| Year |
Citation |
Score |
| 2024 |
Jones RE, Tice AK, Eliáš M, Eme L, Kolísko M, Nenarokov S, Pánek T, Rokas A, Salomaki E, Strassert JFH, Shen XX, Žihala D, Brown MW. Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher. Current Protocols. 4: e969. PMID 38265166 DOI: 10.1002/cpz1.969 |
0.803 |
|
| 2024 |
Fry N, Schuler GA, Jones RE, Kooienga PG, Jira V, Shepherd M, Tice AK, Brown MW. Living in the cracks: Two novel genera of Variosea (Amoebozoa) discovered on an urban sidewalk. The Journal of Eukaryotic Microbiology. e13020. PMID 38240465 DOI: 10.1111/jeu.13020 |
0.768 |
|
| 2023 |
Tice AK, Spiegel FW, Brown MW. Phylogenetic placement of the protosteloid amoeba Microglomus paxillus identifies another case of sporocarpic fruiting in Discosea (Amoebozoa). The Journal of Eukaryotic Microbiology. e12971. PMID 36825799 DOI: 10.1111/jeu.12971 |
0.834 |
|
| 2022 |
Tice AK, Brown MW. Multicellularity: Amoebae follow the leader to food. Current Biology : Cb. 32: R418-R420. PMID 35537392 DOI: 10.1016/j.cub.2022.03.067 |
0.728 |
|
| 2022 |
Azuma T, Pánek T, Tice AK, Kayama M, Kobayashi M, Miyashita H, Suzaki T, Yabuki A, Brown MW, Kamikawa R. An enigmatic stramenopile sheds light on early evolution in Ochrophyta plastid organellogenesis. Molecular Biology and Evolution. PMID 35348760 DOI: 10.1093/molbev/msac065 |
0.794 |
|
| 2021 |
Tice AK, Žihala D, Pánek T, Jones RE, Salomaki ED, Nenarokov S, Burki F, Eliáš M, Eme L, Roger AJ, Rokas A, Shen XX, Strassert JFH, Kolísko M, Brown MW. PhyloFisher: A phylogenomic package for resolving eukaryotic relationships. Plos Biology. 19: e3001365. PMID 34358228 DOI: 10.1371/journal.pbio.3001365 |
0.803 |
|
| 2021 |
Kang S, Tice AK, Stairs CW, Jones RE, Lahr DJG, Brown MW. The integrin-mediated adhesive complex in the ancestor of animals, fungi, and amoebae. Current Biology : Cb. PMID 34077702 DOI: 10.1016/j.cub.2021.04.076 |
0.795 |
|
| 2021 |
Porfírio-Sousa AL, Tice AK, Brown MW, J G Lahr D. Phylogenetic reconstruction and evolution of the Rab GTPase gene family in Amoebozoa. Small Gtpases. 1-14. PMID 33779495 DOI: 10.1080/21541248.2021.1903794 |
0.758 |
|
| 2020 |
Salomaki ED, Eme L, Brown MW, Kolisko M. Releasing uncurated datasets is essential for reproducible phylogenomics. Nature Ecology & Evolution. PMID 32884150 DOI: 10.1038/S41559-020-01296-W |
0.737 |
|
| 2020 |
Onsbring H, Tice AK, Barton BT, Brown MW, Ettema TJG. An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells. Bmc Genomics. 21: 448. PMID 32600266 DOI: 10.1186/S12864-020-06858-7 |
0.761 |
|
| 2020 |
Lawal HM, Schilde C, Kin K, Brown MW, James J, Prescott AR, Schaap P. Cold climate adaptation is a plausible cause for evolution of multicellular sporulation in Dictyostelia. Scientific Reports. 10: 8797. PMID 32472019 DOI: 10.1038/S41598-020-65709-3 |
0.41 |
|
| 2020 |
Brown MW, Tice AK. A genetic toolbox for marine protists. Nature Methods. PMID 32251395 DOI: 10.1038/S41592-020-0794-Z |
0.734 |
|
| 2019 |
Yubuki N, Galindo LJ, Reboul G, López-García P, Brown MW, Pollet N, Moreira D. Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina - Blastocystis Stramenopile Lineage. Molecular Biology and Evolution. PMID 31693153 DOI: 10.1093/Molbev/Msz250 |
