Year |
Citation |
Score |
2021 |
Pirogov A, Pfaffelhuber P, Börsch-Haubold A, Haubold B. High-complexity regions in mammalian genomes are enriched for developmental genes. Bioinformatics (Oxford, England). PMID 34529758 DOI: 10.1093/bioinformatics/btab639 |
0.302 |
|
2021 |
Haubold B, Klötzl F. Fast Phylogeny Reconstruction from Genomes of Closely Related Microbes. Methods in Molecular Biology (Clifton, N.J.). 2242: 77-89. PMID 33961219 DOI: 10.1007/978-1-0716-1099-2_6 |
0.389 |
|
2021 |
Haubold B, Klötzl F, Hellberg L, Thompson D, Cavalar M. Fur: Find Unique Genomic Regions for Diagnostic PCR. Bioinformatics (Oxford, England). PMID 33515232 DOI: 10.1093/bioinformatics/btab059 |
0.335 |
|
2019 |
Klötzl F, Haubold B. Phylonium: Fast Estimation of Evolutionary Distances from Large Samples of Similar Genomes. Bioinformatics (Oxford, England). PMID 31790149 DOI: 10.1093/Bioinformatics/Btz903 |
0.531 |
|
2019 |
Lynch M, Haubold B, Pfaffelhuber P, Maruki T. Inference of Historical Population-Size Changes with Allele-Frequency Data. G3 (Bethesda, Md.). PMID 31699776 DOI: 10.1534/G3.119.400854 |
0.36 |
|
2018 |
Pirogov A, Pfaffelhuber P, Börsch-Haubold A, Haubold B. High-Complexity Regions in Mammalian Genomes are Enriched for Developmental Genes. Bioinformatics (Oxford, England). PMID 30395202 DOI: 10.1093/Bioinformatics/Bty922 |
0.515 |
|
2016 |
Klötzl F, Haubold B. Support Values for Genome Phylogenies. Life (Basel, Switzerland). 6. PMID 26959064 DOI: 10.3390/Life6010011 |
0.547 |
|
2015 |
Haubold B, Klötzl F, Pfaffelhuber P. andi: fast and accurate estimation of evolutionary distances between closely related genomes. Bioinformatics (Oxford, England). 31: 1169-75. PMID 25504847 DOI: 10.1093/Bioinformatics/Btu815 |
0.471 |
|
2014 |
Lynch M, Xu S, Maruki T, Jiang X, Pfaffelhuber P, Haubold B. Genome-wide linkage-disequilibrium profiles from single individuals. Genetics. 198: 269-81. PMID 24948778 DOI: 10.1534/Genetics.114.166843 |
0.457 |
|
2014 |
Börsch-Haubold AG, Montero I, Konrad K, Haubold B. Genome-wide quantitative analysis of histone H3 lysine 4 trimethylation in wild house mouse liver: environmental change causes epigenetic plasticity. Plos One. 9: e97568. PMID 24849289 DOI: 10.1371/Journal.Pone.0097568 |
0.343 |
|
2014 |
Haubold B. Alignment-free phylogenetics and population genetics. Briefings in Bioinformatics. 15: 407-18. PMID 24291823 DOI: 10.1093/Bib/Bbt083 |
0.507 |
|
2013 |
Haubold B, Krause L, Horn T, Pfaffelhuber P. An alignment-free test for recombination. Bioinformatics (Oxford, England). 29: 3121-7. PMID 24064419 DOI: 10.1093/Bioinformatics/Btt550 |
0.436 |
|
2013 |
McCann HC, Rikkerink EH, Bertels F, Fiers M, Lu A, Rees-George J, Andersen MT, Gleave AP, Haubold B, Wohlers MW, Guttman DS, Wang PW, Straub C, Vanneste JL, Vanneste J, et al. Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease. Plos Pathogens. 9: e1003503. PMID 23935484 DOI: 10.1371/Journal.Ppat.1003503 |
0.461 |
|
2012 |
Haubold B, Pfaffelhuber P. Alignment-free population genomics: an efficient estimator of sequence diversity. G3 (Bethesda, Md.). 2: 883-9. PMID 22908037 DOI: 10.1534/G3.112.002527 |
