Mehrdad Hajibabaei, Ph.D. - Publications

2003 University of Ottawa, Ottawa, ON, Canada 
Molecular Biology, Botany Biology, Genetics

109 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zaiko A, Greenfield P, Abbott C, von Ammon U, Bilewitch J, Bunce M, Cristescu ME, Chariton A, Dowle E, Geller J, Ardura Gutierrez A, Hajibabaei M, Haggard E, Inglis GJ, Lavery SD, et al. Towards reproducible metabarcoding data - lessons from an international cross-laboratory experiment. Molecular Ecology Resources. PMID 34398515 DOI: 10.1111/1755-0998.13485  1
2021 Porter TM, Hajibabaei M. Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets. Bmc Bioinformatics. 22: 256. PMID 34011275 DOI: 10.1186/s12859-021-04180-x  1
2021 He X, Gilmore SR, Sutherland TF, Hajibabaei M, Miller KM, Westfall KM, Pawlowski J, Abbott CL. Biotic signals associated with benthic impacts of salmon farms from eDNA metabarcoding of sediments. Molecular Ecology. PMID 33481325 DOI: 10.1111/mec.15814  0.01
2020 Maitland VC, Robinson CV, Porter TM, Hajibabaei M. Freshwater diatom biomonitoring through benthic kick-net metabarcoding. Plos One. 15: e0242143. PMID 33206700 DOI: 10.1371/journal.pone.0242143  1
2020 McClenaghan B, Fahner N, Cote D, Chawarski J, McCarthy A, Rajabi H, Singer G, Hajibabaei M. Harnessing the power of eDNA metabarcoding for the detection of deep-sea fishes. Plos One. 15: e0236540. PMID 33147221 DOI: 10.1371/journal.pone.0236540  1
2020 McGee KM, Porter TM, Wright M, Hajibabaei M. Drivers of tropical soil invertebrate community composition and richness across tropical secondary forests using DNA metasystematics. Scientific Reports. 10: 18429. PMID 33116157 DOI: 10.1038/s41598-020-75452-4  1
2020 Eaton WD, McGee KM, Alderfer K, Jimenez AR, Hajibabaei M. Increase in abundance and decrease in richness of soil microbes following Hurricane Otto in three primary forest types in the Northern Zone of Costa Rica. Plos One. 15: e0231187. PMID 32730267 DOI: 10.1371/Journal.Pone.0231187  1
2020 Janzen D, Hallwachs W, Pereira G, Blanco R, Masis A, Chavarria MM, Chavarria F, Guadamuz A, Araya M, Smith MA, Valerio J, Guido H, Sanchez E, Bermudez S, Perez KH, ... ... Hajibabaei M, et al. Using DNA-barcoded Malaise trap samples to measure impact of a geothermal energy project on the biodiversity of a Costa Rican old-growth rain forest. Genome. PMID 32579871 DOI: 10.1139/Gen-2020-0002  1
2020 Bush A, Monk WA, Compson ZG, Peters DL, Porter TM, Shokralla S, Wright MTG, Hajibabaei M, Baird DJ. DNA metabarcoding reveals metacommunity dynamics in a threatened boreal wetland wilderness. Proceedings of the National Academy of Sciences of the United States of America. PMID 32217735 DOI: 10.1073/Pnas.1918741117  1
2020 McClenaghan B, Compson ZG, Hajibabaei M. Validating metabarcoding-based biodiversity assessments with multi-species occupancy models: A case study using coastal marine eDNA. Plos One. 15: e0224119. PMID 32191699 DOI: 10.1371/Journal.Pone.0224119  1
2020 Porter TM, Hajibabaei M. Putting COI Metabarcoding in Context: The Utility of Exact Sequence Variants (ESVs) in Biodiversity Analysis Frontiers in Ecology and Evolution. 8. DOI: 10.3389/Fevo.2020.00248  1
2020 Fais M, Duarte S, Vieira PE, Sousa R, Hajibabaei M, Canchaya CA, Costa FO. Small-scale spatial variation of meiofaunal communities in Lima estuary (NW Portugal) assessed through metabarcoding Estuarine Coastal and Shelf Science. 238: 106683. DOI: 10.1016/J.Ecss.2020.106683  1
2020 McGee KM, Eaton WD, Porter TM, Hajibabaei M. Differences in the soil microbiomes of Pentaclethra macroloba across tree size and in contrasting land use histories Plant and Soil. 452: 329-345. DOI: 10.1007/S11104-020-04553-W  1
2019 Hajibabaei M, Porter TM, Robinson CV, Baird DJ, Shokralla S, Wright MTG. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. Plos One. 14: e0225409. PMID 31830042 DOI: 10.1371/journal.pone.0225409  1
