| Year |
Citation |
Score |
| 2023 |
Muñoz-Ramírez CP, Colin N, Canales-Aguirre CB, Manosalva A, López-Rodríguez R, Sukumaran J, Górski K. Species tree analyses and speciation-based species delimitation support new species in the relict catfish family Diplomystidae and provide insights on recent glacial history in Patagonia. Molecular Phylogenetics and Evolution. 189: 107932. PMID 37751827 DOI: 10.1016/j.ympev.2023.107932 |
0.356 |
|
| 2021 |
Miralles A, Ducasse J, Brouillet S, Flouri T, Fujisawa T, Kapli P, Knowles LL, Kumari S, Stamatakis A, Sukumaran J, Lutteropp S, Vences M, Puillandre N. SPART: A versatile and standardized data exchange format for species partition information. Molecular Ecology Resources. PMID 34288531 DOI: 10.1111/1755-0998.13470 |
0.598 |
|
| 2021 |
Sukumaran J, Holder MT, Knowles LL. Incorporating the speciation process into species delimitation. Plos Computational Biology. 17: e1008924. PMID 33983918 DOI: 10.1371/journal.pcbi.1008924 |
0.74 |
|
| 2018 |
Li J, Huang JP, Sukumaran J, Knowles LL. Microevolutionary processes impact macroevolutionary patterns. Bmc Evolutionary Biology. 18: 123. PMID 30097006 DOI: 10.1186/S12862-018-1236-8 |
0.61 |
|
| 2018 |
Knowles LL, Huang H, Sukumaran J, Smith SA. A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories. American Journal of Botany. PMID 29710372 DOI: 10.1002/Ajb2.1064 |
0.762 |
|
| 2018 |
Sukumaran J, Knowles LL. Trait-Dependent Biogeography: (Re)Integrating Biology into Probabilistic Historical Biogeographical Models. Trends in Ecology & Evolution. PMID 29685579 DOI: 10.1016/J.Tree.2018.03.010 |
0.636 |
|
| 2017 |
Zeng Q, Wu S, Sukumaran J, Rodrigo A. Models of microbiome evolution incorporating host and microbial selection. Microbiome. 5: 127. PMID 28946894 DOI: 10.1186/S40168-017-0343-X |
0.317 |
|
| 2017 |
Sukumaran J, Knowles LL. Multispecies coalescent delimits structure, not species. Proceedings of the National Academy of Sciences of the United States of America. PMID 28137871 DOI: 10.1073/Pnas.1607921114 |
0.648 |
|
| 2015 |
Sukumaran J, Economo EP, Knowles LL. Machine Learning Biogeographic Processes from Biotic Patterns: A New Trait-Dependent Dispersal and Diversification Model with Model Choice By Simulation-Trained Discriminant Analysis. Systematic Biology. PMID 26715585 DOI: 10.1093/Sysbio/Syv121 |
0.634 |
|
| 2015 |
Zeng Q, Sukumaran J, Wu S, Rodrigo A. Neutral Models of Microbiome Evolution. Plos Computational Biology. 11: e1004365. PMID 26200800 DOI: 10.1371/Journal.Pcbi.1004365 |
0.349 |
|
| 2014 |
Oaks JR, Linkem CW, Sukumaran J. Implications of uniformly distributed, empirically informed priors for phylogeographical model selection: a reply to Hickerson et al. Evolution; International Journal of Organic Evolution. 68: 3607-17. PMID 25213163 DOI: 10.1111/Evo.12523 |
0.756 |
|
| 2013 |
Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, ... ... Sukumaran J, et al. Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. Bmc Bioinformatics. 14: 158. PMID 23668630 DOI: 10.1186/1471-2105-14-158 |
0.707 |
|
| 2013 |