0.444 |
|
| 2019 |
Burki F, Roger AJ, Brown MW, Simpson AGB. The New Tree of Eukaryotes. Trends in Ecology & Evolution. PMID 31606140 DOI: 10.1016/J.Tree.2019.08.008 |
0.697 |
|
| 2019 |
Lahr DJG, Kosakyan A, Lara E, Mitchell EAD, Morais L, Porfirio-Sousa AL, Ribeiro GM, Tice AK, Pánek T, Kang S, Brown MW. Phylogenomics and Morphological Reconstruction of Arcellinida Testate Amoebae Highlight Diversity of Microbial Eukaryotes in the Neoproterozoic. Current Biology : Cb. PMID 30827918 DOI: 10.1016/J.Cub.2019.01.078 |
0.826 |
|
| 2018 |
Schuler GA, Tice AK, Pearce RA, Foreman E, Stone J, Gammill S, Willson JD, Reading C, Silberman JD, Brown MW. Phylogeny and Classification of Novel Diversity in Sainouroidea (Cercozoa, Rhizaria) Sheds Light on a Highly Diverse and Divergent Clade. Protist. 169: 853-874. PMID 30415103 DOI: 10.1016/J.Protis.2018.08.002 |
0.829 |
|
| 2018 |
Hofstatter PG, Brown MW, Lahr DJG. Comparative genomics supports sex and meiosis in diverse Amoebozoan. Genome Biology and Evolution. PMID 30380054 DOI: 10.1093/Gbe/Evy241 |
0.388 |
|
| 2018 |
Fiore-Donno AM, Tice AK, Brown MW. A Non-Flagellated Member of the Myxogastria and Expansion of the Echinosteliida. The Journal of Eukaryotic Microbiology. PMID 30329204 DOI: 10.1111/Jeu.12694 |
0.768 |
|
| 2018 |
Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, et al. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. The Journal of Eukaryotic Microbiology. PMID 30257078 DOI: 10.1111/Jeu.12691 |
0.797 |
|
| 2018 |
Del Campo J, Kolisko M, Boscaro V, Santoferrara LF, Nenarokov S, Massana R, Guillou L, Simpson A, Berney C, de Vargas C, Brown MW, Keeling PJ, Wegener Parfrey L. EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution. Plos Biology. 16: e2005849. PMID 30222734 DOI: 10.1371/Journal.Pbio.2005849 |
0.788 |
|
| 2018 |
Schuler GA, Brown MW. Description of Armaparvus languidus n. gen. n. sp. Confirms Ultrastructural Unity of Cutosea (Amoebozoa, Evosea). The Journal of Eukaryotic Microbiology. PMID 29858563 DOI: 10.1111/Jeu.12640 |
0.42 |
|
| 2018 |
Heiss AA, Kolisko M, Ekelund F, Brown MW, Roger AJ, Simpson AGB. Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes. Royal Society Open Science. 5: 171707. PMID 29765641 DOI: 10.1098/Rsos.171707 |
0.82 |
|
| 2018 |
Brown MW, Heiss AA, Kamikawa R, Inagaki Y, Yabuki A, Tice AK, Shiratori T, Ishida KI, Hashimoto T, Simpson AGB, Roger AJ. Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group. Genome Biology and Evolution. PMID 29360967 DOI: 10.1093/Gbe/Evy014 |
0.833 |
|
| 2018 |
Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, et al. Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides. Open Biology. 8. PMID 29321239 DOI: 10.1098/Rsob.170184 |
0.403 |
|
| 2017 |
Kang S, Tice AK, Spiegel FW, Silberman JD, Pánek T, Cepicka I, Kostka M, Kosakyan A, Alcântara DM, Roger AJ, Shadwick LL, Smirnov A, Kudryavstev A, Lahr DJG, Brown MW. Between a pod and a hard test: the deep evolution of amoebae. Molecular Biology and Evolution. PMID 28505375 DOI: 10.1093/Molbev/Msx162 |
