Donald Y. Kobayashi - Publications

Affiliations: 
Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Molecular Biology, Microbiology Biology, Plant Pathology Agriculture

46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Patel N, Patel RD, Wyenandt A, Kobayashi DY. First Report of causing Bacterial Leaf Spot on Romaine lettuce () and escarole () in New Jersey. Plant Disease. PMID 34236210 DOI: 10.1094/PDIS-05-21-0929-PDN  0.366
2019 Patel N, Kobayashi DY, Noto AJ, Baldwin AC, Simon JE, Wyenandt CA. First Report of Pseudomonas cichorii Causing Bacterial Leaf Spot on Sweet Basil (Ocimum basilicum) in New Jersey Plant Disease. 103: 2666-2666. DOI: 10.1094/Pdis-04-19-0895-Pdn  0.494
2016 Permpornsakul P, Prasongsuk S, Lotrakul P, Eveleigh DE, Kobayashi DY, Wu SH, Imai T, Punnapayak H. Two new records of the resupinate polypore fungi, Ceriporia cystidiata and Macrohyporia dictyopora, in Thailand Scienceasia. 42: 171-177. DOI: 10.2306/Scienceasia1513-1874.2016.42.171  0.327
2016 Saraihom S, Kobayashi DY, Lotrakul P, Prasongsuk S, Eveleigh DE, Punnapayak H. First report of a tropical Lysobacter enzymogenes producing bifunctional endoglucanase activity towards carboxymethylcellulose and chitosan Annals of Microbiology. 66: 907-919. DOI: 10.1007/S13213-015-1170-6  0.407
2015 de Bruijn I, Cheng X, de Jager V, Expósito RG, Watrous J, Patel N, Postma J, Dorrestein PC, Kobayashi D, Raaijmakers JM. Comparative genomics and metabolic profiling of the genus Lysobacter. Bmc Genomics. 16: 991. PMID 26597042 DOI: 10.1186/S12864-015-2191-Z  0.382
2013 Mathioni SM, Patel N, Riddick B, Sweigard JA, Czymmek KJ, Caplan JL, Kunjeti SG, Kunjeti S, Raman V, Hillman BI, Kobayashi DY, Donofrio NM. Transcriptomics of the rice blast fungus Magnaporthe oryzae in response to the bacterial antagonist Lysobacter enzymogenes reveals candidate fungal defense response genes. Plos One. 8: e76487. PMID 24098512 DOI: 10.1371/Journal.Pone.0076487  0.494
2013 Patel N, Oudemans PV, Hillman BI, Kobayashi DY. Use of the tetrazolium salt MTT to measure cell viability effects of the bacterial antagonist Lysobacter enzymogenes on the filamentous fungus Cryphonectria parasitica. Antonie Van Leeuwenhoek. 103: 1271-80. PMID 23529159 DOI: 10.1007/S10482-013-9907-3  0.366
2013 Kidarsa TA, Shaffer BT, Goebel NC, Roberts DP, Buyer JS, Johnson A, Kobayashi DY, Zabriskie TM, Paulsen I, Loper JE. Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS. Environmental Microbiology. 15: 716-35. PMID 23297839 DOI: 10.1111/1462-2920.12066  0.404
2013 Bartos W, Chen R, Kobayashi DY, Meers PR. Studies on the Membrane-Active Behavior of Outer Membrane Vesicles from a Gram Negative Bacterium Biophysical Journal. 104: 90a-91a. DOI: 10.1016/J.Bpj.2012.11.541  0.311
2012 Loper JE, Hassan KA, Mavrodi DV, Davis EW, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL, Breakwell K, Henkels MD, Tetu SG, Rangel LI, Kidarsa TA, Wilson NL, ... ... Kobayashi DY, et al. Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. Plos Genetics. 8: e1002784. PMID 22792073 DOI: 10.1371/Journal.Pgen.1002784  0.486