Oaks JR, Sukumaran J, Esselstyn JA, Linkem CW, Siler CD, Holder MT, Brown RM. Evidence for climate-driven diversification? A caution for interpreting ABC inferences of simultaneous historical events. Evolution; International Journal of Organic Evolution. 67: 991-1010. PMID 23550751 DOI: 10.1111/J.1558-5646.2012.01840.X |
0.686 |
|
| 2012 |
Vos RA, Balhoff JP, Caravas JA, Holder MT, Lapp H, Maddison WP, Midford PE, Priyam A, Sukumaran J, Xia X, Stoltzfus A. NeXML: rich, extensible, and verifiable representation of comparative data and metadata. Systematic Biology. 61: 675-89. PMID 22357728 DOI: 10.1093/Sysbio/Sys025 |
0.758 |
|
| 2011 |
Sukumaran J, Holder MT. Ginkgo: spatially-explicit simulator of complex phylogeographic histories. Molecular Ecology Resources. 11: 364-9. PMID 21429145 DOI: 10.1111/J.1755-0998.2010.02926.X |
0.698 |
|
| 2011 |
Jiménez-Valverde A, Barve N, Lira-Noriega A, Maher SP, Nakazawa Y, Pape? M, Soberón J, Sukumaran J, Peterson AT. Dominant climate influences on North American bird distributions Global Ecology and Biogeography. 20: 114-118. DOI: 10.1111/J.1466-8238.2010.00574.X |
0.456 |
|
| 2010 |
Brown RM, Linkem CW, Siler CD, Sukumaran J, Esselstyn JA, Diesmos AC, Iskandar DT, Bickford D, Evans BJ, McGuire JA, Grismer L, Supriatna J, Andayani N. Phylogeography and historical demography of Polypedates leucomystax in the islands of Indonesia and the Philippines: evidence for recent human-mediated range expansion? Molecular Phylogenetics and Evolution. 57: 598-619. PMID 20601009 DOI: 10.1016/J.Ympev.2010.06.015 |
0.746 |
|
| 2010 |
Sukumaran J, Holder MT. DendroPy: a Python library for phylogenetic computing. Bioinformatics (Oxford, England). 26: 1569-71. PMID 20421198 DOI: 10.1093/Bioinformatics/Btq228 |
0.7 |
|
| 2010 |
Matsui M, Tominaga A, Liu W, Khonsue W, Grismer LL, Diesmos AC, Das I, Sudin A, Yambun P, Yong H, Sukumaran J, Brown RM. Phylogenetic relationships of Ansonia from Southeast Asia inferred from mitochondrial DNA sequences: systematic and biogeographic implications (Anura: Bufonidae). Molecular Phylogenetics and Evolution. 54: 561-70. PMID 19679193 DOI: 10.1016/J.Ympev.2009.08.003 |
0.621 |
|
| 2009 |
Wiens JJ, Sukumaran J, Pyron RA, Brown RM. Evolutionary and biogeographic origins of high tropical diversity in old world frogs (Ranidae). Evolution; International Journal of Organic Evolution. 63: 1217-31. PMID 19154386 DOI: 10.1111/J.1558-5646.2009.00610.X |
0.598 |
|
| 2009 |
Sukumaran J, Linkem CW. Choice of topology estimators in Bayesian phylogenetic analysis. Molecular Biology and Evolution. 26: 1-3. PMID 18984901 DOI: 10.1093/Molbev/Msn250 |
0.73 |
|
| 2008 |
Holder MT, Sukumaran J, Lewis PO. A justification for reporting the majority-rule consensus tree in Bayesian phylogenetics. Systematic Biology. 57: 814-21. PMID 18853367 DOI: 10.1080/10635150802422308 |
0.719 |
|
| 2006 |
Brown RM, Richards SJ, Sukumaran J, Foufopoulos J. A new morphologically cryptic species of forest frog (genus Platymantis) from New Britain Island, Bismarck Archipelago Zootaxa. 45-68. DOI: 10.11646/Zootaxa.1334.1.3 |
0.564 |
|
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