0.797 |
|
| 2017 |
Geisen S, Mitchell EA, Wilkinson DM, Adl S, Bonkowski M, Brown MW, Fiore-Donno AM, Heger TJ, Jassey VE, Krashevska V, Lahr DJ, Marcisz K, Mulot M, Payne R, Singer D, et al. Soil protistology rebooted: 30 fundamental questions to start with Soil Biology and Biochemistry. 111: 94-103. DOI: 10.1016/J.Soilbio.2017.04.001 |
0.746 |
|
| 2016 |
Tice AK, Shadwick LL, Fiore-Donno AM, Geisen S, Kang S, Schuler GA, Spiegel FW, Wilkinson KA, Bonkowski M, Dumack K, Lahr DJ, Voelcker E, Clauß S, Zhang J, Brown MW. Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group. Biology Direct. 11: 69. PMID 28031045 DOI: 10.1186/S13062-016-0171-0 |
0.805 |
|
| 2016 |
Hofstatter PG, Tice AK, Kang S, Brown MW, Lahr DJ. Evolution of bacterial recombinase A (recA) in eukaryotes explained by addition of genomic data of key microbial lineages. Proceedings. Biological Sciences. 283. PMID 27708147 DOI: 10.1098/Rspb.2016.1453 |
0.813 |
|
| 2016 |
Gawryluk RM, Kamikawa R, Stairs CW, Silberman JD, Brown MW, Roger AJ. The Earliest Stages of Mitochondrial Adaptation to Low Oxygen Revealed in a Novel Rhizarian. Current Biology : Cb. PMID 27666965 DOI: 10.1016/J.Cub.2016.08.025 |
0.771 |
|
| 2016 |
Harding T, Brown MW, Simpson AG, Roger AJ. Osmoadaptative strategy and its molecular signature in obligately halophilic heterotrophic protists. Genome Biology and Evolution. PMID 27412608 DOI: 10.1093/Gbe/Evw152 |
0.786 |
|
| 2016 |
Hamann E, Gruber-Vodicka H, Kleiner M, Tegetmeyer HE, Riedel D, Littmann S, Chen J, Milucka J, Viehweger B, Becker KW, Dong X, Stairs CW, Hinrichs KU, Brown MW, Roger AJ, et al. Environmental Breviatea harbour mutualistic Arcobacter epibionts. Nature. 534: 254-8. PMID 27279223 DOI: 10.1038/Nature18297 |
0.802 |
|
| 2016 |
Noguchi F, Tanifuji G, Brown MW, Fujikura K, Takishita K. Complex evolution of two types of cardiolipin synthase in the eukaryotic lineage stramenopiles. Molecular Phylogenetics and Evolution. PMID 27173914 DOI: 10.1016/J.Ympev.2016.05.011 |
0.391 |
|
| 2016 |
Tice AK, Silberman JD, Walthall AC, Le KN, Spiegel FW, Brown MW. Sorodiplophrys stercorea: Another Novel Lineage of Sorocarpic Multicellularity. The Journal of Eukaryotic Microbiology. PMID 26940948 DOI: 10.1111/Jeu.12311 |
0.806 |
|
| 2016 |
Bass D, Silberman JD, Brown MW, Tice AK, Jousset A, Geisen S, Hartikainen H. Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal-associated protists. Environmental Microbiology. PMID 26914587 DOI: 10.1111/1462-2920.13235 |
0.825 |
|
| 2016 |
Pánek T, Zadrobílková E, Walker G, Brown MW, Gentekaki E, Hroudová M, Kang S, Roger A, Tice AK, Vlček Č, Čepička I. First multigene analysis of Archamoebae (Amoebozoa: Conosa) robustly reveals its phylogeny and shows that Entamoebidae represents a deep lineage of the group. Molecular Phylogenetics and Evolution. PMID 26826602 DOI: 10.1016/J.Ympev.2016.01.011 |
0.827 |
|
| 2016 |
