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Leanne Haggerty - Publications

Affiliations: 
Biology National University of Ireland Maynooth, Maynooth, County Kildare, Ireland 
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Warren WC, Rice ES, Maggs X, Roback E, Keene A, Martin F, Ogeh D, Haggerty L, Carroll RA, McGaugh S, Rohner N. Astyanax mexicanus surface and cavefish chromosome-scale assemblies for trait variation discovery. Biorxiv : the Preprint Server For Biology. PMID 38014157 DOI: 10.1101/2023.11.16.567450  0.792
2023 Harrison PW, Amode MR, Austine-Orimoloye O, Azov AG, Barba M, Barnes I, Becker A, Bennett R, Berry A, Bhai J, Bhurji SK, Boddu S, Branco Lins PR, Brooks L, Ramaraju SB, ... ... Haggerty L, et al. Ensembl 2024. Nucleic Acids Research. PMID 37953337 DOI: 10.1093/nar/gkad1049  0.816
2023 Rhie A, Nurk S, Cechova M, Hoyt SJ, Taylor DJ, Altemose N, Hook PW, Koren S, Rautiainen M, Alexandrov IA, Allen J, Asri M, Bzikadze AV, Chen NC, Chin CS, ... ... Haggerty L, et al. The complete sequence of a human Y chromosome. Nature. PMID 37612512 DOI: 10.1038/s41586-023-06457-y  0.735
2023 Campbell LI, Nwezeobi J, van Brunschot SL, Kaweesi T, Seal SE, Swamy RAR, Namuddu A, Maslen GL, Mugerwa H, Armean IM, Haggerty L, Martin FJ, Malka O, Santos-Garcia D, Juravel K, et al. Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors. Bmc Genomics. 24: 408. PMID 37468834 DOI: 10.1186/s12864-023-09474-3  0.721
2023 Bista I, Wood JMD, Desvignes T, McCarthy SA, Matschiner M, Ning Z, Tracey A, Torrance J, Sims Y, Chow W, Smith M, Oliver K, Haggerty L, Salzburger W, Postlethwait JH, et al. Genomics of cold adaptations in the Antarctic notothenioid fish radiation. Nature Communications. 14: 3412. PMID 37296119 DOI: 10.1038/s41467-023-38567-6  0.507
2023 Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, ... ... Haggerty L, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x  0.728
2022 Martin FJ, Amode MR, Aneja A, Austine-Orimoloye O, Azov AG, Barnes I, Becker A, Bennett R, Berry A, Bhai J, Bhurji SK, Bignell A, Boddu S, Branco Lins PR, Brooks L, ... ... Haggerty L, et al. Ensembl 2023. Nucleic Acids Research. PMID 36318249 DOI: 10.1093/nar/gkac958  0.804
2021 Dussex N, van der Valk T, Morales HE, Wheat CW, Díez-Del-Molino D, von Seth J, Foster Y, Kutschera VE, Guschanski K, Rhie A, Phillippy AM, Korlach J, Howe K, Chow W, Pelan S, ... ... Haggerty L, et al. Population genomics of the critically endangered kākāpō. Cell Genomics. 1: 100002. PMID 36777713 DOI: 10.1016/j.xgen.2021.100002  0.756
2021 Cunningham F, Allen JE, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Austine-Orimoloye O, Azov AG, Barnes I, Bennett R, Berry A, Bhai J, Bignell A, Billis K, Boddu S, ... ... Haggerty L, et al. Ensembl 2022. Nucleic Acids Research. PMID 34791404 DOI: 10.1093/nar/gkab1049  0.817
2021 Hansen T, Fjelldal PG, Lien S, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Doulcan J, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Chow W, Howe K, ... ... Haggerty L, et al. The genome sequence of the brown trout, Linnaeus 1758. Wellcome Open Research. 6: 108. PMID 34632087 DOI: 10.12688/wellcomeopenres.16838.1  0.571
