Shawn Burgess - Publications

Affiliations: 
NHGRI National Institutes of Health, Bethesda, MD 

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Chen Z, Omori Y, Koren S, Shirokiya T, Kuroda T, Miyamoto A, Wada H, Fujiyama A, Toyoda A, Zhang S, Wolfsberg TG, Kawakami K, Phillippy AM, Mullikin JC, ... Burgess SM, et al. De novo assembly of the goldfish () genome and the evolution of genes after whole-genome duplication. Science Advances. 5: eaav0547. PMID 31249862 DOI: 10.1126/sciadv.aav0547  0.32
2019 Acevedo-Canabal A, Colón-Cruz L, Rodriguez-Morales R, Varshney GK, Burgess S, González-Sepúlveda L, Yudowski G, Behra M. Altered Swimming Behaviors in Zebrafish Larvae Lacking Cannabinoid Receptor 2. Cannabis and Cannabinoid Research. 4: 88-101. PMID 31236475 DOI: 10.1089/can.2018.0025  0.32
2016 Pei W, Huang SC, Xu L, Pettie K, Ceci ML, Sánchez M, Allende ML, Burgess SM. Loss of Mgat5a-mediated N-glycosylation stimulates regeneration in zebrafish. Cell Regeneration (London, England). 5: 3. PMID 27795824 DOI: 10.1186/s13619-016-0031-5  0.32
2016 Chandler RJ, LaFave MC, Varshney GK, Burgess SM, Venditti CP. Genotoxicity in Mice Following AAV Gene Delivery: A Safety Concern for Human Gene Therapy? Molecular Therapy : the Journal of the American Society of Gene Therapy. 24: 198-201. PMID 26906613 DOI: 10.1038/mt.2016.17  0.96
2016 Vrljicak P, Tao S, Varshney GK, Quach HN, Joshi A, LaFave MC, Burgess SM, Sampath K. Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility. G3 (Bethesda, Md.). PMID 26818075 DOI: 10.1534/g3.115.026849  0.96
2016 Varshney GK, Pei W, Burgess SM. Using zebrafish to study human deafness and hearing regeneration Monographs in Human Genetics. 20: 110-131. DOI: 10.1159/000444569  0.96
2015 Varshney GK, Sood R, Burgess SM. Understanding and Editing the Zebrafish Genome. Advances in Genetics. 92: 1-52. PMID 26639914 DOI: 10.1016/bs.adgen.2015.09.002  0.96
2015 Marquart GD, Tabor KM, Brown M, Strykowski JL, Varshney GK, LaFave MC, Mueller T, Burgess SM, Higashijima S, Burgess HA. A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in Neural Circuits. 9: 78. PMID 26635538 DOI: 10.3389/fncir.2015.00078  0.96
2015 Carrington B, Varshney GK, Burgess SM, Sood R. CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity. Nucleic Acids Research. PMID 26253739 DOI: 10.1093/nar/gkv802  0.96
2015 Seiler C, Gebhart N, Zhang Y, Shinton SA, Li YS, Ross NL, Liu X, Li Q, Bilbee AN, Varshney GK, LaFave MC, Burgess SM, Balciuniene J, Balciunas D, Hardy RR, et al. Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish. Plos One. 10: e0131908. PMID 26161877 DOI: 10.1371/journal.pone.0131908  0.96
2015 LaFave MC, Varshney GK, Burgess SM. GeIST: a pipeline for mapping integrated DNA elements. Bioinformatics (Oxford, England). 31: 3219-21. PMID 26049161 DOI: 10.1093/bioinformatics/btv350  0.96
2015 Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, ... ... Burgess SM, et al. High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome Research. 25: 1030-42. PMID 26048245 DOI: 10.1101/gr.186379.114  0.96
2015 Yin L, Maddison LA, Li M, Kara N, LaFave MC, Varshney GK, Burgess SM, Patton JG, Chen W. Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs. Genetics. 200: 431-41. PMID 25855067 DOI: 10.1534/genetics.115.176917  0.96
2015 Quach HN, Tao S, Vrljicak P, Joshi A, Ruan H, Sukumaran R, Varshney GK, LaFave MC, Burgess SM, Winkler C, Emelyanov A, Parinov S, Sampath K. A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. G3 (Bethesda, Md.). 5: 1283-99. PMID 25840430 DOI: 10.1534/g3.114.015842  0.96
