| Year |
Citation |
Score |
| 2020 |
Burgess S. Decision letter: Yap-lin28a axis targets let7-Wnt pathway to restore progenitors for initiating regeneration Elife. DOI: 10.7554/Elife.55771.Sa1 |
0.306 |
|
| 2017 |
Crawford NG, Kelly DE, Hansen MEB, Beltrame MH, Fan S, Bowman SL, Jewett E, Ranciaro A, Thompson S, Lo Y, Pfeifer SP, Jensen JD, Campbell MC, Beggs W, Hormozdiari F, ... ... Burgess S, et al. Loci associated with skin pigmentation identified in African populations. Science (New York, N.Y.). PMID 29025994 DOI: 10.1126/Science.Aan8433 |
0.307 |
|
| 2016 |
Watkins-Chow DE, Varshney GK, Garrett LJ, Chen Z, Jimenez EA, Rivas C, Bishop KS, Sood R, Harper UL, Pavan WJ, Burgess SM. Highly-Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection. G3 (Bethesda, Md.). PMID 28040780 DOI: 10.1534/g3.116.038091 |
0.332 |
|
| 2016 |
Varshney GK, Carrington B, Pei W, Bishop K, Chen Z, Fan C, Xu L, Jones M, LaFave MC, Ledin J, Sood R, Burgess SM. A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish. Nature Protocols. 11: 2357-2375. PMID 27809318 DOI: 10.1038/Nprot.2016.141 |
0.419 |
|
| 2016 |
Burgess S. Genomics: A matched set of frog sequences. Nature. 538: 320-321. PMID 27762363 DOI: 10.1038/538320A |
0.363 |
|
| 2015 |
Varshney GK, Sood R, Burgess SM. Understanding and Editing the Zebrafish Genome. Advances in Genetics. 92: 1-52. PMID 26639914 DOI: 10.1016/bs.adgen.2015.09.002 |
0.37 |
|
| 2015 |
Varshney GK, Zhang S, Pei W, Adomako-Ankomah A, Fohtung J, Schaffer K, Carrington B, Maskeri A, Slevin C, Wolfsberg T, Ledin J, Sood R, Burgess SM. CRISPRz: a database of zebrafish validated sgRNAs. Nucleic Acids Research. PMID 26438539 DOI: 10.1093/Nar/Gkv998 |
0.469 |
|
| 2015 |
Carrington B, Varshney GK, Burgess SM, Sood R. CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity. Nucleic Acids Research. PMID 26253739 DOI: 10.1093/nar/gkv802 |
0.383 |
|
| 2015 |
Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, ... ... Burgess SM, et al. High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome Research. 25: 1030-42. PMID 26048245 DOI: 10.1101/Gr.186379.114 |
0.419 |
|
| 2015 |
Quach HN, Tao S, Vrljicak P, Joshi A, Ruan H, Sukumaran R, Varshney GK, LaFave MC, Burgess SM, Winkler C, Emelyanov A, Parinov S, Sampath K. A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. G3 (Bethesda, Md.). 5: 1283-99. PMID 25840430 DOI: 10.1534/G3.114.015842 |
0.34 |
|
| 2014 |
Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM. trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags. Bmc Bioinformatics. 15: 329. PMID 25311246 DOI: 10.1186/1471-2105-15-329 |
0.528 |
|
| 2014 |
Xu H, Ye D, Behra M, Burgess S, Chen S, Lin F. Gβ1 controls collective cell migration by regulating the protrusive activity of leader cells in the posterior lateral line primordium. Developmental Biology. 385: 316-27. PMID 24201188 DOI: 10.1016/J.Ydbio.2013.10.027 |
0.333 |
|
| 2014 |
Varshney GK, Burgess SM. Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. Briefings in Functional Genomics. 13: 82-94. PMID 24162064 DOI: 10.1093/bfgp/elt042 |
0.374 |
|
| 2013 |
Chen L, Stuart L, Ohsumi TK, Burgess S, Varshney GK, Dastur A, Borowsky M, Benes C, Lacy-Hulbert A, Schmidt EV. Transposon activation mutagenesis as a screening tool for identifying resistance to cancer therapeutics. Bmc Cancer. 13: 93. PMID 23442791 DOI: 10.1186/1471-2407-13-93 |
0.328 |
|
| 2013 |
Varshney GK, Lu J, Gildea DE, Huang H, Pei W, Yang Z, Huang SC, Schoenfeld D, Pho NH, Casero D, Hirase T, Mosbrook-Davis D, Zhang S, Jao LE, Zhang B, ... ... Burgess SM, et al. A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome Research. 23: 727-35. PMID 23382537 DOI: 10.1101/Gr.151464.112 |
0.351 |
|
| 2013 |
Varshney GK, Huang H, Zhang S, Lu J, Gildea DE, Yang Z, Wolfsberg TG, Lin S, Burgess SM. The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion. Nucleic Acids Research. 41: D861-4. PMID 23180778 DOI: 10.1093/nar/gks946 |
0.333 |
|
| 2012 |
Liang J, Wang D, Renaud G, Wolfsberg TG, Wilson AF, Burgess SM. The stat3/socs3a pathway is a key regulator of hair cell regeneration in zebrafish. [corrected]. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 10662-73. PMID 22855815 DOI: 10.1523/Jneurosci.5785-10.2012 |
0.448 |
|
| 2012 |
Milla LA, Cortés CR, Hodar C, Oñate MG, Cambiazo V, Burgess SM, Palma V. Yeast-based assay identifies novel Shh/Gli target genes in vertebrate development. Bmc Genomics. 13: 2. PMID 22214306 DOI: 10.1186/1471-2164-13-2 |
0.39 |
|
| 2011 |
Liang J, Renaud G, Burgess SM. Sequencing-based expression profiling in zebrafish. Methods in Cell Biology. 104: 379-99. PMID 21924174 DOI: 10.1016/B978-0-12-374814-0.00021-5 |
0.506 |
|
| 2010 |
Gallardo VE, Liang J, Behra M, Elkahloun A, Villablanca EJ, Russo V, Allende ML, Burgess SM. Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish. Bmc Developmental Biology. 10: 120. PMID 21144052 DOI: 10.1186/1471-213X-10-120 |
0.525 |
|
| 2009 |
Liang J, Burgess SM. Gross and fine dissection of inner ear sensory epithelia in adult zebrafish (Danio rerio). Journal of Visualized Experiments : Jove. PMID 19488023 DOI: 10.3791/1211 |
0.449 |
|
| 2009 |
Gomez GA, Veldman MB, Zhao Y, Burgess S, Lin S. Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish. Plos One. 4: e4994. PMID 19308258 DOI: 10.1371/Journal.Pone.0004994 |
0.334 |
|
| 2008 |
Jao LE, Maddison L, Chen W, Burgess SM. Using retroviruses as a mutagenesis tool to explore the zebrafish genome. Briefings in Functional Genomics & Proteomics. 7: 427-43. PMID 18977782 DOI: 10.1093/bfgp/eln038 |
0.305 |
|
| 2006 |
Antonellis A, Lee-Lin SQ, Wasterlain A, Leo P, Quezado M, Goldfarb LG, Myung K, Burgess S, Fischbeck KH, Green ED. Functional analyses of glycyl-tRNA synthetase mutations suggest a key role for tRNA-charging enzymes in peripheral axons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 10397-406. PMID 17035524 DOI: 10.1523/Jneurosci.1671-06.2006 |
0.318 |
|
| 2005 |
Yant SR, Wu X, Huang Y, Garrison B, Burgess SM, Kay MA. High-resolution genome-wide mapping of transposon integration in mammals. Molecular and Cellular Biology. 25: 2085-94. PMID 15743807 DOI: 10.1128/Mcb.25.6.2085-2094.2005 |
0.328 |
|
| 2004 |
Youngman MJ, Hobbs AE, Burgess SM, Srinivasan M, Jensen RE. Mmm2p, a mitochondrial outer membrane protein required for yeast mitochondrial shape and maintenance of mtDNA nucleoids. The Journal of Cell Biology. 164: 677-88. PMID 14981098 DOI: 10.1083/Jcb.200308012 |
0.681 |
|
| 2004 |
Nakai H, Wu X, Fuess S, Storm T, Burgess S, Grompe M, Kay MA. 13. Hot Spots for rAAV2 Vector Integration in Mice Molecular Therapy. 9. DOI: 10.1016/J.Ymthe.2004.05.094 |
0.34 |
|
| 2002 |
Golling G, Amsterdam A, Sun Z, Antonelli M, Maldonado E, Chen W, Burgess S, Haldi M, Artzt K, Farrington S, Lin SY, Nissen RM, Hopkins N. Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development Nature Genetics. 31: 135-140. PMID 12006978 DOI: 10.1038/Ng896 |
0.408 |
|
| 2000 |
Burgess S, Hopkins N. Use of pseudotyped retroviruses in zebrafish as genetic tags Methods in Enzymology. 327: 145-161. PMID 11044980 DOI: 10.1016/S0076-6879(00)27273-X |
0.367 |
|
| 1999 |
Amsterdam A, Burgess S, Golling G, Chen W, Sun Z, Townsend K, Farrington S, Haldi M, Hopkins N. A large-scale insertional mutagenesis screen in zebrafish Genes and Development. 13: 2713-2724. PMID 10541557 DOI: 10.1101/Gad.13.20.2713 |
0.375 |
|
| 1997 |
Amsterdam A, Yoon C, Allende M, Becker T, Kawakami K, Burgess S, Gaiano N, Hopkins N. Retrovirus-mediated insertional mutagenesis in zebrafish and identification of a molecular marker for embryonic germ cells. Cold Spring Harbor Symposia On Quantitative Biology. 62: 437-50. PMID 9598379 DOI: 10.1101/Sqb.1997.062.01.052 |
0.328 |
|
| 1994 |
Burgess SM, Delannoy M, Jensen RE. MMM1 encodes a mitochondrial outer membrane protein essential for establishing and maintaining the structure of yeast mitochondria Journal of Cell Biology. 126: 1375-1391. PMID 8089172 DOI: 10.1083/Jcb.126.6.1375 |
0.571 |
|
| 1991 |
Zon LI, Mather C, Burgess S, Bolce ME, Harland RM, Orkin SH. Expression of GATA-binding proteins during embryonic development in Xenopus laevis. Proceedings of the National Academy of Sciences of the United States of America. 88: 10642-6. PMID 1961730 DOI: 10.1073/Pnas.88.23.10642 |
0.316 |
|
| 1990 |
Zon LI, Tsai SF, Burgess S, Matsudaira P, Bruns GAP, Orkin SH. The major human erythroid DNA-binding protein (GF-1): Primary sequence and localization of the gene to the X chromosome Proceedings of the National Academy of Sciences of the United States of America. 87: 668-672. PMID 2300555 DOI: 10.1073/Pnas.87.2.668 |
0.312 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2007 |
Wang D, Jao LE, Zheng N, Dolan K, Ivey J, Zonies S, Wu X, Wu K, Yang H, Meng Q, Zhu Z, Zhang B, Lin S, Burgess SM. Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104: 12428-33. PMID 17640903 DOI: 10.1073/Pnas.0705502104 |