2019 Porter TM, Morris DM, Basiliko N, Hajibabaei M, Doucet D, Bowman S, Emilson EJS, Emilson CE, Chartrand D, Wainio-Keizer K, Séguin A, Venier L. Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators. Scientific Reports. 9: 18218. PMID 31796780 DOI: 10.1038/S41598-019-54532-0  1
2019 Elbrecht V, Braukmann TWA, Ivanova NV, Prosser SWJ, Hajibabaei M, Wright M, Zakharov EV, Hebert PDN, Steinke D. Validation of COI metabarcoding primers for terrestrial arthropods. Peerj. 7: e7745. PMID 31608170 DOI: 10.7717/Peerj.7745  1
2019 Hajibabaei M, Porter TM, Wright M, Rudar J. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. Plos One. 14: e0220953. PMID 31513585 DOI: 10.1371/journal.pone.0220953  1
2019 Singer GAC, Fahner NA, Barnes JG, McCarthy A, Hajibabaei M. Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater. Scientific Reports. 9: 5991. PMID 30979963 DOI: 10.1038/S41598-019-42455-9  1
2019 Bush A, Compson ZG, Monk W, Porter TM, Steeves R, Emilson EJ, Gagne N, Hajibabaei M, Roy M, Baird D. Studying Ecosystems With DNA Metabarcoding:Lessons From Biomonitoring of Aquatic Macroinvertebrates Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00434  1
2019 Compson ZG, Monk WA, Hayden B, Bush A, O'Malley Z, Hajibabaei M, Porter TM, Wright MTG, Baker CJO, Manir MSA, Curry RA, Baird DJ. Network-Based Biomonitoring: Exploring Freshwater Food Webs With Stable Isotope Analysis and DNA Metabarcoding Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00395  1
2019 McGee KM, Robinson CV, Hajibabaei M. Gaps in DNA-Based Biomonitoring Across the Globe Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00337  1
2019 Fais M, Duarte S, Vieira P, Sousa R, Hajibabaei M, Canchaya C, Costa F. Patterns of spatial and temporal variation in estuarine meiofaunal communities assessed through DNA metabarcoding: a case study in the Lima estuary (NW Portugal) Frontiers in Marine Science. 6. DOI: 10.3389/Conf.Fmars.2019.08.00060  1
2019 Hajibabaei M. From microbes to mammals: comprehensive analysis of biodiversity using DNA metabarcoding Frontiers in Marine Science. 6. DOI: 10.3389/Conf.Fmars.2019.08.00008  0.01
2019 Eaton WD, McGee KM, Donnelly R, Lemenze A, Karas O, Hajibabaei M. Differences in the soil microbial community and carbon‐use efficiency following development of Vochysia guatemalensis tree plantations in unproductive pastures in Costa Rica Restoration Ecology. 27: 1263-1273. DOI: 10.1111/Rec.12978  1
2019 McGee KM, Eaton WD, Porter TM, Shokralla S, Hajibabaei M. Soil microbiomes associated with two dominant Costa Rican tree species, and implications for remediation: A case study from a Costa Rican conservation area Applied Soil Ecology. 137: 139-153. DOI: 10.1016/J.Apsoil.2019.02.007  1
2019 Morningstar DE, Robinson CV, Shokralla S, Hajibabaei M. Interspecific competition in bats and diet shifts in response to white‐nose syndrome Ecosphere. 10. DOI: 10.1002/Ecs2.2916  1
2018 Farrell MJ, Govender D, Hajibabaei M, VAN DER Bank M, Davies TJ. Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach. Genome. PMID 30495980 DOI: 10.1139/Gen-2018-0064  0.01
2018 Staley ZR, Chuong JD, Hill SJ, Grabuski J, Shokralla S, Hajibabaei M, Edge TA. Fecal source tracking and eDNA profiling in an urban creek following an extreme rain event. Scientific Reports. 8: 14390. PMID 30258068 DOI: 10.1038/S41598-018-32680-Z  1
2018 Porter TM, Hajibabaei M. Over 2.5 million COI sequences in GenBank and growing. Plos One. 13: e0200177. PMID 30192752 DOI: 10.1371/journal.pone.0200177  1
2018 McGee KM, Eaton WD, Shokralla S, Hajibabaei M. Determinants of Soil Bacterial and Fungal Community Composition Toward Carbon-Use Efficiency Across Primary and Secondary Forests in a Costa Rican Conservation Area. Microbial Ecology. PMID 29858646 DOI: 10.1007/S00248-018-1206-0  1