2015 Gallardo VE, Varshney GK, Lee M, Bupp S, Xu L, Shinn P, Crawford NP, Inglese J, Burgess SM. Phenotype-driven chemical screening in zebrafish for compounds that inhibit collective cell migration identifies multiple pathways potentially involved in metastatic invasion. Disease Models & Mechanisms. 8: 565-76. PMID 25810455 DOI: 10.1242/dmm.018689  0.96
2015 Walia JS, Altaleb N, Bello A, Kruck C, LaFave MC, Varshney GK, Burgess SM, Chowdhury B, Hurlbut D, Hemming R, Kobinger GP, Triggs-Raine B. Long-term correction of sandhoff disease following intravenous delivery of rAAV9 to mouse neonates. Molecular Therapy : the Journal of the American Society of Gene Therapy. 23: 414-22. PMID 25515709 DOI: 10.1038/mt.2014.240  0.96
2014 Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM. trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags. Bmc Bioinformatics. 15: 329. PMID 25311246 DOI: 10.1186/1471-2105-15-329  0.96
2014 LaFave MC, Varshney GK, Vemulapalli M, Mullikin JC, Burgess SM. A defined zebrafish line for high-throughput genetics and genomics: NHGRI-1. Genetics. 198: 167-70. PMID 25009150 DOI: 10.1534/genetics.114.166769  0.96
2014 LaFave MC, Varshney GK, Gildea DE, Wolfsberg TG, Baxevanis AD, Burgess SM. MLV integration site selection is driven by strong enhancers and active promoters. Nucleic Acids Research. 42: 4257-69. PMID 24464997 DOI: 10.1093/nar/gkt1399  0.96
2014 Xu H, Ye D, Behra M, Burgess S, Chen S, Lin F. Gβ1 controls collective cell migration by regulating the protrusive activity of leader cells in the posterior lateral line primordium. Developmental Biology. 385: 316-27. PMID 24201188 DOI: 10.1016/j.ydbio.2013.10.027  0.32
2014 Varshney GK, Burgess SM. Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. Briefings in Functional Genomics. 13: 82-94. PMID 24162064 DOI: 10.1093/bfgp/elt042  0.96
2013 Rothschild SC, Lahvic J, Francescatto L, McLeod JJ, Burgess SM, Tombes RM. CaMK-II activation is essential for zebrafish inner ear development and acts through Delta-Notch signaling. Developmental Biology. 381: 179-88. PMID 23747599 DOI: 10.1016/j.ydbio.2013.05.028  0.96
2013 Chen L, Stuart L, Ohsumi TK, Burgess S, Varshney GK, Dastur A, Borowsky M, Benes C, Lacy-Hulbert A, Schmidt EV. Transposon activation mutagenesis as a screening tool for identifying resistance to cancer therapeutics. Bmc Cancer. 13: 93. PMID 23442791 DOI: 10.1186/1471-2407-13-93  0.96
2013 Varshney GK, Lu J, Gildea DE, Huang H, Pei W, Yang Z, Huang SC, Schoenfeld D, Pho NH, Casero D, Hirase T, Mosbrook-Davis D, Zhang S, Jao LE, Zhang B, ... ... Burgess SM, et al. A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome Research. 23: 727-35. PMID 23382537 DOI: 10.1101/gr.151464.112  0.96
2013 Varshney GK, Huang H, Zhang S, Lu J, Gildea DE, Yang Z, Wolfsberg TG, Lin S, Burgess SM. The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion. Nucleic Acids Research. 41: D861-4. PMID 23180778 DOI: 10.1093/nar/gks946  0.96
2013 Burgess S. Zebrafish's ever-improving image Methods. 62: 183-184. DOI: 10.1016/j.ymeth.2013.08.024  0.96
2012 Burgess SM. The changing conditions of zebrafish mutants. Proceedings of the National Academy of Sciences of the United States of America. 109: 15082-3. PMID 22949684 DOI: 10.1073/pnas.1212832109  0.96
2012 Liang J, Wang D, Renaud G, Wolfsberg TG, Wilson AF, Burgess SM. The stat3/socs3a pathway is a key regulator of hair cell regeneration in zebrafish. [corrected]. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 10662-73. PMID 22855815 DOI: 10.1523/JNEUROSCI.5785-10.2012  0.96
2012 Lee MS, Bonner JR, Bernard DJ, Sanchez EL, Sause ET, Prentice RR, Burgess SM, Brody LC. Disruption of the folate pathway in zebrafish causes developmental defects. Bmc Developmental Biology. 12: 12. PMID 22480165 DOI: 10.1186/1471-213X-12-12  0.96