0.3 |
|
| 2016 |
Varshney GK, Burgess SM. DNA-guided genome editing using structure-guided endonucleases. Genome Biology. 17: 187. PMID 27640875 DOI: 10.1186/s13059-016-1055-4 |
0.291 |
|
| 2002 |
Chen W, Burgess S, Golling G, Amsterdam A, Hopkins N. High-throughput selection of retrovirus producer cell lines leads to markedly improved efficiency of germ line-transmissible insertions in zebra fish Journal of Virology. 76: 2192-2198. PMID 11836396 DOI: 10.1128/Jvi.76.5.2192-2198.2002 |
0.29 |
|
| 2018 |
Unal Eroglu A, Mulligan TS, Zhang L, White DT, Sengupta S, Nie C, Lu NY, Qian J, Xu L, Pei W, Burgess SM, Saxena MT, Mumm JS. Multiplexed CRISPR/Cas9 Targeting of Genes Implicated in Retinal Regeneration and Degeneration. Frontiers in Cell and Developmental Biology. 6: 88. PMID 30186835 DOI: 10.3389/fcell.2018.00088 |
0.283 |
|
| 2008 |
Grinblat Y, Nyholm M, Taylor A, Burgess S. A role for zic genes during neural tube morphogenesis in zebrafish Developmental Biology. 319: 514-515. DOI: 10.1016/J.Ydbio.2008.05.172 |
0.281 |
|
| 2002 |
Burgess S, Reim G, Chen W, Hopkins N, Brand M. The zebrafish spiel-ohne-grenzen (spg) gene encodes the POU domain protein Pou2 related to mammalian Oct4 and is essential for formation of the midbrain and hindbrain, and for pre-gastrula morphogenesis Development. 129: 905-916. PMID 11861474 |
0.28 |
|
| 2005 |
Hardison AL, Lichten L, Banerjee-Basu S, Becker TS, Burgess SM. The zebrafish gene claudinj is essential for normal ear function and important for the formation of the otoliths. Mechanisms of Development. 122: 949-58. PMID 15925497 DOI: 10.1016/j.mod.2005.03.009 |
0.278 |
|
| 2023 |
Omori Y, Burgess SM. The Goldfish Genome and Its Utility for Understanding Gene Regulation and Vertebrate Body Morphology. Methods in Molecular Biology (Clifton, N.J.). 2707: 335-355. PMID 37668923 DOI: 10.1007/978-1-0716-3401-1_22 |
0.274 |
|
| 2023 |
Fodor E, Okendo J, Szabó N, Szabó K, Czimer D, Tarján-Rácz A, Szeverényi I, Low BW, Liew JH, Koren S, Rhie A, Orbán L, Miklósi Á, Varga M, Burgess SM. The reference genome of the paradise fish ( ). Biorxiv : the Preprint Server For Biology. PMID 37609174 DOI: 10.1101/2023.08.10.552018 |
0.272 |
|
| 2022 |
Weinstein R, Bishop K, Broadbridge E, Yu K, Carrington B, Elkahloun A, Zhen T, Pei W, Burgess SM, Liu P, Bresciani E, Sood R. Zrsr2 Is Essential for the Embryonic Development and Splicing of Minor Introns in RNA and Protein Processing Genes in Zebrafish. International Journal of Molecular Sciences. 23. PMID 36142581 DOI: 10.3390/ijms231810668 |
0.266 |
|
| 2019 |
Pei W, Burgess SM. Microinjection in Zebrafish for Genome Editing and Functional Studies. Methods in Molecular Biology (Clifton, N.J.). 1874: 459-474. PMID 30353530 DOI: 10.1007/978-1-4939-8831-0_26 |
0.264 |
|
| 2021 |
Shin U, Nakhro K, Oh CK, Carrington B, Song H, Varshney GK, Kim Y, Song H, Jeon S, Robbins G, Kim S, Yoon S, Choi YJ, Kim YJ, Burgess S, et al. Large-scale generation and phenotypic characterization of zebrafish CRISPR mutants of DNA repair genes. Dna Repair. 107: 103173. PMID 34390914 DOI: 10.1016/j.dnarep.2021.103173 |
0.263 |
|
| 2008 |
Zeng J, Yan J, Wang T, Mosbrook-Davis D, Dolan KT, Christensen R, Stormo GD, Haussler D, Lathrop RH, Brachmann RK, Burgess SM. Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Research. 36: e8. PMID 18086703 DOI: 10.1093/Nar/Gkm1117 |
0.261 |
|
| 2011 |
Amsterdam A, Varshney GK, Burgess SM. Retroviral-mediated Insertional Mutagenesis in Zebrafish. Methods in Cell Biology. 104: 59-82. PMID 21924157 DOI: 10.1016/B978-0-12-374814-0.00004-5 |
0.256 |
|
| 2019 |
Burgess S. Decision letter: scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling Elife. DOI: 10.7554/Elife.44431.048 |
0.255 |
|
| 2015 |
Seiler C, Gebhart N, Zhang Y, Shinton SA, Li YS, Ross NL, Liu X, Li Q, Bilbee AN, Varshney GK, LaFave MC, Burgess SM, Balciuniene J, Balciunas D, Hardy RR, et al. Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish. Plos One. 10: e0131908. PMID 26161877 DOI: 10.1371/Journal.Pone.0131908 |
0.253 |
|
| 2006 |
Burgess S. New techniques for using zebrafish as a model for development Methods. 39: 181-182. DOI: 10.1016/J.Ymeth.2006.05.011 |
0.252 |
|
| 2016 |
Varshney GK, Pei W, Burgess SM. Using zebrafish to study human deafness and hearing regeneration Monographs in Human Genetics. 20: 110-131. DOI: 10.1159/000444569 |
0.25 |
|
| 2017 |
Li H, Pei W, Vergarajauregui S, Zerfas PM, Raben N, Burgess SM, Puertollano R. Novel Degenerative and Developmental Defects in a Zebrafish Model of Mucolipidosis Type IV. Human Molecular Genetics. PMID 28449103 DOI: 10.1093/hmg/ddx158 |
0.25 |
|
| 2019 |
Chen Z, Omori Y, Koren S, Shirokiya T, Kuroda T, Miyamoto A, Wada H, Fujiyama A, Toyoda A, Zhang S, Wolfsberg TG, Kawakami K, Phillippy AM, Mullikin JC, ... Burgess SM, et al. De novo assembly of the goldfish () genome and the evolution of genes after whole-genome duplication. Science Advances. 5: eaav0547. PMID 31249862 DOI: 10.1126/Sciadv.Aav0547 |
0.248 |
|
| 2020 |
Ichino N, Serres MR, Urban RM, Urban MD, Treichel AJ, Schaefbauer KJ, Greif LE, Varshney GK, Skuster KJ, McNulty MS, Daby CL, Wang Y, Liao HK, El-Rass S, Ding Y, ... ... Burgess SM, et al. Building the vertebrate codex using the gene breaking protein trap library. Elife. 9. PMID 32779569 DOI: 10.7554/Elife.54572 |
0.248 |
|
| 2011 |
Xu H, Behra M, Burgess S, Chen S, Lin F. Gbetagamma signaling is essential for migration of the posterior lateral line primordium in zebrafish Developmental Biology. 356: 108. DOI: 10.1016/J.Ydbio.2011.05.029 |
0.246 |
|
| 2022 |
Baranasic D, Hörtenhuber M, Balwierz PJ, Zehnder T, Mukarram AK, Nepal C, Várnai C, Hadzhiev Y, Jimenez-Gonzalez A, Li N, Wragg J, D'Orazio FM, Relic D, Pachkov M, Díaz N, ... ... Burgess SM, et al. Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature Genetics. PMID 35789323 DOI: 10.1038/s41588-022-01089-w |
0.244 |
|
| 2014 |
LaFave MC, Varshney GK, Vemulapalli M, Mullikin JC, Burgess SM. A defined zebrafish line for high-throughput genetics and genomics: NHGRI-1. Genetics. 198: 167-70. PMID 25009150 DOI: 10.1534/Genetics.114.166769 |
0.24 |
|
| 2005 |
Wu X, Li Y, Crise B, Burgess SM, Munroe DJ. Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses. Journal of Virology. 79: 5211-4. PMID 15795304 DOI: 10.1128/JVI.79.8.5211-5214.2005 |
0.24 |
|
| 2012 |
Yan J, Burgess SM. Using a yeast inverse one-hybrid system to identify functional binding sites of transcription factors. Methods in Molecular Biology (Clifton, N.J.). 786: 275-90. PMID 21938633 DOI: 10.1007/978-1-61779-292-2_17 |
0.239 |
|
| 2018 |
Rissone A, Burgess SM. Rare Genetic Blood Disease Modeling in Zebrafish. Frontiers in Genetics. 9: 348. PMID 30233640 DOI: 10.3389/fgene.2018.00348 |
0.237 |
|
| 2019 |
Burgess S. Decision letter: Single-cell analysis uncovers that metabolic reprogramming by ErbB2 signaling is essential for cardiomyocyte proliferation in the regenerating heart Elife. DOI: 10.7554/Elife.50163.Sa1 |
0.236 |
|
| 2016 |
Pei W, Xu L, Varshney GK, Carrington B, Bishop K, Jones M, Huang SC, Idol J, Pretorius PR, Beirl A, Schimmenti LA, Kindt KS, Sood R, Burgess SM. Additive reductions in zebrafish PRPS1 activity result in a spectrum of deficiencies modeling several human PRPS1-associated diseases. Scientific Reports. 6: 29946. PMID 27425195 DOI: 10.1038/Srep29946 |
0.234 |
|
| 2016 |
Burgess S, Cheng L, Gu F, Huang J, Huang Z, Lin S, Li J, Li W, Qin W, Sun Y, Songyang Z, Wei W, Wu Q, Wang H, Wang X, et al. Erratum to: Questions about NgAgo. Protein & Cell. PMID 27913985 DOI: 10.1007/S13238-016-0349-3 |
0.23 |
|
| 2016 |
Vrljicak P, Tao S, Varshney GK, Quach HN, Joshi A, LaFave MC, Burgess SM, Sampath K. Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility. G3 (Bethesda, Md.). PMID 26818075 DOI: 10.1534/G3.115.026849 |
0.229 |
|
| 2016 |
Burgess S, Cheng L, Gu F, Huang J, Huang Z, Lin S, Li J, Li W, Qin W, Sun Y, Songyang Z, Wei W, Wu Q, Wang H, Wang X, et al. Questions about NgAgo. Protein & Cell. PMID 27848216 DOI: 10.1007/S13238-016-0343-9 |
0.229 |
|
| 2022 |
Jimenez E, Slevin CC, Song W, Chen Z, Frederickson SC, Gildea D, Wu W, Elkahloun AG, Ovcharenko I, Burgess SM. A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish. Cell Genomics. 2. PMID 36212030 DOI: 10.1016/j.xgen.2022.100170 |
0.227 |
|
| 2022 |
Burgess SM. Singling out how genes are regulated during development. Cell Genomics. 2: 100087. PMID 36777039 DOI: 10.1016/j.xgen.2021.100087 |
0.226 |
|
| 2022 |
Habicher J, Varshney GK, Waldmann L, Snitting D, Allalou A, Zhang H, Ghanem A, Öhman Mägi C, Dierker T, Kjellén L, Burgess SM, Ledin J. Chondroitin/dermatan sulfate glycosyltransferase genes are essential for craniofacial development. Plos Genetics. 18: e1010067. PMID 35192612 DOI: 10.1371/journal.pgen.1010067 |
0.224 |
|
| 2008 |