2018 Bista I, Carvalho GR, Tang M, Walsh K, Zhou X, Hajibabaei M, Shokralla S, Seymour M, Bradley D, Liu S, Christmas M, Creer S. Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples. Molecular Ecology Resources. PMID 29667329 DOI: 10.1111/1755-0998.12888  1
2018 Majaneva M, Diserud OH, Eagle SHC, Boström E, Hajibabaei M, Ekrem T. Environmental DNA filtration techniques affect recovered biodiversity. Scientific Reports. 8: 4682. PMID 29549344 DOI: 10.1038/S41598-018-23052-8  1
2018 Emilson CE, Thompson DG, Venier LA, Porter TM, Swystun T, Chartrand D, Capell S, Hajibabaei M. Author Correction: DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient. Scientific Reports. 8: 4578. PMID 29531276 DOI: 10.1038/S41598-018-22978-3  1
2018 Porter TM, Hajibabaei M. Automated high throughput animal CO1 metabarcode classification. Scientific Reports. 8: 4226. PMID 29523803 DOI: 10.1038/s41598-018-22505-4  1
2018 Porter TM, Hajibabaei M. Scaling up: A guide to high throughput genomic approaches for biodiversity analysis. Molecular Ecology. PMID 29292539 DOI: 10.1111/mec.14478  1
2018 Curry CJ, Gibson JF, Shokralla S, Hajibabaei M, Baird DJ. Identifying North American freshwater invertebrates using DNA barcodes: are existing COI sequence libraries fit for purpose? Freshwater Science. 37: 178-189. DOI: 10.1086/696613  1
2017 Lobo J, Shokralla S, Costa MH, Hajibabaei M, Costa FO. DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities. Scientific Reports. 7: 15618. PMID 29142319 DOI: 10.1038/s41598-017-15823-6  1
2017 Emilson CE, Thompson DG, Venier LA, Porter TM, Swystun T, Chartrand D, Capell S, Hajibabaei M. DNA metabarcoding and morphological macroinvertebrate metrics reveal the same changes in boreal watersheds across an environmental gradient. Scientific Reports. 7: 12777. PMID 28986575 DOI: 10.1038/s41598-017-13157-x  1
2017 Eaton WD, Shokralla S, McGee KM, Hajibabaei M. Using metagenomics to show the efficacy of forest restoration in the New Jersey Pine Barrens. Genome. PMID 28732171 DOI: 10.1139/Gen-2015-0199  1
2017 Janzen DH, Burns JM, Cong Q, Hallwachs W, Dapkey T, Manjunath R, Hajibabaei M, Hebert PDN, Grishin NV. Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology. Proceedings of the National Academy of Sciences of the United States of America. PMID 28716927 DOI: 10.1073/Pnas.1621504114  1
2017 Bista I, Carvalho GR, Walsh K, Seymour M, Hajibabaei M, Lallias D, Christmas M, Creer S. Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity. Nature Communications. 8: 14087. PMID 28098255 DOI: 10.1038/Ncomms14087  1
2016 Mottawea W, Chiang CK, Mühlbauer M, Starr AE, Butcher J, Abujamel T, Deeke SA, Brandel A, Zhou H, Shokralla S, Hajibabaei M, Singleton R, Benchimol EI, Jobin C, Mack DR, et al. Altered intestinal microbiota-host mitochondria crosstalk in new onset Crohn's disease. Nature Communications. 7: 13419. PMID 27876802 DOI: 10.1038/Ncomms13419  1
2016 Hajibabaei M, Baird DJ, Fahner NA, Beiko R, Golding GB. A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27481782 DOI: 10.1098/Rstb.2015.0330  1
2016 Hebert PD, Hollingsworth PM, Hajibabaei M. From writing to reading the encyclopedia of life. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27481778 DOI: 10.1098/Rstb.2015.0321  1
2016 Fahner NA, Shokralla S, Baird DJ, Hajibabaei M. Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers. Plos One. 11: e0157505. PMID 27310720 DOI: 10.1371/Journal.Pone.0157505  1
2016 Porter TM, Shokralla S, Baird D, Golding GB, Hajibabaei M. Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas. Plos One. 11: e0142759. PMID 26731732 DOI: 10.1371/Journal.Pone.0142759  1
2016 Lobo J, Shokralla S, Costa MH, Hajibabaei M, Costa FO. Stepwise implementation of high-throughput sequencing metabarcoding to estuarine macrobenthic communities Frontiers in Marine Science. 3. DOI: 10.3389/Conf.Fmars.2016.05.00142  1