2012 Behra M, Gallardo VE, Bradsher J, Torrado A, Elkahloun A, Idol J, Sheehy J, Zonies S, Xu L, Shaw KM, Satou C, Higashijima S, Weinstein BM, Burgess SM. Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line. Bmc Developmental Biology. 12: 6. PMID 22273551 DOI: 10.1186/1471-213X-12-6  0.96
2012 Milla LA, Cortés CR, Hodar C, Oñate MG, Cambiazo V, Burgess SM, Palma V. Yeast-based assay identifies novel Shh/Gli target genes in vertebrate development. Bmc Genomics. 13: 2. PMID 22214306 DOI: 10.1186/1471-2164-13-2  0.96
2012 Yan J, Burgess SM. Using a yeast inverse one-hybrid system to identify functional binding sites of transcription factors. Methods in Molecular Biology (Clifton, N.J.). 786: 275-90. PMID 21938633 DOI: 10.1007/978-1-61779-292-2_17  0.96
2011 Liang J, Renaud G, Burgess SM. Sequencing-based expression profiling in zebrafish. Methods in Cell Biology. 104: 379-99. PMID 21924174 DOI: 10.1016/B978-0-12-374814-0.00021-5  0.96
2011 Amsterdam A, Varshney GK, Burgess SM. Retroviral-mediated Insertional Mutagenesis in Zebrafish. Methods in Cell Biology. 104: 59-82. PMID 21924157 DOI: 10.1016/B978-0-12-374814-0.00004-5  0.96
2010 Gallardo VE, Liang J, Behra M, Elkahloun A, Villablanca EJ, Russo V, Allende ML, Burgess SM. Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish. Bmc Developmental Biology. 10: 120. PMID 21144052 DOI: 10.1186/1471-213X-10-120  0.96
2009 Liang J, Burgess SM. Gross and fine dissection of inner ear sensory epithelia in adult zebrafish (Danio rerio). Journal of Visualized Experiments : Jove. PMID 19488023 DOI: 10.3791/1211  0.96
2009 Behra M, Bradsher J, Sougrat R, Gallardo V, Allende ML, Burgess SM. Phoenix is required for mechanosensory hair cell regeneration in the zebrafish lateral line. Plos Genetics. 5: e1000455. PMID 19381250 DOI: 10.1371/journal.pgen.1000455  0.96
2009 Jao LE, Burgess SM. Production of pseudotyped retrovirus and the generation of proviral transgenic zebrafish. Methods in Molecular Biology (Clifton, N.J.). 546: 13-30. PMID 19378095 DOI: 10.1007/978-1-60327-977-2_2  0.96
2009 Gomez GA, Veldman MB, Zhao Y, Burgess S, Lin S. Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish. Plos One. 4: e4994. PMID 19308258 DOI: 10.1371/journal.pone.0004994  0.96
2008 Jao LE, Maddison L, Chen W, Burgess SM. Using retroviruses as a mutagenesis tool to explore the zebrafish genome. Briefings in Functional Genomics & Proteomics. 7: 427-43. PMID 18977782 DOI: 10.1093/bfgp/eln038  0.96
2008 Zeng J, Yan J, Wang T, Mosbrook-Davis D, Dolan KT, Christensen R, Stormo GD, Haussler D, Lathrop RH, Brachmann RK, Burgess SM. Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Research. 36: e8. PMID 18086703 DOI: 10.1093/nar/gkm1117  0.96
2008 Bergeron SA, Milla LA, Villegas R, Shen MC, Burgess SM, Allende ML, Karlstrom RO, Palma V. Expression profiling identifies novel Hh/Gli-regulated genes in developing zebrafish embryos. Genomics. 91: 165-77. PMID 18055165 DOI: 10.1016/j.ygeno.2007.09.001  0.96
2007 Wang T, Zeng J, Lowe CB, Sellers RG, Salama SR, Yang M, Burgess SM, Brachmann RK, Haussler D. Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proceedings of the National Academy of Sciences of the United States of America. 104: 18613-8. PMID 18003932 DOI: 10.1073/pnas.0703637104  0.96
2007 Wang D, Jao LE, Zheng N, Dolan K, Ivey J, Zonies S, Wu X, Wu K, Yang H, Meng Q, Zhu Z, Zhang B, Lin S, Burgess SM. Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104: 12428-33. PMID 17640903 DOI: 10.1073/pnas.0705502104  0.96