2009 Kobayashi DY, Crouch JA. Bacterial/Fungal interactions: from pathogens to mutualistic endosymbionts. Annual Review of Phytopathology. 47: 63-82. PMID 19400650 DOI: 10.1146/Annurev-Phyto-080508-081729  0.301
2009 Ma J, Kobayashi DY, Yee N. Role of menaquinone biosynthesis genes in selenate reduction by Enterobacter cloacae SLD1a-1 and Escherichia coli K12. Environmental Microbiology. 11: 149-58. PMID 18811645 DOI: 10.1111/J.1462-2920.2008.01749.X  0.435
2009 Roberts DP, Baker CJ, McKenna L, Liu S, Buyer JS, Kobayashi DY. Influence of host seed on metabolic activity of Enterobacter cloacae in the spermosphere Soil Biology and Biochemistry. 41: 754-761. DOI: 10.1016/J.Soilbio.2009.01.010  0.334
2008 Yee N, Kobayashi DY. Molecular genetics of selenate reduction by Enterobacter cloacae SLD1a-1. Advances in Applied Microbiology. 64: 107-23, 2 p followin. PMID 18485282 DOI: 10.1016/S0065-2164(08)00403-6  0.304
2007 Loper JE, Kobayashi DY, Paulsen IT. The Genomic Sequence of Pseudomonas fluorescens Pf-5: Insights Into Biological Control. Phytopathology. 97: 233-8. PMID 18944380 DOI: 10.1094/Phyto-97-2-0233  0.396
2007 Ma J, Kobayashi DY, Yee N. Chemical kinetic and molecular genetic study of selenium oxyanion reduction by Enterobacter cloacae SLD1a-1. Environmental Science & Technology. 41: 7795-801. PMID 18075090 DOI: 10.1021/Es0712672  0.395
2007 Yee N, Ma J, Dalia A, Boonfueng T, Kobayashi DY. Se(VI) reduction and the precipitation of Se(0) by the facultative bacterium Enterobacter cloacae SLD1a-1 are regulated by FNR. Applied and Environmental Microbiology. 73: 1914-20. PMID 17261520 DOI: 10.1128/Aem.02542-06  0.451
2007 Kobayashi DY, Yuen GY. The potential of Lysobacter spp. as bacterial biological control agents for plant diseases Cab Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 2. DOI: 10.1079/PAVSNNR20072007  0.402
2006 Paulsen IT, Press CM, Ravel J, Kobayashi DY, Myers GSA, Mavrodi DV, DeBoy RT, Seshadri R, Ren Q, Madupu R, Dodson RJ, Durkin AS, Brinkac LM, Daugherty SC, Sullivan SA, et al. Corrigendum: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5 Nature Biotechnology. 24: 466. DOI: 10.1038/Nbt0406-466B  0.34
2005 Palumbo JD, Yuen GY, Jochum CC, Tatum K, Kobayashi DY. Mutagenesis of beta-1,3-Glucanase Genes in Lysobacter enzymogenes Strain C3 Results in Reduced Biological Control Activity Toward Bipolaris Leaf Spot of Tall Fescue and Pythium Damping-Off of Sugar Beet. Phytopathology. 95: 701-7. PMID 18943787 DOI: 10.1094/Phyto-95-0701  0.519
2005 Kobayashi DY, Yuen GY. The role of clp-regulated factors in antagonism against Magnaporthe poae and biological control of summer patch disease of Kentucky bluegrass by Lysobacter enzymogenes C3. Canadian Journal of Microbiology. 51: 719-23. PMID 16234871 DOI: 10.1139/W05-056  0.506
2005 Paulsen IT, Press CM, Ravel J, Kobayashi DY, Myers GS, Mavrodi DV, DeBoy RT, Seshadri R, Ren Q, Madupu R, Dodson RJ, Durkin AS, Brinkac LM, Daugherty SC, Sullivan SA, et al. Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nature Biotechnology. 23: 873-8. PMID 15980861 DOI: 10.1038/Nbt1110  0.405