Bergeron SA, Milla LA, Villegas R, Shen MC, Burgess SM, Allende ML, Karlstrom RO, Palma V. Expression profiling identifies novel Hh/Gli-regulated genes in developing zebrafish embryos. Genomics. 91: 165-77. PMID 18055165 DOI: 10.1016/J.Ygeno.2007.09.001 |
0.223 |
|
| 2022 |
Stephan T, Burgess SM, Cheng H, Danko CG, Gill CA, Jarvis ED, Koepfli KP, Koltes JE, Lyons E, Ronald P, Ryder OA, Schriml LM, Soltis P, VandeWoude S, Zhou H, et al. Darwinian genomics and diversity in the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042807 DOI: 10.1073/pnas.2115644119 |
0.223 |
|
| 2019 |
McElderry J, Carrington B, Bishop K, Kim E, Pei W, Chen Z, Ramanagoudr-Bhojappa R, Prakash A, Burgess SM, Liu PP, Sood R. Splicing factor DHX15 affects tp53 and mdm2 expression via alternate splicing and promoter usage. Human Molecular Genetics. PMID 31691804 DOI: 10.1093/Hmg/Ddz261 |
0.222 |
|
| 2018 |
Pei W, Xu L, Huang SC, Pettie K, Idol J, Rissone A, Jimenez E, Sinclair JW, Slevin C, Varshney GK, Jones M, Carrington B, Bishop K, Huang H, Sood R, ... ... Burgess SM, et al. Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues. Npj Regenerative Medicine. 3: 11. PMID 29872546 DOI: 10.1038/s41536-018-0050-7 |
0.222 |
|
| 2020 |
Banote RK, Chebli J, Şatır TM, Varshney GK, Camacho R, Ledin J, Burgess SM, Abramsson A, Zetterberg H. Amyloid precursor protein-b facilitates cell adhesion during early development in zebrafish. Scientific Reports. 10: 10127. PMID 32576936 DOI: 10.1038/s41598-020-66584-8 |
0.221 |
|
| 2021 |
Czimer D, Porok K, Csete D, Gyüre Z, Lavró V, Fülöp K, Chen Z, Gyergyák H, Tusnády GE, Burgess SM, Mócsai A, Váradi A, Varga M. A New Zebrafish Model for Pseudoxanthoma Elasticum. Frontiers in Cell and Developmental Biology. 9: 628699. PMID 33768091 DOI: 10.3389/fcell.2021.628699 |
0.22 |
|
| 2015 |
Gallardo VE, Varshney GK, Lee M, Bupp S, Xu L, Shinn P, Crawford NP, Inglese J, Burgess SM. Phenotype-driven chemical screening in zebrafish for compounds that inhibit collective cell migration identifies multiple pathways potentially involved in metastatic invasion. Disease Models & Mechanisms. 8: 565-76. PMID 25810455 DOI: 10.1242/dmm.018689 |
0.219 |
|
| 2014 |
LaFave MC, Varshney GK, Gildea DE, Wolfsberg TG, Baxevanis AD, Burgess SM. MLV integration site selection is driven by strong enhancers and active promoters. Nucleic Acids Research. 42: 4257-69. PMID 24464997 DOI: 10.1093/Nar/Gkt1399 |
0.217 |
|
| 2009 |
Behra M, Bradsher J, Sougrat R, Gallardo V, Allende ML, Burgess SM. Phoenix is required for mechanosensory hair cell regeneration in the zebrafish lateral line. Plos Genetics. 5: e1000455. PMID 19381250 DOI: 10.1371/Journal.Pgen.1000455 |
0.217 |
|
| 2016 |
Pei W, Huang SC, Xu L, Pettie K, Ceci ML, Sánchez M, Allende ML, Burgess SM. Loss of Mgat5a-mediated N-glycosylation stimulates regeneration in zebrafish. Cell Regeneration (London, England). 5: 3. PMID 27795824 DOI: 10.1186/S13619-016-0031-5 |
0.212 |
|
| 2012 |
Behra M, Gallardo VE, Bradsher J, Torrado A, Elkahloun A, Idol J, Sheehy J, Zonies S, Xu L, Shaw KM, Satou C, Higashijima S, Weinstein BM, Burgess SM. Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line. Bmc Developmental Biology. 12: 6. PMID 22273551 DOI: 10.1186/1471-213X-12-6 |
0.21 |
|
| 2013 |
Burgess S. Zebrafish's ever-improving image Methods. 62: 183-184. DOI: 10.1016/J.Ymeth.2013.08.024 |
0.208 |
|
| 2003 |
Nissen RM, Yan J, Amsterdam A, Hopkins N, Burgess SM. Zebrafish foxi one modulates cellular responses to Fgf signaling required for the integrity of ear and jaw patterning Development. 130: 2543-2554. PMID 12702667 DOI: 10.1242/Dev.00455 |
0.208 |
|
| 2018 |
Tseng WC, Loeb HE, Pei W, Tsai-Morris CH, Xu L, Cluzeau CV, Wassif CA, Feldman B, Burgess SM, Pavan WJ, Porter FD. Modeling Niemann-Pick disease type C1 in zebrafish: a robust platform for screening of candidate therapeutic compounds. Disease Models & Mechanisms. 11. PMID 30135069 DOI: 10.1242/dmm.034165 |
0.207 |
|
| 2020 |
Pei W, Xu L, Chen Z, Slevin CC, Pettie KP, Wincovitch S, Burgess SM. A subset of SMN complex members have a specific role in tissue regeneration via ERBB pathway-mediated proliferation. Npj Regenerative Medicine. 5: 6. PMID 32218991 DOI: 10.1038/s41536-020-0089-0 |
0.207 |
|
| 2019 |
Burgess S. Decision letter: Metabolic modulation regulates cardiac wall morphogenesis in zebrafish Elife. DOI: 10.7554/Elife.50161.Sa1 |
0.207 |
|
| 2022 |
Kon T, Fukuta K, Chen Z, Kon-Nanjo K, Suzuki K, Ishikawa M, Tanaka H, Burgess SM, Noguchi H, Toyoda A, Omori Y. Single-cell transcriptomics of the goldfish retina reveals genetic divergence in the asymmetrically evolved subgenomes after allotetraploidization. Communications Biology. 5: 1404. PMID 36572749 DOI: 10.1038/s42003-022-04351-3 |
0.206 |
|
| 2020 |
Pei W, Xu L, Chen Z, Slevin CC, Pettie KP, Wincovitch S, Burgess SM. A subset of SMN complex members have a specific role in tissue regeneration via ERBB pathway-mediated proliferation. Npj Regenerative Medicine. 5: 6. PMID 33580019 DOI: 10.1038/s41536-020-0089-0 |
0.205 |
|
| 2021 |
Jimenez E, Slevin CC, Colón-Cruz L, Burgess SM. Vestibular and Auditory Hair Cell Regeneration Following Targeted Ablation of Hair Cells With Diphtheria Toxin in Zebrafish. Frontiers in Cellular Neuroscience. 15: 721950. PMID 34489643 DOI: 10.3389/fncel.2021.721950 |
0.202 |
|
| 2006 |
Yan J, Xu L, Crawford G, Wang Z, Burgess SM. The forkhead transcription factor FoxI1 remains bound to condensed mitotic chromosomes and stably remodels chromatin structure. Molecular and Cellular Biology. 26: 155-68. PMID 16354687 DOI: 10.1128/Mcb.26.1.155-168.2006 |
0.199 |
|
| 2015 |
LaFave MC, Varshney GK, Burgess SM. GeIST: a pipeline for mapping integrated DNA elements. Bioinformatics (Oxford, England). 31: 3219-21. PMID 26049161 DOI: 10.1093/Bioinformatics/Btv350 |
0.196 |
|
| 2013 |
Rothschild SC, Lahvic J, Francescatto L, McLeod JJ, Burgess SM, Tombes RM. CaMK-II activation is essential for zebrafish inner ear development and acts through Delta-Notch signaling. Developmental Biology. 381: 179-88. PMID 23747599 DOI: 10.1016/J.Ydbio.2013.05.028 |
0.192 |
|
| 2006 |
Wu X, Luke BT, Burgess SM. Redefining the common insertion site. Virology. 344: 292-5. PMID 16271739 DOI: 10.1016/j.virol.2005.08.047 |
0.189 |
|
| 2015 |
Yin L, Maddison LA, Li M, Kara N, LaFave MC, Varshney GK, Burgess SM, Patton JG, Chen W. Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs. Genetics. 200: 431-41. PMID 25855067 DOI: 10.1534/Genetics.115.176917 |
0.189 |
|
| 2019 |
Rissone A, Jimenez E, Bishop K, Carrington B, Slevin C, Wincovitch SM, Sood R, Candotti F, Burgess SM. A model for reticular dysgenesis shows impaired sensory organ development and hair cell regeneration linked to cellular stress. Disease Models & Mechanisms. PMID 31727854 DOI: 10.1242/dmm.040170 |
0.186 |
|
| 2018 |
Burgess S, Martínez-Morales JR. Decision letter: Compensatory growth renders Tcf7l1a dispensable for eye formation despite its requirement in eye field specification Elife. DOI: 10.7554/Elife.40093.033 |
0.186 |
|
| 2020 |
Kon T, Omori Y, Fukuta K, Wada H, Watanabe M, Chen Z, Iwasaki M, Mishina T, Matsuzaki SS, Yoshihara D, Arakawa J, Kawakami K, Toyoda A, Burgess SM, Noguchi H, et al. The Genetic Basis of Morphological Diversity in Domesticated Goldfish. Current Biology : Cb. PMID 32392470 DOI: 10.1016/J.Cub.2020.04.034 |
0.185 |
|
| 2012 |
LaFave MC, Varshney GK, Burgess SM. Investigation of retroviral integration preference via high-throughput sequencing Bmc Proceedings. 6. DOI: 10.1186/1753-6561-6-S6-P22 |
0.185 |
|
| 2016 |
Planchart A, Mattingly CJ, Allen D, Ceger P, Casey W, Hinton D, Kanungo J, Kullman SW, Tal T, Bondesson M, Burgess SM, Sullivan C, Kim C, Behl M, Padilla S, et al. Advancing toxicology research using in vivo high throughput toxicology with small fish models. Altex. PMID 27328013 DOI: 10.14573/Altex.1601281 |
0.183 |
|
| 2003 |
Wu X, Li Y, Crise B, Burgess SM. Transcription start regions in the human genome are favored targets for MLV integration Science. 300: 1749-1751. PMID 12805549 DOI: 10.1126/science.1083413 |
0.181 |
|
| 2012 |
Lee MS, Bonner JR, Bernard DJ, Sanchez EL, Sause ET, Prentice RR, Burgess SM, Brody LC. Disruption of the folate pathway in zebrafish causes developmental defects. Bmc Developmental Biology. 12: 12. PMID 22480165 DOI: 10.1186/1471-213X-12-12 |
0.179 |
|
| 2005 |
Nakai H, Wu X, Fuess S, Storm TA, Munroe D, Montini E, Burgess SM, Grompe M, Kay MA. Large-scale molecular characterization of adeno-associated virus vector integration in mouse liver. Journal of Virology. 79: 3606-14. PMID 15731255 DOI: 10.1128/Jvi.79.6.3606-3614.2005 |
0.176 |
|
| 2007 |
Wang T, Zeng J, Lowe CB, Sellers RG, Salama SR, Yang M, Burgess SM, Brachmann RK, Haussler D. Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proceedings of the National Academy of Sciences of the United States of America. 104: 18613-8. PMID 18003932 DOI: 10.1073/Pnas.0703637104 |