2021 Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Haggerty L, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0  0.815
2020 Howe KL, Achuthan P, Allen J, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Azov AG, Bennett R, Bhai J, Billis K, Boddu S, Charkhchi M, Cummins C, Da Rin Fioretto L, ... ... Haggerty L, et al. Ensembl 2021. Nucleic Acids Research. PMID 33137190 DOI: 10.1093/nar/gkaa942  0.828
2019 Yates AD, Achuthan P, Akanni W, Allen J, Allen J, Alvarez-Jarreta J, Amode MR, Armean IM, Azov AG, Bennett R, Bhai J, Billis K, Boddu S, Marugán JC, Cummins C, ... ... Haggerty L, et al. Ensembl 2020. Nucleic Acids Research. PMID 31691826 DOI: 10.1093/nar/gkz966  0.822
2019 Pettersson ME, Rochus CM, Han F, Chen J, Hill J, Wallerman O, Fan G, Hong X, Xu Q, Zhang H, Liu S, Liu X, Haggerty L, Hunt T, Martin FJ, et al. A chromosome-level assembly of the Atlantic herring genome-detection of a supergene and other signals of selection. Genome Research. PMID 31649060 DOI: 10.1101/Gr.253435.119  0.739
2018 Cunningham F, Achuthan P, Akanni W, Allen J, Amode MR, Armean IM, Bennett R, Bhai J, Billis K, Boddu S, Cummins C, Davidson C, Dodiya KJ, Gall A, Girón CG, ... ... Haggerty L, et al. Ensembl 2019. Nucleic Acids Research. PMID 30407521 DOI: 10.1093/nar/gky1113  0.814
2018 Haggerty L, Billis K, Girón CG, Hourlier T, Izuogu O, Ogeh D, Martin FJ, Flicek P. Fish annotation in Ensembl F1000research. 7. DOI: 10.7490/F1000Research.1116174.1  0.369
2017 Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, Billis K, Cummins C, Gall A, Girón CG, Gil L, Gordon L, Haggerty L, Haskell E, Hourlier T, et al. Ensembl 2018. Nucleic Acids Research. PMID 29155950 DOI: 10.1093/nar/gkx1098  0.822
2017 Marquez-Ortiz RA, Haggerty L, Olarte N, Duarte C, Garza-Ramos U, Silva-Sanchez J, Castro BE, Sim EM, Beltran M, Moncada MV, Valderrama A, Castellanos JE, Charles IG, Vanegas N, Escobar-Perez J, et al. Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance. Genome Biology and Evolution. 9: 1725-1741. PMID 28854628 DOI: 10.1093/Gbe/Evx115  0.385
2017 Marquez-Ortiz RA, Haggerty L, Sim EM, Duarte C, Castro-Cardozo BE, Beltran M, Saavedra S, Vanegas N, Escobar-Perez J, Petty NK. First Complete Providencia rettgeri Genome Sequence, the NDM-1-Producing Clinical Strain RB151. Genome Announcements. 5. PMID 28104655 DOI: 10.1128/Genomea.01472-16  0.53
2014 Haggerty LS, Jachiet PA, Hanage WP, Fitzpatrick DA, Lopez P, O'Connell MJ, Pisani D, Wilkinson M, Bapteste E, McInerney JO. A pluralistic account of homology: adapting the models to the data. Molecular Biology and Evolution. 31: 501-16. PMID 24273322 DOI: 10.1093/Molbev/Mst228  0.739
2011 McInerney J, Cummins C, Haggerty L. Goods-thinking vs. tree-thinking: Finding a place for mobile genetic elements. Mobile Genetic Elements. 1: 304-308. PMID 22545244 DOI: 10.4161/Mge.19153  0.732
2009 Haggerty LS, Martin FJ, Fitzpatrick DA, McInerney JO. Gene and genome trees conflict at many levels. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2209-19. PMID 19571241 DOI: 10.1098/Rstb.2009.0042  0.807
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