2005 Kobayashi DY, Reedy RM, Palumbo JD, Zhou JM, Yuen GY. A clp gene homologue belonging to the Crp gene family globally regulates lytic enzyme production, antimicrobial activity, and biological control activity expressed by Lysobacter enzymogenes strain C3. Applied and Environmental Microbiology. 71: 261-9. PMID 15640196 DOI: 10.1128/Aem.71.1.261-269.2005  0.698
2004 Li HM, Sullivan R, Moy M, Kobayashi DY, Belanger FC. Expression of a novel chitinase by the fungal endophyte in Poa ampla. Mycologia. 96: 526-36. PMID 21148875 DOI: 10.1080/15572536.2005.11832951  0.422
2004 Fogg ML, Reedy RM, Kobayashi DY, Johnston SA, Kline WL. Occurrence of bacterial blight of fenugreek caused by Pseudomonas syringae pv. syringae and isolation of the pathogen from infested seed Canadian Journal of Plant Pathology. 26: 129-133.  0.713
2003 Palumbo JD, Sullivan RF, Kobayashi DY. Molecular characterization and expression in Escherichia coli of three beta-1,3-glucanase genes from Lysobacter enzymogenes strain N4-7. Journal of Bacteriology. 185: 4362-70. PMID 12867444 DOI: 10.1128/Jb.185.15.4362-4370.2003  0.387
2003 Sullivan RF, Holtman MA, Zylstra GJ, White JF, Kobayashi DY. Taxonomic positioning of two biological control agents for plant diseases as Lysobacter enzymogenes based on phylogenetic analysis of 16S rDNA, fatty acid composition and phenotypic characteristics Journal of Applied Microbiology. 94: 1079-1086. PMID 12752818 DOI: 10.1046/J.1365-2672.2003.01932.X  0.416
2002 Lohrke SM, Dery PD, Li W, Reedy R, Kobayashi DY, Roberts DR. Mutation of rpiA in Enterobacter cloacae decreases seed and root colonization and biocontrol of damping-off caused by Pythium ultimum on cucumber. Molecular Plant-Microbe Interactions : Mpmi. 15: 817-25. PMID 12182339 DOI: 10.1094/Mpmi.2002.15.8.817  0.713
2002 Kobayashi DY, Reedy RM, Bick J, Oudemans PV. Characterization of a chitinase gene from Stenotrophomonas maltophilia strain 34S1 and its involvement in biological control. Applied and Environmental Microbiology. 68: 1047-54. PMID 11872449 DOI: 10.1128/Aem.68.3.1047-1054.2002  0.709
2001 Braun PG, Hildebrand PD, Ells TC, Kobayashi DY. Evidence and characterization of a gene cluster required for the production of viscosin, a lipopeptide biosurfactant, by a strain of pseudomonas fluorescens Canadian Journal of Microbiology. 47: 294-301. PMID 11358168 DOI: 10.1139/W01-017  0.439
1999 Sreedhar L, Kobayashi DY, Bunting TE, Hillman BI, Belanger FC. Fungal proteinase expression in the interaction of the plant pathogen Magnaporthe poae with its host Gene. 235: 121-129. PMID 10415340 DOI: 10.1016/S0378-1119(99)00201-2  0.383
1999 Roberts DP, Dery PD, Yucel I, Buyer J, Holtman MA, Kobayashi DY. Role of pfkA and general carbohydrate catabolism in seed colonization by Enterobacter cloacae Applied and Environmental Microbiology. 65: 2513-2519. PMID 10347036 DOI: 10.1128/Aem.65.6.2513-2519.1999  0.523
1999 Roberts DP, Kobayashi DY, Dery PD, Short NM. An image analysis method for determination of spatial colonization patterns of bacteria in plant rhizosphere Applied Microbiology and Biotechnology. 51: 653-658. DOI: 10.1007/S002530051446  0.354