0.17 |
|
| 2015 |
Marquart GD, Tabor KM, Brown M, Strykowski JL, Varshney GK, LaFave MC, Mueller T, Burgess SM, Higashijima S, Burgess HA. A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in Neural Circuits. 9: 78. PMID 26635538 DOI: 10.3389/Fncir.2015.00078 |
0.165 |
|
| 2015 |
Gray LR, Sultana MR, Rauckhorst AJ, Oonthonpan L, Tompkins SC, Sharma A, Fu X, Miao R, Pewa AD, Brown KS, Lane EE, Dohlman A, Zepeda-Orozco D, Xie J, Rutter J, ... ... Burgess SC, et al. Hepatic Mitochondrial Pyruvate Carrier 1 Is Required for Efficient Regulation of Gluconeogenesis and Whole-Body Glucose Homeostasis. Cell Metabolism. PMID 26344103 DOI: 10.1016/J.Cmet.2015.07.027 |
0.165 |
|
| 2019 |
Acevedo-Canabal A, Colón-Cruz L, Rodriguez-Morales R, Varshney GK, Burgess S, González-Sepúlveda L, Yudowski G, Behra M. Altered Swimming Behaviors in Zebrafish Larvae Lacking Cannabinoid Receptor 2. Cannabis and Cannabinoid Research. 4: 88-101. PMID 31236475 DOI: 10.1089/can.2018.0025 |
0.165 |
|
| 2015 |
McCommis KS, Chen Z, Fu X, McDonald WG, Colca JR, Kletzien RF, Burgess SC, Finck BN. Loss of Mitochondrial Pyruvate Carrier 2 in the Liver Leads to Defects in Gluconeogenesis and Compensation via Pyruvate-Alanine Cycling. Cell Metabolism. 22: 682-94. PMID 26344101 DOI: 10.1016/J.Cmet.2015.07.028 |
0.163 |
|
| 2023 |
Hadzhiev Y, Wheatley L, Cooper L, Ansaloni F, Whalley C, Chen Z, Finaurini S, Gustincich S, Sanges R, Burgess S, Beggs A, Müller F. The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation. Developmental Cell. 58: 155-170.e8. PMID 36693321 DOI: 10.1016/j.devcel.2022.12.007 |
0.162 |
|
| 2004 |
Kurita K, Burgess SM, Sakai N. Transgenic zebrafish produced by retroviral infection of in vitro-cultured sperm Proceedings of the National Academy of Sciences of the United States of America. 101: 1263-1267. PMID 14745028 DOI: 10.1073/pnas.0304265101 |
0.158 |
|
| 2021 |
Hyroššová P, Aragó M, Moreno-Felici J, Fu X, Mendez-Lucas A, García-Rovés PM, Burgess S, Figueras A, Viñals F, Perales JC. PEPCK-M recoups tumor cell anabolic potential in a PKC-ζ-dependent manner. Cancer & Metabolism. 9: 1. PMID 33413684 DOI: 10.1186/s40170-020-00236-3 |
0.157 |
|
| 2006 |
Ahmed ZM, Goodyear R, Riazuddin S, Lagziel A, Legan PK, Behra M, Burgess SM, Lilley KS, Wilcox ER, Riazuddin S, Griffith AJ, Frolenkov GI, Belyantseva IA, Richardson GP, Friedman TB. The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 7022-34. PMID 16807332 DOI: 10.1523/JNEUROSCI.1163-06.2006 |
0.156 |
|
| 2023 |
Sendell-Price AT, Tulenko FJ, Pettersson M, Kang D, Montandon M, Winkler S, Kulb K, Naylor GP, Phillippy A, Fedrigo O, Mountcastle J, Balacco JR, Dutra A, Dale RE, Haase B, ... ... Burgess SM, et al. Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks. Nature Communications. 14: 6628. PMID 37857613 DOI: 10.1038/s41467-023-42238-x |
0.156 |
|
| 2008 |
Ronnebaum SM, Jensen MV, Hohmeier HE, Burgess SC, Zhou YP, Qian S, MacNeil D, Howard A, Thornberry N, Ilkayeva O, Lu D, Sherry AD, Newgard CB. Silencing of cytosolic or mitochondrial isoforms of malic enzyme has no effect on glucose-stimulated insulin secretion from rodent islets. The Journal of Biological Chemistry. 283: 28909-17. PMID 18755687 DOI: 10.1074/Jbc.M804665200 |
0.149 |
|
| 2015 |
Chandler RJ, LaFave MC, Varshney GK, Trivedi NS, Carrillo-Carrasco N, Senac JS, Wu W, Hoffmann V, Elkahloun AG, Burgess SM, Venditti CP. Vector design influences hepatic genotoxicity after adeno-associated virus gene therapy. The Journal of Clinical Investigation. 125: 870-80. PMID 25607839 DOI: 10.1172/Jci79213 |
0.144 |
|
| 2016 |
Pei W, Tanaka K, Huang SC, Xu L, Liu B, Sinclair J, Idol J, Varshney GK, Huang H, Lin S, Nussenblatt RB, Mori R, Burgess SM. Extracellular HSP60 triggers tissue regeneration and wound healing by regulating inflammation and cell proliferation. Npj Regenerative Medicine. 1. PMID 28936359 DOI: 10.1038/npjregenmed.2016.13 |
0.143 |
|
| 2023 |
Yiew NKH, Deja S, Ferguson D, Cho K, Jarasvaraparn C, Jacome-Sosa M, Lutkewitte AJ, Mukherjee S, Fu X, Singer JM, Patti GJ, Burgess SC, Finck BN. Effects of hepatic mitochondrial pyruvate carrier deficiency on lipogenesis and gluconeogenesis in mice. Iscience. 26: 108196. PMID 37942005 DOI: 10.1016/j.isci.2023.108196 |
0.143 |
|
| 2002 |
Chen W, Burgess S, Golling G, Amsterdam A, Hopkins N. High-Throughput Selection of Retrovirus Producer Cell Lines Leads to Markedly Improved Efficiency of Germ Line-Transmissible Insertions in Zebra Fish Journal of Virology. 76: 5300-5300. DOI: 10.1128/jvi.76.10.5300.2002 |
0.141 |
|
| 2014 |
Vigueira PA, McCommis KS, Schweitzer GG, Remedi MS, Chambers KT, Fu X, McDonald WG, Cole SL, Colca JR, Kletzien RF, Burgess SC, Finck BN. Mitochondrial pyruvate carrier 2 hypomorphism in mice leads to defects in glucose-stimulated insulin secretion. Cell Reports. 7: 2042-53. PMID 24910426 DOI: 10.1016/J.Celrep.2014.05.017 |
0.138 |
|
| 2021 |
Sinclair JW, Hoying DR, Bresciani E, Nogare DD, Needle CD, Berger A, Wu W, Bishop K, Elkahloun AG, Chitnis A, Liu P, Burgess SM. The Warburg effect is necessary to promote glycosylation in the blastema during zebrafish tail regeneration. Npj Regenerative Medicine. 6: 55. PMID 34518542 DOI: 10.1038/s41536-021-00163-x |
0.137 |
|
| 2004 |
Ng D, Thakker N, Corcoran CM, Donnai D, Perveen R, Schneider A, Hadley DW, Tifft C, Zhang L, Wilkie AO, van der Smagt JJ, Gorlin RJ, Burgess SM, Bardwell VJ, Black GC, et al. Oculofaciocardiodental and Lenz microphthalmia syndromes result from distinct classes of mutations in BCOR. Nature Genetics. 36: 411-6. PMID 15004558 DOI: 10.1038/Ng1321 |
0.137 |
|
| 2023 |
Yiew NKH, Ferguson D, Cho K, Deja S, Jarasvaraparn C, Lutkewitte AJ, Mukherjee S, Fu X, Singer JM, Patti GJ, Burgess SC, Finck BN. Effects of hepatic mitochondrial pyruvate carrier deficiency on de novo lipogenesis and glycerol-mediated gluconeogenesis in mice. Biorxiv : the Preprint Server For Biology. PMID 36824879 DOI: 10.1101/2023.02.17.528992 |
0.135 |
|
| 2009 |
Jao LE, Burgess SM. Production of pseudotyped retrovirus and the generation of proviral transgenic zebrafish. Methods in Molecular Biology (Clifton, N.J.). 546: 13-30. PMID 19378095 DOI: 10.1007/978-1-60327-977-2_2 |
0.133 |
|
| 2023 |
García-López JP, Grimaldi A, Chen Z, Meneses C, Bravo-Tello K, Bresciani E, Banderas A, Burgess SM, Hernández PP, Feijoo CG. Ontogenetically distinct neutrophils differ in function and transcriptional profile in zebrafish. Nature Communications. 14: 4942. PMID 37582932 DOI: 10.1038/s41467-023-40662-7 |
0.133 |
|
| 2008 |
Ronnebaum SM, Joseph JW, Ilkayeva O, Burgess SC, Lu D, Becker TC, Sherry AD, Newgard CB. Chronic suppression of acetyl-CoA carboxylase 1 in beta-cells impairs insulin secretion via inhibition of glucose rather than lipid metabolism. The Journal of Biological Chemistry. 283: 14248-56. PMID 18381287 DOI: 10.1074/Jbc.M800119200 |
0.132 |
|
| 2007 |
Inagaki T, Dutchak P, Zhao G, Ding X, Gautron L, Parameswara V, Li Y, Goetz R, Mohammadi M, Esser V, Elmquist JK, Gerard RD, Burgess SC, Hammer RE, Mangelsdorf DJ, et al. Endocrine regulation of the fasting response by PPARalpha-mediated induction of fibroblast growth factor 21. Cell Metabolism. 5: 415-25. PMID 17550777 DOI: 10.1016/J.Cmet.2007.05.003 |
0.132 |
|
| 2021 |
Nagar D, James TK, Mishra R, Guha S, Burgess SM, Ghose A. The Formin Fmn2b Is Required for the Development of an Excitatory Interneuron Module in the Zebrafish Acoustic Startle Circuit. Eneuro. PMID 34193512 DOI: 10.1523/ENEURO.0329-20.2021 |
0.127 |
|
| 2012 |
Chambers KT, Chen Z, Crawford PA, Fu X, Burgess SC, Lai L, Leone TC, Kelly DP, Finck BN. Liver-specific PGC-1beta deficiency leads to impaired mitochondrial function and lipogenic response to fasting-refeeding. Plos One. 7: e52645. PMID 23285128 DOI: 10.1371/Journal.Pone.0052645 |
0.126 |
|
| 2007 |
Rogoff D, Ryder JW, Black K, Yan Z, Burgess SC, McMillan DR, White PC. Abnormalities of glucose homeostasis and the hypothalamic-pituitary-adrenal axis in mice lacking hexose-6-phosphate dehydrogenase. Endocrinology. 148: 5072-80. PMID 17656460 DOI: 10.1210/En.2007-0593 |
0.126 |
|
| 2017 |
Rauckhorst AJ, Gray LR, Sheldon RD, Fu X, Pewa AD, Feddersen CR, Dupuy AJ, Gibson-Corley KN, Cox JE, Burgess SC, Taylor EB. The mitochondrial pyruvate carrier mediates high fat diet-induced increases in hepatic TCA cycle capacity. Molecular Metabolism. 6: 1468-1479. PMID 29107293 DOI: 10.1016/J.Molmet.2017.09.002 |
0.124 |
|
| 2021 |
Colón-Cruz L, Rodriguez-Morales R, Santana-Cruz A, Cantres-Velez J, Torrado-Tapias A, Lin SJ, Yudowski G, Kensler R, Marie B, Burgess SM, Renaud O, Varshney GK, Behra M. Cnr2 Is Important for Ribbon Synapse Maturation and Function in Hair Cells and Photoreceptors. Frontiers in Molecular Neuroscience. 14: 624265. PMID 33958989 DOI: 10.3389/fnmol.2021.624265 |