Shadwick LL, Brown MW, Tice AK, Spiegel FW. A New Amoeba with Protosteloid Fruiting: Luapeleamoeba hula n. g. n. sp. (Acanthamoebidae, Centramoebida, Amoebozoa) Acta Protozoologica. 2016: 123-134. DOI: 10.4467/16890027Ap.16.012.5744 |
0.806 |
|
| 2016 |
Walthall AC, Tice AK, Brown MW. New species of flamella (Amoebozoa, variosea, gracilipodida) isolated from a freshwater pool in Southern Mississippi, USA Acta Protozoologica. 55: 111-117. DOI: 10.4467/16890027Ap.16.010.4945 |
0.79 |
|
| 2014 |
Maguire F, Henriquez FL, Leonard G, Dacks JB, Brown MW, Richards TA. Complex patterns of gene fission in the eukaryotic folate biosynthesis pathway. Genome Biology and Evolution. 6: 2709-20. PMID 25252772 DOI: 10.1093/Gbe/Evu213 |
0.403 |
|
| 2014 |
Eme L, Sharpe SC, Brown MW, Roger AJ. On the age of eukaryotes: evaluating evidence from fossils and molecular clocks. Cold Spring Harbor Perspectives in Biology. 6. PMID 25085908 DOI: 10.1101/Cshperspect.A016139 |
0.801 |
|
| 2014 |
Watson PM, Sorrell SC, Brown MW. Ptolemeba n. gen., a novel genus of hartmannellid amoebae (Tubulinea, Amoebozoa); with an emphasis on the taxonomy of Saccamoeba. The Journal of Eukaryotic Microbiology. 61: 611-9. PMID 25040194 DOI: 10.1111/Jeu.12139 |
0.476 |
|
| 2014 |
Tanifuji G, Onodera NT, Brown MW, Curtis BA, Roger AJ, Ka-Shu Wong G, Melkonian M, Archibald JM. Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae. Bmc Genomics. 15: 374. PMID 24885563 DOI: 10.1186/1471-2164-15-374 |
0.668 |
|
| 2014 |
Stairs CW, Eme L, Brown MW, Mutsaers C, Susko E, Dellaire G, Soanes DM, van der Giezen M, Roger AJ. A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia. Current Biology : Cb. 24: 1176-86. PMID 24856215 DOI: 10.1016/J.Cub.2014.04.033 |
0.783 |
|
| 2014 |
Kudryavtsev A, Brown MW, Tice A, Spiegel FW, Pawlowski J, Anderson OR. A revision of the order Pellitida Smirnov et al., 2011 (Amoebozoa, Discosea) based on ultrastructural and molecular evidence, with description of Endostelium crystalliferum n. sp. Protist. 165: 208-29. PMID 24704663 DOI: 10.1016/J.Protis.2014.02.003 |
0.834 |
|
| 2014 |
Kamikawa R, Kolisko M, Nishimura Y, Yabuki A, Brown MW, Ishikawa SA, Ishida K, Roger AJ, Hashimoto T, Inagaki Y. Gene content evolution in Discobid mitochondria deduced from the phylogenetic position and complete mitochondrial genome of Tsukubamonas globosa. Genome Biology and Evolution. 6: 306-15. PMID 24448982 DOI: 10.1093/Gbe/Evu015 |
0.811 |
|
| 2014 |
Suga H, Torruella G, Burger G, Brown MW, Ruiz-Trillo I. Earliest Holozoan expansion of phosphotyrosine signaling. Molecular Biology and Evolution. 31: 517-28. PMID 24307687 DOI: 10.1093/Molbev/Mst241 |
0.623 |
|
| 2013 |
Brown MW, Sharpe SC, Silberman JD, Heiss AA, Lang BF, Simpson AG, Roger AJ. Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads. Proceedings. Biological Sciences / the Royal Society. 280: 20131755. PMID 23986111 DOI: 10.1098/Rspb.2013.1755 |
0.829 |
|
| 2013 |
Suga H, Chen Z, de Mendoza A, Sebé-Pedrós A, Brown MW, Kramer E, Carr M, Kerner P, Vervoort M, Sánchez-Pons N, Torruella G, Derelle R, Manning G, Lang BF, Russ C, et al. The Capsaspora genome reveals a complex unicellular prehistory of animals. Nature Communications. 4: 2325. PMID 23942320 DOI: 10.1038/Ncomms3325 |