0.548 |
|
2011 |
Domazet-Lošo M, Haubold B. Alignment-free detection of horizontal gene transfer between closely related bacterial genomes. Mobile Genetic Elements. 1: 230-235. PMID 22312592 DOI: 10.4161/Mge.1.3.18065 |
0.426 |
|
2011 |
Tellier A, Pfaffelhuber P, Haubold B, Naduvilezhath L, Rose LE, Städler T, Stephan W, Metzler D. Estimating parameters of speciation models based on refined summaries of the joint site-frequency spectrum. Plos One. 6: e18155. PMID 21637331 DOI: 10.1371/Journal.Pone.0018155 |
0.383 |
|
2011 |
Domazet-Lošo M, Haubold B. Alignment-free detection of local similarity among viral and bacterial genomes. Bioinformatics (Oxford, England). 27: 1466-72. PMID 21471011 DOI: 10.1093/Bioinformatics/Btr176 |
0.452 |
|
2011 |
Haubold B, Reed FA, Pfaffelhuber P. Alignment-free estimation of nucleotide diversity. Bioinformatics (Oxford, England). 27: 449-55. PMID 21156730 DOI: 10.1093/Bioinformatics/Btq689 |
0.733 |
|
2010 |
Haubold B, Pfaffelhuber P, Lynch M. mlRho - a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes. Molecular Ecology. 19: 277-84. PMID 20331786 DOI: 10.1111/J.1365-294X.2009.04482.X |
0.449 |
|
2010 |
Wolf JB, Bayer T, Haubold B, Schilhabel M, Rosenstiel P, Tautz D. Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow. Molecular Ecology. 19: 162-75. PMID 20331778 DOI: 10.1111/J.1365-294X.2009.04471.X |
0.447 |
|
2009 |
Domazet-Loso M, Haubold B. Efficient estimation of pairwise distances between genomes. Bioinformatics (Oxford, England). 25: 3221-7. PMID 19825795 DOI: 10.1093/Bioinformatics/Btp590 |
0.504 |
|
2009 |
Haubold B, Pfaffelhuber P, Domazet-Loso M, Wiehe T. Estimating mutation distances from unaligned genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1487-500. PMID 19803738 DOI: 10.1089/Cmb.2009.0106 |
0.687 |
|
2008 |
Haubold B, Domazet-Lošo M, Wiehe T. An alignment-free distance measure for closely related genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 87-99. DOI: 10.1007/978-3-540-87989-3_7 |
0.688 |
|
2006 |
Haubold B, Wiehe T. How repetitive are genomes? Bmc Bioinformatics. 7: 541. PMID 17187668 DOI: 10.1186/1471-2105-7-541 |
0.714 |
|
2006 |
Pfaffelhuber P, Haubold B, Wakolbinger A. Approximate genealogies under genetic hitchhiking Genetics. 174: 1995-2008. PMID 17182733 DOI: 10.1534/Genetics.106.061887 |
0.32 |
|
2006 |
Haubold B, Wiehe T. Introduction to computational biology: An evolutionary approach Introduction to Computational Biology: An Evolutionary Approach. 1-328. DOI: 10.1007/3-7643-7387-3 |
0.699 |
|
2005 |
Haubold B, Pierstorff N, Möller F, Wiehe T. Genome comparison without alignment using shortest unique substrings. Bmc Bioinformatics. 6: 123. PMID 15910684 DOI: 10.1186/1471-2105-6-123 |
0.732 |
|
2004 |
Haubold B, Wiehe T. Comparative genomics: methods and applications. Die Naturwissenschaften. 91: 405-21. PMID 15278216 DOI: 10.1007/S00114-004-0542-8 |
0.743 |
|
2004 |
Haubold B. Rex A. Dwyer: Genomic Perl: From Bioinformatics Basics to Working Code Naturwissenschaften. 91: 48-49. DOI: 10.1007/S00114-003-0488-2 |