0.122 |
|
| 2022 |
Deja S, Crawford PA, Burgess SC. Krebs takes a turn at cell differentiation. Cell Metabolism. 34: 658-660. PMID 35508108 DOI: 10.1016/j.cmet.2022.04.005 |
0.12 |
|
| 2011 |
Sunny NE, Parks EJ, Browning JD, Burgess SC. Excessive hepatic mitochondrial TCA cycle and gluconeogenesis in humans with nonalcoholic fatty liver disease. Cell Metabolism. 14: 804-10. PMID 22152305 DOI: 10.1016/J.Cmet.2011.11.004 |
0.12 |
|
| 2021 |
Ferla R, Alliegro M, Dell'Anno M, Nusco E, Cullen JM, Smith SN, Wolfsberg TG, O'Donnell P, Wang P, Nguyen AD, Chandler RJ, Chen Z, Burgess SM, Vite CH, Haskins ME, et al. Low incidence of hepatocellular carcinoma in mice and cats treated with systemic adeno-associated viral vectors. Molecular Therapy. Methods & Clinical Development. 20: 247-257. PMID 33473358 DOI: 10.1016/j.omtm.2020.11.015 |
0.12 |
|
| 2023 |
García-López JP, Grimaldi A, Chen Z, Meneses C, Bravo-Tello K, Bresciani E, Banderas A, Burgess SM, Hernández PP, Feijoo CG. Author Correction: Ontogenetically distinct neutrophils differ in function and transcriptional profile in zebrafish. Nature Communications. 14: 5292. PMID 37652907 DOI: 10.1038/s41467-023-41038-7 |
0.12 |
|
| 2016 |
Chandler RJ, LaFave MC, Varshney GK, Burgess SM, Venditti CP. Genotoxicity in Mice Following AAV Gene Delivery: A Safety Concern for Human Gene Therapy? Molecular Therapy : the Journal of the American Society of Gene Therapy. 24: 198-201. PMID 26906613 DOI: 10.1038/Mt.2016.17 |
0.119 |
|
| 2019 |
Fu X, Deja S, Kucejova B, Duarte JAG, McDonald JG, Burgess SC. Targeted Determination of Tissue Energy Status by LC-MS/MS. Analytical Chemistry. PMID 30938977 DOI: 10.1021/Acs.Analchem.9B00217 |
0.118 |
|
| 2023 |
Duan Q, Zheng H, Qin Y, Yan J, Wang J, Burgess SM, Fan C. Stat3 Has a Different Role in Axon Growth During Development Than It Does in Axon Regeneration After Injury. Molecular Neurobiology. PMID 37775721 DOI: 10.1007/s12035-023-03644-w |
0.118 |
|
| 2015 |
Buescher JM, Antoniewicz MR, Boros LG, Burgess SC, Brunengraber H, Clish CB, DeBerardinis RJ, Feron O, Frezza C, Ghesquiere B, Gottlieb E, Hiller K, Jones RG, Kamphorst JJ, Kibbey RG, et al. A roadmap for interpreting (13)C metabolite labeling patterns from cells. Current Opinion in Biotechnology. 34: 189-201. PMID 25731751 DOI: 10.1016/J.Copbio.2015.02.003 |
0.117 |
|
| 2013 |
Méndez-Lucas A, Duarte JA, Sunny NE, Satapati S, He T, Fu X, Bermúdez J, Burgess SC, Perales JC. PEPCK-M expression in mouse liver potentiates, not replaces, PEPCK-C mediated gluconeogenesis. Journal of Hepatology. 59: 105-13. PMID 23466304 DOI: 10.1016/J.Jhep.2013.02.020 |
0.117 |
|
| 2019 |
Kang HR, Gjorgjieva M, Smith SN, Brooks ED, Chen Z, Burgess SM, Chandler RJ, Waskowicz LR, Grady KM, Li S, Mithieux G, Venditti CP, Rajas F, Koeberl DD. Pathogenesis of Hepatic Tumors following Gene Therapy in Murine and Canine Models of Glycogen Storage Disease. Molecular Therapy. Methods & Clinical Development. 15: 383-391. PMID 31890731 DOI: 10.1016/J.Omtm.2019.10.016 |
0.116 |
|
| 2017 |
Silvers MA, Deja S, Singh N, Egnatchik RA, Sudderth J, Luo X, Beg MS, Burgess SC, DeBerardinis RJ, Boothman DA, Merritt ME. The NQO1 bioactivatable drug, β-Lapachone, alters the redox state of NQO1+ pancreatic cancer cells, causing perturbation in central carbon metabolism. The Journal of Biological Chemistry. PMID 28916726 DOI: 10.1074/Jbc.M117.813923 |
0.115 |
|
| 2021 |
Lin SJ, Vona B, Barbalho PG, Kaiyrzhanov R, Maroofian R, Petree C, Severino M, Stanley V, Varshney P, Bahena P, Alzahrani F, Alhashem A, Pagnamenta AT, Aubertin G, Estrada-Veras JI, ... ... Burgess SM, et al. Biallelic variants in KARS1 are associated with neurodevelopmental disorders and hearing loss recapitulated by the knockout zebrafish. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 34172899 DOI: 10.1038/s41436-021-01239-1 |
0.113 |
|
| 2011 |
Potthoff MJ, Boney-Montoya J, Choi M, He T, Sunny NE, Satapati S, Suino-Powell K, Xu HE, Gerard RD, Finck BN, Burgess SC, Mangelsdorf DJ, Kliewer SA. FGF15/19 regulates hepatic glucose metabolism by inhibiting the CREB-PGC-1α pathway. Cell Metabolism. 13: 729-38. PMID 21641554 DOI: 10.1016/J.Cmet.2011.03.019 |
0.109 |
|
| 2008 |
Satapati S, He T, Inagaki T, Potthoff M, Merritt ME, Esser V, Mangelsdorf DJ, Kliewer SA, Browning JD, Burgess SC. Partial resistance to peroxisome proliferator-activated receptor-alpha agonists in ZDF rats is associated with defective hepatic mitochondrial metabolism. Diabetes. 57: 2012-21. PMID 18469201 DOI: 10.2337/Db08-0226 |
0.108 |
|
| 2006 |
Jensen MV, Joseph JW, Ilkayeva O, Burgess S, Lu D, Ronnebaum SM, Odegaard M, Becker TC, Sherry AD, Newgard CB. Compensatory responses to pyruvate carboxylase suppression in islet beta-cells. Preservation of glucose-stimulated insulin secretion. The Journal of Biological Chemistry. 281: 22342-51. PMID 16740637 DOI: 10.1074/Jbc.M604350200 |
0.107 |
|
| 2008 |
Burgess SC, Iizuka K, Jeoung NH, Harris RA, Kashiwaya Y, Veech RL, Kitazume T, Uyeda K. Carbohydrate-response element-binding protein deletion alters substrate utilization producing an energy-deficient liver. The Journal of Biological Chemistry. 283: 1670-8. PMID 18042547 DOI: 10.1074/Jbc.M706540200 |
0.105 |
|
| 2006 |
Wu X, He W, Burgess SM, Clark RA, Li S. 358. Lentiviral Vector Integration in Mouse Bone Marrow Stem Cells Undergoing Gene Therapy Molecular Therapy. 13: S136. DOI: 10.1016/J.YMTHE.2006.08.416 |
0.105 |
|
| 2006 |
Ronnebaum SM, Ilkayeva O, Burgess SC, Joseph JW, Lu D, Stevens RD, Becker TC, Sherry AD, Newgard CB, Jensen MV. A pyruvate cycling pathway involving cytosolic NADP-dependent isocitrate dehydrogenase regulates glucose-stimulated insulin secretion. The Journal of Biological Chemistry. 281: 30593-602. PMID 16912049 DOI: 10.1074/Jbc.M511908200 |
0.104 |
|
| 2020 |
Beck DB, Ferrada MA, Sikora KA, Ombrello AK, Collins JC, Pei W, Balanda N, Ross DL, Ospina Cardona D, Wu Z, Patel B, Manthiram K, Groarke EM, Gutierrez-Rodrigues F, Hoffmann P, ... ... Burgess SM, et al. Somatic Mutations in and Severe Adult-Onset Autoinflammatory Disease. The New England Journal of Medicine. PMID 33108101 DOI: 10.1056/NEJMoa2026834 |
0.104 |
|
| 2002 |
Newgard CB, Lu D, Jensen MV, Schissler J, Boucher A, Burgess S, Sherry AD. Stimulus/secretion coupling factors in glucose-stimulated insulin secretion: Insights gained from a multidisciplinary approach Diabetes. 51: S389-S393. PMID 12475781 DOI: 10.2337/Diabetes.51.2007.S389 |
0.102 |
|
| 2014 |
Baskin KK, Grueter CE, Kusminski CM, Holland WL, Bookout AL, Satapati S, Kong YM, Burgess SC, Malloy CR, Scherer PE, Newgard CB, Bassel-Duby R, Olson EN. MED13-dependent signaling from the heart confers leanness by enhancing metabolism in adipose tissue and liver. Embo Molecular Medicine. 6: 1610-21. PMID 25422356 DOI: 10.15252/Emmm.201404218 |
0.102 |
|
| 2023 |
Goncalves RLS, Wang ZB, Inouye KE, Lee GY, Fu X, Saksi J, Rosique C, Parlakgul G, Arruda AP, Hui ST, Loperena MC, Burgess SC, Graupera I, Hotamisligil GS. Ubiquinone deficiency drives reverse electron transport to disrupt hepatic metabolic homeostasis in obesity. Biorxiv : the Preprint Server For Biology. PMID 36865319 DOI: 10.1101/2023.02.21.528863 |
0.102 |
|
| 2020 |
Wen M, Feron R, Pan Q, Guguin J, Jouanno E, Herpin A, Klopp C, Cabau C, Zahm M, Parrinello H, Journot L, Burgess SM, Omori Y, Postlethwait JH, Schartl M, et al. Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758). Bmc Genomics. 21: 552. PMID 32781981 DOI: 10.1186/S12864-020-06959-3 |
0.1 |
|
| 2004 |
Newgard CB, Hohmeier HE, Lu D, Jensen MV, Tran VV, Chen G, Burgess S, Sherry AD. Understanding of basic mechanisms of beta-cell function and survival: prelude to new diabetes therapies Cell Biochemistry and Biophysics. 40: 159-168. PMID 15289651 DOI: 10.1385/Cbb:40:3:159 |
0.1 |
|
| 2012 |
Burgess SM. The changing conditions of zebrafish mutants. Proceedings of the National Academy of Sciences of the United States of America. 109: 15082-3. PMID 22949684 DOI: 10.1073/pnas.1212832109 |
0.099 |
|
| 2016 |
Morris EM, Meers GM, Koch LG, Britton SL, Fletcher JA, Shankar K, Fu X, Burgess SC, Ibdah JA, Rector RS, Thyfault JP. Aerobic capacity and hepatic mitochondrial lipid oxidation alters susceptibility for chronic high fat diet induced hepatic steatosis. American Journal of Physiology. Endocrinology and Metabolism. ajpendo.00178.2016. PMID 27600823 DOI: 10.1152/Ajpendo.00178.2016 |
0.097 |
|
| 2016 |
Amoasii L, Holland W, Sanchez-Ortiz E, Baskin KK, Pearson M, Burgess SC, Nelson BR, Bassel-Duby R, Olson EN. A MED13-dependent skeletal muscle gene program controls systemic glucose homeostasis and hepatic metabolism. Genes & Development. 30: 434-46. PMID 26883362 DOI: 10.1101/Gad.273128.115 |
0.096 |
|
| 2012 |