0.767 |
|
| 2013 |
Kamikawa R, Brown MW, Nishimura Y, Sako Y, Heiss AA, Yubuki N, Gawryluk R, Simpson AG, Roger AJ, Hashimoto T, Inagaki Y. Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. Bmc Evolutionary Biology. 13: 131. PMID 23800323 DOI: 10.1186/1471-2148-13-131 |
0.777 |
|
| 2013 |
Harding T, Brown MW, Plotnikov A, Selivanova E, Park JS, Gunderson JH, Baumgartner M, Silberman JD, Roger AJ, Simpson AG. Amoeba stages in the deepest branching heteroloboseans, including Pharyngomonas: evolutionary and systematic implications. Protist. 164: 272-86. PMID 23021907 DOI: 10.1016/J.Protis.2012.08.002 |
0.798 |
|
| 2013 |
Adl SM, Simpson AGB, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss A, Hoppenrath M, Lara E, Gall LL, Lynn DH, et al. Erratum: The revised classification of eukaryotes (Journal of Eukaryotic Microbiology (2012) 59 (429-514) DOI:10.1111/j.1550-7408.2012.00644.x) Journal of Eukaryotic Microbiology. 60. DOI: 10.1111/Jeu.12033 |
0.751 |
|
| 2012 |
Adl SM, Simpson AG, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss A, Hoppenrath M, Lara E, Le Gall L, Lynn DH, et al. The revised classification of eukaryotes. The Journal of Eukaryotic Microbiology. 59: 429-93. PMID 23020233 DOI: 10.1111/J.1550-7408.2012.00644.X |
0.786 |
|
| 2012 |
Brown MW, Kolisko M, Silberman JD, Roger AJ. Aggregative multicellularity evolved independently in the eukaryotic supergroup Rhizaria. Current Biology : Cb. 22: 1123-7. PMID 22608512 DOI: 10.1016/J.Cub.2012.04.021 |
0.812 |
|
| 2012 |
Brown MW, Silberman JD, Spiegel FW. A contemporary evaluation of the acrasids (Acrasidae, Heterolobosea, Excavata). European Journal of Protistology. 48: 103-23. PMID 22154141 DOI: 10.1016/J.Ejop.2011.10.001 |
0.839 |
|
| 2011 |
Brown MW, Silberman JD, Spiegel FW. "Slime molds" among the Tubulinea (Amoebozoa): molecular systematics and taxonomy of Copromyxa. Protist. 162: 277-87. PMID 21112814 DOI: 10.1016/J.Protis.2010.09.003 |
0.82 |
|
| 2010 |
Brown MW, Silberman JD, Spiegel FW. A morphologically simple species of Acrasis (Heterolobosea, Excavata), Acrasis helenhemmesae n. sp. The Journal of Eukaryotic Microbiology. 57: 346-53. PMID 20497285 DOI: 10.1111/J.1550-7408.2010.00481.X |
0.823 |
|
| 2009 |
Shadwick LL, Spiegel FW, Shadwick JD, Brown MW, Silberman JD. Eumycetozoa = Amoebozoa?: SSUrDNA phylogeny of protosteloid slime molds and its significance for the amoebozoan supergroup. Plos One. 4: e6754. PMID 19707546 DOI: 10.1371/Journal.Pone.0006754 |
0.82 |
|
| 2009 |
Brown MW, Spiegel FW, Silberman JD. Phylogeny of the "forgotten" cellular slime mold, Fonticula alba, reveals a key evolutionary branch within Opisthokonta. Molecular Biology and Evolution. 26: 2699-709. PMID 19692665 DOI: 10.1093/Molbev/Msp185 |
0.832 |
|
| 2007 |
Brown MW, Spiegel FW, Silberman JD. Amoeba at attention: phylogenetic affinity of Sappinia pedata. The Journal of Eukaryotic Microbiology. 54: 511-9. PMID 18070328 DOI: 10.1111/J.1550-7408.2007.00292.X |
0.82 |
|
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