, Small S, Seeger MA, Ma J. The activity of the Drosophila morphogenetic protein Bicoid is inhibited by a domain located outside its homeodomain. Development (Cambridge, England). 129: 1669-80. PMID 11923203  0.813
2001 Wu X, Vasisht V, Kosman D, Reinitz J, Small S. Thoracic patterning by the Drosophila gap gene hunchback. Developmental Biology. 237: 79-92. PMID 11518507 DOI: 10.1006/Dbio.2001.0355  0.834
2000 Small S. In vivo analysis of lacZ fusion genes in transgenic Drosophila melanogaster Methods in Enzymology. 326: 146-154. PMID 11036640 DOI: 10.1016/S0076-6879(00)26052-7  0.568
1998 Nibu Y, Zhang H, Bajor E, Barolo S, Small S, Levine M. dCtBP mediates transcriptional repression by Knirps, Krüppel and Snail in the Drosophila embryo. The Embo Journal. 17: 7009-20. PMID 9843507 DOI: 10.1093/Emboj/17.23.7009  0.799
1998 Wu X, Vakani R, Small S. Two distinct mechanisms for differential positioning of gene expression borders involving the Drosophila gap protein giant Development. 125: 3765-3774. PMID 9729485  0.508
1998 Kosman D, Small S, Reinitz J. Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins. Development Genes and Evolution. 208: 290-4. PMID 9683745 DOI: 10.1007/S004270050184  0.618
1997 Kosman D, Small S. Concentration-dependent patterning by an ectopic expression domain of the Drosophila gap gene knirps Development. 124: 1343-1354. PMID 9118805  0.462
1996 Small S, Blair A, Levine M. Regulation of two pair-rule stripes by a single enhancer in the Drosophila embryo Developmental Biology. 175: 314-324. PMID 8626035 DOI: 10.1006/Dbio.1996.0117  0.664
1996 Yan R, Small S, Desplan C, Dearolf CR, Darnell JE. Identification of a Stat gene that functions in Drosophila development. Cell. 84: 421-30. PMID 8608596 DOI: 10.1016/S0092-8674(00)81287-8  0.512
1996 Arnosti DN, Barolo S, Levine M, Small S. The eve stripe 2 enhancer employs multiple modes of transcriptional synergy. Development (Cambridge, England). 122: 205-14. PMID 8565831  0.831
1993 Reyes AA, Schulte SV, Small S, Akeson R. Distinct NCAM splicing events are differentially regulated during rat brain development Molecular Brain Research. 17: 201-211. PMID 8510495 DOI: 10.1016/0169-328X(93)90003-8  0.316
1993 Small S, Arnosti DN, Levine M. Spacing ensures autonomous expression of different stripe enhancers in the even-skipped promoter. Development (Cambridge, England). 119: 762-72. PMID 8187640  0.739
1992 Small S, Blair A, Levine M. Regulation of even-skipped stripe 2 in the Drosophila embryo Embo Journal. 11: 4047-4057. PMID 1327756  0.514
1992 Jiang J, Rushlow CA, Zhou Q, Small S, Levine M. Individual dorsal morphogen binding sites mediate activation and repression in the Drosophila embryo. The Embo Journal. 11: 3147-54. PMID 1322296  0.782
1992 Ip YT, Levine M, Small SJ. The bicoid and dorsal morphogens use a similar strategy to make stripes in the Drosophila embryo. Journal of Cell Science. Supplement. 16: 33-8. PMID 1297650 DOI: 10.1242/Jcs.1992.Supplement_16.5  0.794
1992 Small S, Blair A, Levine M. Regulation of even-skipped stripe 2 in the Drosophila embryo. The Embo Journal. 11: 4047-4057. DOI: 10.1002/J.1460-2075.1992.Tb05498.X  0.68
1992 Jiang J, Rushlow C, Zhou Q, Small S, Levine M. Individual dorsal morphogen binding sites mediate activation and repression in the Drosophila embryo. The Embo Journal. 11: 3147-3154. DOI: 10.1002/J.1460-2075.1992.Tb05387.X  0.649
1991 Small S, Kraut R, Hoey T, Warrior R, Levine M. Transcriptional regulation of a pair-rule stripe in Drosophila. Genes & Development. 5: 827-39. PMID 2026328 DOI: 10.1101/Gad.5.5.827  0.844
1991 Reyes AA, Small SJ, Akeson R. At least 27 alternatively spliced forms of the neural cell adhesion molecule mRNA are expressed during rat heart development. Molecular and Cellular Biology. 11: 1654-61. PMID 1996115 DOI: 10.1128/Mcb.11.3.1654  0.36
1991 Small S, Levine M. The initiation of pair-rule stripes in the Drosophila blastoderm Current Opinion in Genetics and Development. 1: 255-260. PMID 1822273 DOI: 10.1016/S0959-437X(05)80079-6  0.538
1991 Stanojevic D, Small S, Levine M. Regulation of a segmentation stripe by overlapping activators and repressors in the Drosophila embryo. Science (New York, N.Y.). 254: 1385-7. PMID 1683715 DOI: 10.1126/Science.1683715  0.679
1990 Small SJ, Akeson R. Expression of the unique NCAM VASE exon is independently regulated in distinct tissues during development. The Journal of Cell Biology. 111: 2089-96. PMID 1699951 DOI: 10.1083/Jcb.111.5.2089  0.391
1988 Small SJ, Haines SL, Akeson RA. Polypeptide variation in an N-CAM extracellular immunoglobulin-like fold is developmentally regulated through alternative splicing. Neuron. 1: 1007-17. PMID 2483093 DOI: 10.1016/0896-6273(88)90158-4  0.306
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