Satapati S, Sunny NE, Kucejova B, Fu X, He TT, Méndez-Lucas A, Shelton JM, Perales JC, Browning JD, Burgess SC. Elevated TCA cycle function in the pathology of diet-induced hepatic insulin resistance and fatty liver. Journal of Lipid Research. 53: 1080-92. PMID 22493093 DOI: 10.1194/Jlr.M023382 |
0.096 |
|
| 2004 |
Boucher A, Lu D, Burgess SC, Telemaque-Potts S, Jensen MV, Mulder H, Wang MY, Unger RH, Sherry AD, Newgard CB. Biochemical mechanism of lipid-induced impairment of glucose-stimulated insulin secretion and reversal with a malate analogue. The Journal of Biological Chemistry. 279: 27263-71. PMID 15073188 DOI: 10.1074/Jbc.M401167200 |
0.096 |
|
| 2006 |
Burgess SC, Leone TC, Wende AR, Croce MA, Chen Z, Sherry AD, Malloy CR, Finck BN. Diminished hepatic gluconeogenesis via defects in tricarboxylic acid cycle flux in peroxisome proliferator-activated receptor gamma coactivator-1alpha (PGC-1alpha)-deficient mice. The Journal of Biological Chemistry. 281: 19000-8. PMID 16670093 DOI: 10.1074/Jbc.M600050200 |
0.095 |
|
| 2021 |
Inigo M, Deja S, Burgess SC. Ins and Outs of the TCA Cycle: The Central Role of Anaplerosis. Annual Review of Nutrition. PMID 34270333 DOI: 10.1146/annurev-nutr-120420-025558 |
0.095 |
|
| 2001 |
Dizdaroglu M, Burgess SM, Jaruga P, Hazra TK, Rodriguez H, Lloyd RS. Substrate specificity and excision kinetics of Escherichia coli endonuclease VIII (Nei) for modified bases in DNA damaged by free radicals. Biochemistry. 40: 12150-6. PMID 11580290 DOI: 10.1021/BI015552O |
0.093 |
|
| 2021 |
Deja S, Kucejova B, Fu X, Browning JD, Young JD, Burgess S. In Vivo Estimation of Ketogenesis Using Metabolic Flux Analysis-Technical Aspects and Model Interpretation. Metabolites. 11. PMID 33924948 DOI: 10.3390/metabo11050279 |
0.092 |
|
| 2004 |
Burgess SC, Hausler N, Merritt M, Jeffrey FM, Storey C, Milde A, Koshy S, Lindner J, Magnuson MA, Malloy CR, Sherry AD. Impaired tricarboxylic acid cycle activity in mouse livers lacking cytosolic phosphoenolpyruvate carboxykinase. The Journal of Biological Chemistry. 279: 48941-9. PMID 15347677 DOI: 10.1074/Jbc.M407120200 |
0.091 |
|
| 2016 |
Kucejova B, Duarte J, Satapati S, Fu X, Ilkayeva O, Newgard CB, Brugarolas J, Burgess SC. Hepatic mTORC1 Opposes Impaired Insulin Action to Control Mitochondrial Metabolism in Obesity. Cell Reports. PMID 27346353 DOI: 10.1016/J.Celrep.2016.06.006 |
0.089 |
|
| 2019 |
Deja S, Fu X, Fletcher JA, Kucejova B, Browning JD, Young JD, Burgess SC. Simultaneous tracers and a unified model of positional and mass isotopomers for quantification of metabolic flux in liver. Metabolic Engineering. PMID 31891762 DOI: 10.1016/J.Ymben.2019.12.005 |
0.088 |
|
| 2006 |
Merritt ME, Burgess SC, Spitzer TD. Adiabatic JHSQC for 13C isotopomer analysis. Magnetic Resonance in Chemistry : Mrc. 44: 463-6. PMID 16408316 DOI: 10.1002/Mrc.1765 |
0.088 |
|
| 2015 |
Walia JS, Altaleb N, Bello A, Kruck C, LaFave MC, Varshney GK, Burgess SM, Chowdhury B, Hurlbut D, Hemming R, Kobinger GP, Triggs-Raine B. Long-term correction of sandhoff disease following intravenous delivery of rAAV9 to mouse neonates. Molecular Therapy : the Journal of the American Society of Gene Therapy. 23: 414-22. PMID 25515709 DOI: 10.1038/Mt.2014.240 |
0.088 |
|
| 2016 |
Satapati S, Kucejova B, Duarte JA, Fletcher JA, Reynolds L, Sunny NE, He T, Nair LA, Livingston KA, Fu X, Merritt ME, Sherry AD, Malloy CR, Shelton JM, Lambert J, ... ... Burgess SC, et al. Mitochondrial metabolism mediates oxidative stress and inflammation in fatty liver. The Journal of Clinical Investigation. 126: 1605. PMID 27035816 DOI: 10.1172/Jci86695 |
0.087 |
|
| 2008 |
Zhao G, Jeoung NH, Burgess SC, Rosaaen-Stowe KA, Inagaki T, Latif S, Shelton JM, McAnally J, Bassel-Duby R, Harris RA, Richardson JA, Kliewer SA. Overexpression of pyruvate dehydrogenase kinase 4 in heart perturbs metabolism and exacerbates calcineurin-induced cardiomyopathy. American Journal of Physiology. Heart and Circulatory Physiology. 294: H936-43. PMID 18083902 DOI: 10.1152/Ajpheart.00870.2007 |
0.084 |
|
| 2018 |
Wu CY, Satapati S, Gui W, Wynn RM, Sharma G, Lou M, Qi X, Burgess SC, Malloy C, Khemtong C, Sherry AD, Chuang D, Merritt ME. A Novel Inhibitor of Pyruvate Dehydrogenase Kinase Stimulates Myocardial Carbohydrate Oxidation in Diet-Induced Obesity. The Journal of Biological Chemistry. PMID 29739849 DOI: 10.1074/Jbc.Ra118.002838 |
0.083 |
|
| 2024 |
Deja S, Fletcher JA, Kim CW, Kucejova B, Fu X, Mizerska M, Villegas M, Pudelko-Malik N, Browder N, Inigo-Vollmer M, Menezes CJ, Mishra P, Berglund ED, Browning JD, Thyfault JP, ... Burgess SC, et al. Hepatic malonyl-CoA synthesis restrains gluconeogenesis by suppressing fat oxidation, pyruvate carboxylation, and amino acid availability. Cell Metabolism. PMID 38447582 DOI: 10.1016/j.cmet.2024.02.004 |
0.082 |
|
| 2022 |
Martino MR, Gutiérrez-Aguilar M, Yiew NKH, Lutkewitte AJ, Singer JM, McCommis KS, Ferguson D, Liss KHH, Yoshino J, Renkemeyer MK, Smith GI, Cho K, Fletcher JA, Klein S, Patti GJ, Burgess SC, et al. Silencing alanine transaminase 2 in diabetic liver attenuates hyperglycemia by reducing gluconeogenesis from amino acids. Cell Reports. 39: 110733. PMID 35476997 DOI: 10.1016/j.celrep.2022.110733 |
0.082 |
|
| 2010 |
Sunny NE, Satapati S, Fu X, He T, Mehdibeigi R, Spring-Robinson C, Duarte J, Potthoff MJ, Browning JD, Burgess SC. Progressive adaptation of hepatic ketogenesis in mice fed a high-fat diet. American Journal of Physiology. Endocrinology and Metabolism. 298: E1226-35. PMID 20233938 DOI: 10.1152/Ajpendo.00033.2010 |
0.081 |
|
| 2002 |
Lu D, Mulder H, Zhao P, Burgess SC, Jensen MV, Kamzolova S, Newgard CB, Sherry AD. 13C NMR isotopomer analysis reveals a connection between pyruvate cycling and glucose-stimulated insulin secretion (GSIS). Proceedings of the National Academy of Sciences of the United States of America. 99: 2708-13. PMID 11880625 DOI: 10.1073/Pnas.052005699 |
0.081 |
|
| 2021 |
Fu X, Deja S, Fletcher JA, Anderson NN, Mizerska M, Vale G, Browning JD, Horton JD, McDonald JG, Mitsche MA, Burgess SC. Measurement of lipogenic flux by deuterium resolved mass spectrometry. Nature Communications. 12: 3756. PMID 34145255 DOI: 10.1038/s41467-021-23958-4 |
0.081 |
|
| 2021 |
Luo F, Smagris E, Martin S, Vale G, McDonald JG, Fletcher JA, Burgess SC, Hobbs HH, Cohen JC. Hepatic TM6SF2 is Required for Lipidation of VLDL in a Pre-Golgi Compartment in Mice and Rats. Cellular and Molecular Gastroenterology and Hepatology. PMID 34923175 DOI: 10.1016/j.jcmgh.2021.12.008 |
0.08 |
|
| 2005 |
Burgess SC, Jeffrey FM, Storey C, Milde A, Hausler N, Merritt ME, Mulder H, Holm C, Sherry AD, Malloy CR. Effect of murine strain on metabolic pathways of glucose production after brief or prolonged fasting. American Journal of Physiology. Endocrinology and Metabolism. 289: E53-61. PMID 15797985 DOI: 10.1152/Ajpendo.00601.2004 |
0.08 |
|
| 2017 |
Lan T, Morgan DA, Rahmouni K, Sonoda J, Fu X, Burgess SC, Holland WL, Kliewer SA, Mangelsdorf DJ. FGF19, FGF21, and an FGFR1/β-Klotho-Activating Antibody Act on the Nervous System to Regulate Body Weight and Glycemia. Cell Metabolism. PMID 28988823 DOI: 10.1016/J.Cmet.2017.09.005 |
0.079 |
|
| 2017 |
Ragavan M, Kirpich A, Fu X, Burgess SC, McIntyre LM, Merritt ME. A Comprehensive Analysis of Myocardial Substrate Preference Emphasizes the Need For a Synchronized Fluxomic/Metabolomic Research Design. American Journal of Physiology. Heart and Circulatory Physiology. ajpheart.00016.2017. PMID 28411229 DOI: 10.1152/Ajpheart.00016.2017 |
0.078 |
|
| 2007 |
Burgess SC, He T, Yan Z, Lindner J, Sherry AD, Malloy CR, Browning JD, Magnuson MA. Cytosolic phosphoenolpyruvate carboxykinase does not solely control the rate of hepatic gluconeogenesis in the intact mouse liver. Cell Metabolism. 5: 313-20. PMID 17403375 DOI: 10.1016/J.Cmet.2007.03.004 |
0.077 |
|
| 2021 |
Rahim M, Ragavan M, Deja S, Merritt ME, Burgess SC, Young JD. INCA 2.0: A tool for integrated, dynamic modeling of NMR- and MS-based isotopomer measurements and rigorous metabolic flux analysis. Metabolic Engineering. 69: 275-285. PMID 34965470 DOI: 10.1016/j.ymben.2021.12.009 |
0.077 |
|
| 2018 |
Giannelou A, Wang H, Zhou Q, Park YH, Abu-Asab MS, Ylaya K, Stone DL, Sediva A, Sleiman R, Sramkova L, Bhatla D, Serti E, Tsai WL, Yang D, Bishop K, ... ... Burgess SM, et al. Aberrant tRNA processing causes an autoinflammatory syndrome responsive to TNF inhibitors. Annals of the Rheumatic Diseases. PMID 29358286 DOI: 10.1136/Annrheumdis-2017-212401 |
0.077 |
|
| 2005 |
Yu X, Burgess SC, Ge H, Wong KK, Nassem RH, Garry DJ, Sherry AD, Malloy CR, Berger JP, Li C. Inhibition of cardiac lipoprotein utilization by transgenic overexpression of Angptl4 in the heart. Proceedings of the National Academy of Sciences of the United States of America. 102: 1767-72. PMID 15659544 DOI: 10.1073/Pnas.0409564102 |
0.074 |
|
| 2008 |