0.371 |
|
2003 |
Otte K, Kranz H, Kober I, Thompson P, Hoefer M, Haubold B, Remmel B, Voss H, Kaiser C, Albers M, Cheruvallath Z, Jackson D, Casari G, Koegl M, Pääbo S, et al. Identification of farnesoid X receptor beta as a novel mammalian nuclear receptor sensing lanosterol. Molecular and Cellular Biology. 23: 864-72. PMID 12529392 DOI: 10.1128/Mcb.23.3.864-872.2003 |
0.365 |
|
2002 |
Haubold B, Kroymann J, Ratzka A, Mitchell-Olds T, Wiehe T. Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana. Genetics. 161: 1269-78. PMID 12136029 |
0.742 |
|
2002 |
Haubold B, Wiehe T. Calculating the SNP-effective sample size from an alignment. Bioinformatics (Oxford, England). 18: 36-8. PMID 11836209 DOI: 10.1093/Bioinformatics/18.1.36 |
0.681 |
|
2001 |
Koch MA, Weisshaar B, Kroymann J, Haubold B, Mitchell-Olds T. Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters. Molecular Biology and Evolution. 18: 1882-91. PMID 11557794 DOI: 10.1093/Oxfordjournals.Molbev.A003729 |
0.766 |
|
2001 |
Haubold B, Wiehe T. Statistics of divergence times Molecular Biology and Evolution. 18: 1157-1160. PMID 11420356 DOI: 10.1093/Oxfordjournals.Molbev.A003902 |
0.639 |
|
2001 |
Koch M, Haubold B, Mitchell-Olds T. Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences. American Journal of Botany. 88: 534-44. PMID 11250830 |
0.682 |
|
2001 |
Koch M, Haubold B, Mitchell-Olds T. Molecular systematics of the brassicaceae: Evidence from coding plastidic matK and nuclear Chs sequences American Journal of Botany. 88: 534-544. DOI: 10.2307/2657117 |
0.699 |
|
2000 |
Sharbel TF, Haubold B, Mitchell-Olds T. Genetic isolation by distance in Arabidopsis thaliana: Biogeography and postglacial colonization of Europe Molecular Ecology. 9: 2109-2118. PMID 11123622 DOI: 10.1046/J.1365-294X.2000.01122.X |
0.714 |
|
2000 |
Koch MA, Haubold B, Mitchell-Olds T. Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae) Molecular Biology and Evolution. 17: 1483-1498. PMID 11018155 DOI: 10.1093/Oxfordjournals.Molbev.A026248 |
0.67 |
|
2000 |
Anderson TJ, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, Mollinedo R, Bockarie M, Mokili J, Mharakurwa S, French N, Whitworth J, Velez ID, Brockman AH, Nosten F, Ferreira MU, et al. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Molecular Biology and Evolution. 17: 1467-82. PMID 11018154 DOI: 10.1093/Oxfordjournals.Molbev.A026247 |
0.323 |
|
1998 |
Preston GM, Haubold B, Rainey PB. Bacterial genomics and adaptation to life on plants: implications for the evolution of pathogenicity and symbiosis. Current Opinion in Microbiology. 1: 589-97. PMID 10066526 DOI: 10.1016/S1369-5274(98)80094-5 |
0.456 |
|
1997 |
Haubold B, Rainey PB. Towards an Understanding of the Population Genetics of Plant-Colonizing Bacteria Advances in Botanical Research. 24: 335-351. DOI: 10.1016/S0065-2296(08)60078-6 |
0.347 |
|
1996 |
Haubold B, Rainey PB. Genetic and ecotypic structure of a fluorescent Pseudomonas population Molecular Ecology. 5: 747-761. DOI: 10.1111/J.1365-294X.1996.Tb00371.X |
0.33 |
|
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