2006 Antonellis A, Lee-Lin SQ, Wasterlain A, Leo P, Quezado M, Goldfarb LG, Myung K, Burgess S, Fischbeck KH, Green ED. Functional analyses of glycyl-tRNA synthetase mutations suggest a key role for tRNA-charging enzymes in peripheral axons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 10397-406. PMID 17035524 DOI: 10.1523/JNEUROSCI.1671-06.2006  0.96
2006 Ahmed ZM, Goodyear R, Riazuddin S, Lagziel A, Legan PK, Behra M, Burgess SM, Lilley KS, Wilcox ER, Riazuddin S, Griffith AJ, Frolenkov GI, Belyantseva IA, Richardson GP, Friedman TB. The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 7022-34. PMID 16807332 DOI: 10.1523/JNEUROSCI.1163-06.2006  0.96
2006 Yan J, Xu L, Crawford G, Wang Z, Burgess SM. The forkhead transcription factor FoxI1 remains bound to condensed mitotic chromosomes and stably remodels chromatin structure. Molecular and Cellular Biology. 26: 155-68. PMID 16354687 DOI: 10.1128/MCB.26.1.155-168.2006  0.96
2006 Wu X, Luke BT, Burgess SM. Redefining the common insertion site. Virology. 344: 292-5. PMID 16271739 DOI: 10.1016/j.virol.2005.08.047  0.96
2006 Burgess S. New techniques for using zebrafish as a model for development Methods. 39: 181-182. DOI: 10.1016/j.ymeth.2006.05.011  0.96
2005 Hardison AL, Lichten L, Banerjee-Basu S, Becker TS, Burgess SM. The zebrafish gene claudinj is essential for normal ear function and important for the formation of the otoliths. Mechanisms of Development. 122: 949-58. PMID 15925497 DOI: 10.1016/j.mod.2005.03.009  0.96
2005 Wu X, Li Y, Crise B, Burgess SM, Munroe DJ. Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses. Journal of Virology. 79: 5211-4. PMID 15795304 DOI: 10.1128/JVI.79.8.5211-5214.2005  0.96
2005 Yant SR, Wu X, Huang Y, Garrison B, Burgess SM, Kay MA. High-resolution genome-wide mapping of transposon integration in mammals. Molecular and Cellular Biology. 25: 2085-94. PMID 15743807 DOI: 10.1128/MCB.25.6.2085-2094.2005  0.96
2005 Nakai H, Wu X, Fuess S, Storm TA, Munroe D, Montini E, Burgess SM, Grompe M, Kay MA. Large-scale molecular characterization of adeno-associated virus vector integration in mouse liver. Journal of Virology. 79: 3606-14. PMID 15731255 DOI: 10.1128/JVI.79.6.3606-3614.2005  0.96
2004 Ng D, Thakker N, Corcoran CM, Donnai D, Perveen R, Schneider A, Hadley DW, Tifft C, Zhang L, Wilkie AO, van der Smagt JJ, Gorlin RJ, Burgess SM, Bardwell VJ, Black GC, et al. Oculofaciocardiodental and Lenz microphthalmia syndromes result from distinct classes of mutations in BCOR. Nature Genetics. 36: 411-6. PMID 15004558 DOI: 10.1038/ng1321  0.96
2004 Youngman MJ, Hobbs AE, Burgess SM, Srinivasan M, Jensen RE. Mmm2p, a mitochondrial outer membrane protein required for yeast mitochondrial shape and maintenance of mtDNA nucleoids. The Journal of Cell Biology. 164: 677-88. PMID 14981098 DOI: 10.1083/jcb.200308012  0.84
2004 Kurita K, Burgess SM, Sakai N. Transgenic zebrafish produced by retroviral infection of in vitro-cultured sperm Proceedings of the National Academy of Sciences of the United States of America. 101: 1263-1267. PMID 14745028 DOI: 10.1073/pnas.0304265101  0.96
2003 Wu X, Li Y, Crise B, Burgess SM. Transcription start regions in the human genome are favored targets for MLV integration Science. 300: 1749-1751. PMID 12805549 DOI: 10.1126/science.1083413  0.96
2003 Nissen RM, Yan J, Amsterdam A, Hopkins N, Burgess SM. Zebrafish foxi one modulates cellular responses to Fgf signaling required for the integrity of ear and jaw patterning Development. 130: 2543-2554. PMID 12702667 DOI: 10.1242/dev.00455  0.96
1994 Burgess SM, Delannoy M, Jensen RE. MMM1 encodes a mitochondrial outer membrane protein essential for establishing and maintaining the structure of yeast mitochondria Journal of Cell Biology. 126: 1375-1391. PMID 8089172  0.96
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