Burgess SC, Chandramouli V, Browning JD, Schumann WC, Previs SF. Complicating factors in the application of the "average method" for determining the contribution of gluconeogenesis. Journal of Applied Physiology (Bethesda, Md. : 1985). 104: 1852-3; author reply. PMID 18523054 DOI: 10.1152/Japplphysiol.90406.2008 |
0.073 |
|
| 2020 |
Wang L, Astone M, Alam SK, Zhu Z, Pei W, Frank DA, Burgess SM, Hoeppner LH. Suppressing STAT3 activity protects the endothelial barrier from VEGF-mediated vascular permeability. Biorxiv : the Preprint Server For Biology. PMID 33140053 DOI: 10.1101/2020.10.27.358374 |
0.073 |
|
| 2016 |
Semakova J, Hyroššová P, Méndez-Lucas A, Cutz E, Bermudez J, Burgess S, Alcántara S, Perales JC. PEPCK-C reexpression in the liver counters neonatal hypoglycemia in Pck1 (del/del) mice, unmasking role in non-gluconeogenic tissues. Journal of Physiology and Biochemistry. PMID 27785616 DOI: 10.1007/S13105-016-0528-Y |
0.073 |
|
| 2017 |
Kim CW, Addy C, Kusunoki J, Anderson NN, Deja S, Fu X, Burgess SC, Li C, Chakravarthy M, Previs S, Milstein S, Fitzgerald K, Kelley DE, Horton JD. Acetyl CoA Carboxylase Inhibition Reduces Hepatic Steatosis but Elevates Plasma Triglycerides in Mice and Humans: A Bedside to Bench Investigation. Cell Metabolism. 26: 394-406.e6. PMID 28768177 DOI: 10.1016/J.Cmet.2017.07.009 |
0.071 |
|
| 2007 |
Joseph JW, Odegaard ML, Ronnebaum SM, Burgess SC, Muehlbauer J, Sherry AD, Newgard CB. Normal flux through ATP-citrate lyase or fatty acid synthase is not required for glucose-stimulated insulin secretion. The Journal of Biological Chemistry. 282: 31592-600. PMID 17823126 DOI: 10.1074/Jbc.M706080200 |
0.071 |
|
| 2009 |
Potthoff MJ, Inagaki T, Satapati S, Ding X, He T, Goetz R, Mohammadi M, Finck BN, Mangelsdorf DJ, Kliewer SA, Burgess SC. FGF21 induces PGC-1alpha and regulates carbohydrate and fatty acid metabolism during the adaptive starvation response. Proceedings of the National Academy of Sciences of the United States of America. 106: 10853-8. PMID 19541642 DOI: 10.1073/Pnas.0904187106 |
0.071 |
|
| 2012 |
Lee Y, Berglund ED, Wang MY, Fu X, Yu X, Charron MJ, Burgess SC, Unger RH. Metabolic manifestations of insulin deficiency do not occur without glucagon action. Proceedings of the National Academy of Sciences of the United States of America. 109: 14972-6. PMID 22891336 DOI: 10.1073/Pnas.1205983109 |
0.071 |
|
| 2019 |
Cappel DA, Deja S, Duarte JAG, Kucejova B, Iñigo M, Fletcher JA, Fu X, Berglund ED, Liu T, Elmquist JK, Hammer S, Mishra P, Browning JD, Burgess SC. Pyruvate-Carboxylase-Mediated Anaplerosis Promotes Antioxidant Capacity by Sustaining TCA Cycle and Redox Metabolism in Liver. Cell Metabolism. PMID 31006591 DOI: 10.1016/J.Cmet.2019.03.014 |
0.071 |
|
| 2014 |
Duarte JA, Carvalho F, Pearson M, Horton JD, Browning JD, Jones JG, Burgess SC. A high-fat diet suppresses de novo lipogenesis and desaturation but not elongation and triglyceride synthesis in mice. Journal of Lipid Research. 55: 2541-53. PMID 25271296 DOI: 10.1194/Jlr.M052308 |
0.069 |
|
| 2018 |
Potts A, Uchida A, Deja S, Berglund ED, Kucejova B, Duarte JAG, Fu X, Browning JD, Magnuson MA, Burgess SC. Cytosolic Phosphoenolpyruvate Carboxykinase as a Cataplerotic Pathway in the Small Intestine. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 29631378 DOI: 10.1152/Ajpgi.00039.2018 |
0.069 |
|
| 2015 |
Satapati S, Kucejova B, Duarte JA, Fletcher JA, Reynolds L, Sunny NE, He T, Nair LA, Livingston K, Fu X, Merritt ME, Sherry AD, Malloy CR, Shelton JM, Lambert J, ... ... Burgess SC, et al. Mitochondrial metabolism mediates oxidative stress and inflammation in fatty liver. The Journal of Clinical Investigation. PMID 26571396 DOI: 10.1172/Jci82204 |
0.066 |
|
| 2023 |
Onodera T, Wang MY, Rutkowski JM, Deja S, Chen S, Balzer MS, Kim DS, Sun X, An YA, Field BC, Lee C, Matsuo EI, Mizerska M, Sanjana I, Fujiwara N, ... ... Burgess SC, et al. Endogenous renal adiponectin drives gluconeogenesis through enhancing pyruvate and fatty acid utilization. Nature Communications. 14: 6531. PMID 37848446 DOI: 10.1038/s41467-023-42188-4 |
0.065 |
|
| 2011 |
Lubag AJ, De Leon-Rodriguez LM, Burgess SC, Sherry AD. Noninvasive MRI of β-cell function using a Zn2+-responsive contrast agent. Proceedings of the National Academy of Sciences of the United States of America. 108: 18400-5. PMID 22025712 DOI: 10.1073/Pnas.1109649108 |
0.065 |
|
| 2013 |
Zechner JF, Mirshahi UL, Satapati S, Berglund ED, Rossi J, Scott MM, Still CD, Gerhard GS, Burgess SC, Mirshahi T, Aguirre V. Weight-independent effects of roux-en-Y gastric bypass on glucose homeostasis via melanocortin-4 receptors in mice and humans. Gastroenterology. 144: 580-590.e7. PMID 23159449 DOI: 10.1053/J.Gastro.2012.11.022 |
0.065 |
|
| 2017 |
Morris EM, McCoin CS, Allen JA, Gastecki ML, Koch LG, Britton SL, Fletcher JA, Fu X, Ding WX, Burgess SC, Rector RS, Thyfault JP. Aerobic capacity mediates susceptibility for the transition from steatosis to steatohepatitis. The Journal of Physiology. PMID 28504310 DOI: 10.1113/Jp274281 |
0.064 |
|
| 2013 |
Potthoff MJ, Potts A, He T, Duarte JA, Taussig R, Mangelsdorf DJ, Kliewer SA, Burgess SC. Colesevelam suppresses hepatic glycogenolysis by TGR5-mediated induction of GLP-1 action in DIO mice. American Journal of Physiology. Gastrointestinal and Liver Physiology. 304: G371-80. PMID 23257920 DOI: 10.1152/Ajpgi.00400.2012 |
0.063 |
|
| 2019 |
Fletcher JA, Deja S, Satapati S, Fu X, Burgess SC, Browning JD. Impaired ketogenesis and increased acetyl-CoA oxidation promote hyperglycemia in human fatty liver. Jci Insight. 5. PMID 31012869 DOI: 10.1172/Jci.Insight.127737 |
0.062 |
|
| 2012 |
Browning JD, Burgess SC. Use of (2)H(2)O for estimating rates of gluconeogenesis: determination and correction of error due to transaldolase exchange. American Journal of Physiology. Endocrinology and Metabolism. 303: E1304-12. PMID 23032685 DOI: 10.1152/Ajpendo.00306.2012 |
0.06 |
|
| 2013 |
Ramos-Roman MA, Burgess SC, Browning JD. Metabolomics, stable isotopes, and A-β+ ketosis-prone diabetes. Diabetes. 62: 682-4. PMID 23431008 DOI: 10.2337/Db12-1347 |
0.059 |
|
| 2019 |
Lutkewitte AJ, Burgess SC, Finck BN. Fatty Acid Desaturation Gets a NAD Reputation. Cell Metabolism. 29: 790-792. PMID 30943390 DOI: 10.1016/J.Cmet.2019.03.007 |
0.059 |
|
| 2003 |
Burgess SC, Weis B, Jones JG, Smith E, Merritt ME, Margolis D, Dean Sherry A, Malloy CR. Noninvasive evaluation of liver metabolism by 2H and 13C NMR isotopomer analysis of human urine. Analytical Biochemistry. 312: 228-34. PMID 12531210 DOI: 10.1016/S0003-2697(02)00465-7 |
0.059 |
|
| 2015 |
Moreno KX, Moore CL, Burgess SC, Sherry AD, Malloy CR, Merritt ME. Production of hyperpolarized (13)CO2 from [1-(13)C]pyruvate in perfused liver does reflect total anaplerosis but is not a reliable biomarker of glucose production. Metabolomics : Official Journal of the Metabolomic Society. 11: 1144-1156. PMID 26543443 DOI: 10.1007/S11306-014-0768-1 |
0.058 |
|
| 2015 |
Burgess SC, Merritt ME, Jones JG, Browning JD, Sherry AD, Malloy CR. Limitations of detection of anaplerosis and pyruvate cycling from metabolism of [1-(13)C] acetate. Nature Medicine. 21: 108-9. PMID 25654596 DOI: 10.1038/Nm.3789 |
0.057 |
|
| 2014 |
Zhou Q, Yang D, Ombrello AK, Zavialov AV, Toro C, Zavialov AV, Stone DL, Chae JJ, Rosenzweig SD, Bishop K, Barron KS, Kuehn HS, Hoffmann P, Negro A, Tsai WL, ... ... Burgess SM, et al. Early-onset stroke and vasculopathy associated with mutations in ADA2. The New England Journal of Medicine. 370: 911-20. PMID 24552284 DOI: 10.1056/Nejmoa1307361 |
0.057 |
|
| 2014 |
Moreno KX, Satapati S, DeBerardinis RJ, Burgess SC, Malloy CR, Merritt ME. Real-time detection of hepatic gluconeogenic and glycogenolytic states using hyperpolarized [2-13C]dihydroxyacetone. The Journal of Biological Chemistry. 289: 35859-67. PMID 25352600 DOI: 10.1074/Jbc.M114.613265 |
0.056 |
|
| 2014 |
Purmal C, Kucejova B, Sherry AD, Burgess SC, Malloy CR, Merritt ME. Propionate stimulates pyruvate oxidation in the presence of acetate. American Journal of Physiology. Heart and Circulatory Physiology. 307: H1134-41. PMID 25320331 DOI: 10.1152/Ajpheart.00407.2014 |
0.056 |
|
| 2005 |
Peltz M, He TT, Adams GA, Koshy S, Burgess SC, Chao RY, Meyer DM, Jessen ME. Perfusion preservation maintains myocardial ATP levels and reduces apoptosis in an ex vivo rat heart transplantation model. Surgery. 138: 795-805. PMID 16269311 DOI: 10.1016/J.Surg.2005.06.040 |
0.055 |
|
| 2021 |
Wang L, Astone M, Alam SK, Zhu Z, Pei W, Frank DA, Burgess SM, Hoeppner LH. Suppressing STAT3 activity protects the endothelial barrier from VEGF-mediated vascular permeability. Disease Models & Mechanisms. PMID 34542605 DOI: 10.1242/dmm.049029 |
0.054 |
|
| 2003 |
She P, Burgess SC, Shiota M, Flakoll P, Donahue EP, Malloy CR, Sherry AD, Magnuson MA. Mechanisms by which liver-specific PEPCK knockout mice preserve euglycemia during starvation. Diabetes. 52: 1649-54. PMID 12829628 DOI: 10.2337/Diabetes.52.7.1649 |