1999 Kobayashi DY, Palumbo JD, Holtman MA. Potential for Use of Stenotrophomonas maltophilia and a Related Bacterial Species for the Control of Soilborne Turfgrass Diseases Acs Symposium Series. 743: 353-362.  0.31
1997 Thompson DC, Kobayashi DY, Clarke BB. Suppression of summer patch by rhizosphere competent bacteria and their establishment on Kentucky bluegrass Soil Biology and Biochemistry. 30: 257-263. DOI: 10.1016/S0038-0717(97)00114-4  0.38
1997 Holtman MA, Kobayashi DY. Identification of Rhodococcus erythropolis isolates capable of degrading the fungicide carbendazim Applied Microbiology and Biotechnology. 47: 578-582. DOI: 10.1007/S002530050976  0.401
1996 Gould AB, Kobayashi DY, Bergen MS. Identification of bacteria for biological control of Botrytis cinerea on petunia using a petal disk assay Plant Disease. 80: 1029-1033. DOI: 10.1094/Pd-80-1029  0.516
1996 Thompson DC, Clarke BB, Kobayashi DY. Evaluation of bacterial antagonists for reduction of summer patch symptoms in Kentucky bluegrass Plant Disease. 80: 856-862. DOI: 10.1094/Pd-80-0856  0.484
1996 Kobayashi DY, El-Barrad NEH. Selection of bacterial antagonists using enrichment cultures for the control of summer patch disease in Kentucky bluegrass Current Microbiology. 32: 106-110. DOI: 10.1007/S002849900019  0.368
1995 Kobayashi DY, Guglielmoni M, Clarke BB. Isolation of the chitinolytic bacteria Xanthomonas maltophilia and Serratia marcescens as biological control agents for summer patch disease of turfgrass Soil Biology and Biochemistry. 27: 1479-1487. DOI: 10.1016/0038-0717(95)00062-J  0.368
1991 Tamaki SJ, Kobayashi DY, Keen NT. Sequence domains required for the activity of avirulence genes avrB and avrC from Pseudomonas syringae pv. glycinea Journal of Bacteriology. 173: 301-307. PMID 1987121 DOI: 10.1128/Jb.173.1.301-307.1991  0.412
1990 Kobayashi DY, Tamaki SJ, Keen NT. Molecular characterization of avirulence gene D from Pseudomonas syringae pv. tomato Molecular Plant-Microbe Interactions : Mpmi. 3: 94-102. PMID 2132028 DOI: 10.1094/Mpmi-3-094  0.413
1990 Kobayashi DY, Tamaki SJ, Trollinger DJ, Gold S, Keen NT. A gene from Pseudomonas syringae pv. glycinea with homology to avirulence gene D from P. s. pv. tomato but devoid of the avirulence phenotype Molecular Plant-Microbe Interactions : Mpmi. 3: 103-111. PMID 2132025 DOI: 10.1094/Mpmi-3-103  0.377
1989 Kobayashi DY, Tamaki SJ, Keen NT. Cloned avirulence genes from the tomato pathogen Pseudomonas syringae pv. tomato confer cultivar specificity on soybean. Proceedings of the National Academy of Sciences of the United States of America. 86: 157-161. PMID 16578838 DOI: 10.1073/Pnas.86.1.157  0.416
1989 Keen NT, Tamaki S, Kobayashi D, Trollinger D. Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria. Gene. 70: 191-7. PMID 2853689 DOI: 10.1016/0378-1119(88)90117-5  0.351
1988 Manulis S, Kobayashi DY, Keen NT. Molecular cloning and sequencing of a pectate lyase gene from Yersinia pseudotuberculosis Journal of Bacteriology. 170: 1825-1830. PMID 2832382 DOI: 10.1128/Jb.170.4.1825-1830.1988  0.421
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