0.053 |
|
| 2011 |
Merritt ME, Harrison C, Sherry AD, Malloy CR, Burgess SC. Flux through hepatic pyruvate carboxylase and phosphoenolpyruvate carboxykinase detected by hyperpolarized 13C magnetic resonance. Proceedings of the National Academy of Sciences of the United States of America. 108: 19084-9. PMID 22065779 DOI: 10.1073/Pnas.1111247108 |
0.053 |
|
| 2003 |
Jin ES, Uyeda K, Kawaguchi T, Burgess SC, Malloy CR, Sherry AD. Increased hepatic fructose 2,6-bisphosphate after an oral glucose load does not affect gluconeogenesis. The Journal of Biological Chemistry. 278: 28427-33. PMID 12764148 DOI: 10.1074/Jbc.M302134200 |
0.051 |
|
| 2008 |
Jensen MV, Joseph JW, Ronnebaum SM, Burgess SC, Sherry AD, Newgard CB. Metabolic cycling in control of glucose-stimulated insulin secretion. American Journal of Physiology. Endocrinology and Metabolism. 295: E1287-97. PMID 18728221 DOI: 10.1152/Ajpendo.90604.2008 |
0.05 |
|
| 2018 |
Pop LM, Mari A, Zhao TJ, Mitchell L, Burgess S, Li X, Adams-Huet B, Lingvay I. Roux-en-Y Gastric Bypass Compared to Equivalent Diet Restriction: Mechanistic Insights into Diabetes Remission. Diabetes, Obesity & Metabolism. PMID 29532631 DOI: 10.1111/Dom.13287 |
0.048 |
|
| 2003 |
Merritt M, Bretthorst GL, Burgess SC, Sherry AD, Malloy CR. Sources of plasma glucose by automated Bayesian analysis of 2H NMR spectra. Magnetic Resonance in Medicine. 50: 659-63. PMID 14523948 DOI: 10.1002/Mrm.10577 |
0.048 |
|
| 2022 |
Rome FI, Shobert GL, Voigt WC, Stagg DB, Puchalska P, Burgess SC, Crawford PA, Hughey CC. Loss of hepatic phosphoenolpyruvate carboxykinase 1 dysregulates metabolic responses to acute exercise but enhances adaptations to exercise training in mice. American Journal of Physiology. Endocrinology and Metabolism. PMID 36351254 DOI: 10.1152/ajpendo.00222.2022 |
0.047 |
|
| 2008 |
Browning JD, Weis B, Davis J, Satapati S, Merritt M, Malloy CR, Burgess SC. Alterations in hepatic glucose and energy metabolism as a result of calorie and carbohydrate restriction. Hepatology (Baltimore, Md.). 48: 1487-96. PMID 18925642 DOI: 10.1002/Hep.22504 |
0.045 |
|
| 2012 |
Browning JD, Baxter J, Satapati S, Burgess SC. The effect of short-term fasting on liver and skeletal muscle lipid, glucose, and energy metabolism in healthy women and men. Journal of Lipid Research. 53: 577-86. PMID 22140269 DOI: 10.1194/Jlr.P020867 |
0.044 |
|
| 2006 |
Hausler N, Browning J, Merritt M, Storey C, Milde A, Jeffrey FM, Sherry AD, Malloy CR, Burgess SC. Effects of insulin and cytosolic redox state on glucose production pathways in the isolated perfused mouse liver measured by integrated 2H and 13C NMR. The Biochemical Journal. 394: 465-73. PMID 16288601 DOI: 10.1042/Bj20051174 |
0.044 |
|
| 2006 |
Browning JD, Davis J, Saboorian MH, Burgess SC. A low-carbohydrate diet rapidly and dramatically reduces intrahepatic triglyceride content. Hepatology (Baltimore, Md.). 44: 487-8. PMID 16871586 DOI: 10.1002/Hep.21264 |
0.042 |
|
| 2009 |
Kley S, Hoenig M, Glushka J, Jin ES, Burgess SC, Waldron M, Jordan ET, Prestegard JH, Ferguson DC, Wu S, Olson DE. The impact of obesity, sex, and diet on hepatic glucose production in cats. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 296: R936-43. PMID 19193946 DOI: 10.1152/Ajpregu.90771.2008 |
0.042 |
|
| 2013 |
Wan M, Leavens KF, Hunter RW, Koren S, von Wilamowitz-Moellendorff A, Lu M, Satapati S, Chu Q, Sakamoto K, Burgess SC, Birnbaum MJ. A noncanonical, GSK3-independent pathway controls postprandial hepatic glycogen deposition. Cell Metabolism. 18: 99-105. PMID 23823480 DOI: 10.1016/J.Cmet.2013.06.001 |
0.042 |
|
| 2003 |
Burgess SC, Nuss M, Chandramouli V, Hardin DS, Rice M, Landau BR, Malloy CR, Sherry AD. Analysis of gluconeogenic pathways in vivo by distribution of 2H in plasma glucose: comparison of nuclear magnetic resonance and mass spectrometry. Analytical Biochemistry. 318: 321-4. PMID 12814639 DOI: 10.1016/S0003-2697(03)00158-1 |
0.041 |
|
| 2017 |
Kim CW, Addy C, Kusunoki J, Anderson NN, Deja S, Fu X, Burgess SC, Li C, Ruddy M, Chakravarthy M, Previs S, Milstein S, Fitzgerald K, Kelley DE, Horton JD. Acetyl CoA Carboxylase Inhibition Reduces Hepatic Steatosis but Elevates Plasma Triglycerides in Mice and Humans: A Bedside to Bench Investigation. Cell Metabolism. 26: 576. PMID 28877461 DOI: 10.1016/J.Cmet.2017.08.011 |
0.036 |
|
| 2023 |
Fu X, Fletcher JA, Deja S, Inigo-Vollmer M, Burgess SC, Browning JD. Persistent fasting lipogenesis links impaired ketogenesis with citrate synthesis in humans with non-alcoholic fatty liver. The Journal of Clinical Investigation. PMID 36928190 DOI: 10.1172/JCI167442 |
0.035 |
|
| 2006 |
Stowe KA, Burgess SC, Merritt M, Sherry AD, Malloy CR. Storage and oxidation of long-chain fatty acids in the C57/BL6 mouse heart as measured by NMR spectroscopy. Febs Letters. 580: 4282-7. PMID 16831433 DOI: 10.1016/J.Febslet.2006.06.068 |
0.034 |
|
| 2011 |
Browning JD, Baker JA, Rogers T, Davis J, Satapati S, Burgess SC. Short-term weight loss and hepatic triglyceride reduction: evidence of a metabolic advantage with dietary carbohydrate restriction. The American Journal of Clinical Nutrition. 93: 1048-52. PMID 21367948 DOI: 10.3945/Ajcn.110.007674 |
0.032 |
|
| 2004 |
Jin ES, Jones JG, Merritt M, Burgess SC, Malloy CR, Sherry AD. Glucose production, gluconeogenesis, and hepatic tricarboxylic acid cycle fluxes measured by nuclear magnetic resonance analysis of a single glucose derivative. Analytical Biochemistry. 327: 149-55. PMID 15051530 DOI: 10.1016/J.Ab.2003.12.036 |
0.032 |
|
| 2006 |
Chevalier S, Burgess SC, Malloy CR, Gougeon R, Marliss EB, Morais JA. The greater contribution of gluconeogenesis to glucose production in obesity is related to increased whole-body protein catabolism. Diabetes. 55: 675-81. PMID 16505230 DOI: 10.2337/Diabetes.55.03.06.Db05-1117 |
0.029 |
|
| 2006 |
Mendes AC, Caldeira MM, Silva C, Burgess SC, Merritt ME, Gomes F, Barosa C, Delgado TC, Franco F, Monteiro P, Providencia L, Jones JG. Hepatic UDP-glucose 13C isotopomers from [U-13C]glucose: a simple analysis by 13C NMR of urinary menthol glucuronide. Magnetic Resonance in Medicine. 56: 1121-5. PMID 17036288 DOI: 10.1002/Mrm.21057 |
0.029 |
|
| 2008 |
Bock G, Schumann WC, Basu R, Burgess SC, Yan Z, Chandramouli V, Rizza RA, Landau BR. Evidence that processes other than gluconeogenesis may influence the ratio of deuterium on the fifth and third carbons of glucose: implications for the use of 2H2O to measure gluconeogenesis in humans. Diabetes. 57: 50-5. PMID 17934142 DOI: 10.2337/Db07-0694 |
0.027 |
|
| 2002 |
Zhang S, Michaudet L, Burgess S, Sherry AD. The amide protons of an ytterbium(III) dota tetraamide complex act as efficient antennae for transfer of magnetization to bulk water Angewandte Chemie - International Edition. 41: 1919-1921. PMID 19750633 DOI: 10.1002/1521-3773(20020603)41:11<1919::Aid-Anie1919>3.0.Co;2-Q |
0.027 |
|
| 2022 |
Martino MR, Gutiérrez-Aguilar M, Yiew NKH, Lutkewitte AJ, Singer JM, McCommis KS, Ferguson D, Liss KHH, Yoshino J, Renkemeyer MK, Smith GI, Cho K, Fletcher JA, Klein S, Patti GJ, ... Burgess SC, et al. Silencing alanine transaminase 2 in diabetic liver attenuates hyperglycemia by reducing gluconeogenesis from amino acids. Cell Reports. 41: 111633. PMID 36384117 DOI: 10.1016/j.celrep.2022.111633 |
0.026 |
|
| 2005 |
Jin ES, Burgess SC, Merritt ME, Sherry AD, Malloy CR. Differing mechanisms of hepatic glucose overproduction in triiodothyronine-treated rats vs. Zucker diabetic fatty rats by NMR analysis of plasma glucose. American Journal of Physiology. Endocrinology and Metabolism. 288: E654-62. PMID 15562253 DOI: 10.1152/Ajpendo.00365.2004 |
0.025 |
|
| 2005 |
Jin ES, Jones JG, Burgess SC, Merritt ME, Sherry AD, Malloy CR. Comparison of [3,4-13C2]glucose to [6,6-2H2]glucose as a tracer for glucose turnover by nuclear magnetic resonance. Magnetic Resonance in Medicine. 53: 1479-83. PMID 15906303 DOI: 10.1002/Mrm.20496 |
0.024 |
|
| 2004 |
Weis BC, Margolis D, Burgess SC, Merritt ME, Wise H, Sherry AD, Malloy CR. Glucose production pathways by 2H and 13C NMR in patients with HIV-associated lipoatrophy. Magnetic Resonance in Medicine. 51: 649-54. PMID 15065235 DOI: 10.1002/Mrm.20057 |
0.022 |
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| 2005 |
Peltz M, Hamilton TT, He TT, Adams GA, Koshy S, Burgess SC, Chao RY, Jessen ME, Meyer DM. Lung preservation solution substrate composition affects rat lung oxidative metabolism during hypothermic storage. Respiratory Physiology & Neurobiology. 148: 275-83. PMID 16143284 DOI: 10.1016/J.Resp.2005.02.010 |
0.021 |
|
| 2000 |
Burgess SM. Benchmarking for best value Proceedings of the Institution of Civil Engineers - Municipal Engineer. 139: 75-82. DOI: 10.1680/MUEN.2000.139.2.75 |
0.013 |
|
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