2016 Römbke J, Aira M, Backeljau T, Breugelmans K, Domínguez J, Funke E, Graf N, Hajibabaei M, Pérez-Losada M, Porto PG, Schmelz RM, Vierna J, Vizcaíno A, Pfenninger M. DNA barcoding of earthworms (Eisenia fetida/andrei complex) from 28 ecotoxicological test laboratories Applied Soil Ecology. 104: 3-11. DOI: 10.1016/J.Apsoil.2015.02.010  0.01
2015 Shafer AB, Wolf JB, Alves PC, Bergström L, Colling G, Dalén L, De Meester L, Ekblom R, Fior S, Hajibabaei M, Hoezel AR, Hoglund J, Jensen EL, Krützen M, Norman AJ, et al. Reply to Garner et al. Trends in Ecology & Evolution. PMID 26704456 DOI: 10.1016/J.Tree.2015.11.010  1
2015 Shokralla S, Hellberg RS, Handy SM, King I, Hajibabaei M. A DNA Mini-Barcoding System for Authentication of Processed Fish Products. Scientific Reports. 5: 15894. PMID 26516098 DOI: 10.1038/Srep15894  1
2015 Gibson JF, Shokralla S, Curry C, Baird DJ, Monk WA, King I, Hajibabaei M. Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing. Plos One. 10: e0138432. PMID 26488407 DOI: 10.1371/Journal.Pone.0138432  1
2015 McClenaghan B, Gibson JF, Shokralla S, Hajibabaei M. Discrimination of grasshopper (Orthoptera: Acrididae) diet and niche overlap using next-generation sequencing of gut contents. Ecology and Evolution. 5: 3046-55. PMID 26356479 DOI: 10.1002/Ece3.1585  1
2015 Mohseni P, Hahn NA, Frank RA, Hewitt LM, Hajibabaei M, Van Der Kraak G. Naphthenic Acid Mixtures from Oil Sands Process-Affected Water Enhance Differentiation of Mouse Embryonic Stem Cells and Affect Development of the Heart. Environmental Science & Technology. 49: 10165-72. PMID 26182351 DOI: 10.1021/Acs.Est.5B02267  1
2015 Shokralla S, Porter TM, Gibson JF, Dobosz R, Janzen DH, Hallwachs W, Golding GB, Hajibabaei M. Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform. Scientific Reports. 5: 9687. PMID 25884109 DOI: 10.1038/Srep09687  1
2015 Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, et al. Genomics and the challenging translation into conservation practice. Trends in Ecology & Evolution. 30: 78-87. PMID 25534246 DOI: 10.1016/J.Tree.2014.11.009  1
2014 Bertrand C, Janzen DH, Hallwachs W, Burns JM, Gibson JF, Shokralla S, Hajibabaei M. Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli (family Hesperiidae) comprises three morphologically cryptic species. Bmc Evolutionary Biology. 14: 153. PMID 25005355 DOI: 10.1186/1471-2148-14-153  1
2014 Vincent B, Hajibabaei M, Rougerie R. A striking new genus and species of tiger-moth (Lepidoptera: Erebidae, Arctiinae, Arctiini) from the Caribbean, with molecular and morphological analysis of its systematic placement. Zootaxa. 3760: 289-300. PMID 24870083 DOI: 10.11646/Zootaxa.3760.2.8  1
2014 Gibson J, Shokralla S, Porter TM, King I, van Konynenburg S, Janzen DH, Hallwachs W, Hajibabaei M. Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics. Proceedings of the National Academy of Sciences of the United States of America. 111: 8007-12. PMID 24808136 DOI: 10.1073/Pnas.1406468111  1
2014 Shokralla S, Gibson JF, Nikbakht H, Janzen DH, Hallwachs W, Hajibabaei M. Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens. Molecular Ecology Resources. 14: 892-901. PMID 24641208 DOI: 10.1111/1755-0998.12236  1
2014 Fernández-Triana JL, Whitfield JB, Rodriguez JJ, Smith MA, Janzen DH, Hallwachs WD, Hajibabaei M, Burns JM, Solis MA, Brown J, Cardinal S, Goulet H, Hebert PD. Review of Apanteles sensu stricto (Hymenoptera, Braconidae, Microgastrinae) from Area de Conservación Guanacaste, northwestern Costa Rica, with keys to all described species from Mesoamerica. Zookeys. 1-565. PMID 24624021 DOI: 10.3897/Zookeys.383.6418  1
2014 Brown JW, Janzen DH, Hallwachs W, Zahiri R, Hajibabaei M, Hebert PDN. Cracking complex taxonomy of Costa Rican moths: Anacrusis zeller (Lepidoptera: Tortricidae: Tortricinae) Journal of the Lepidopterists' Society. 68: 248-263. DOI: 10.18473/Lepi.V68I4.A3  1
2014 Porter TM, Gibson JF, Shokralla S, Baird DJ, Golding GB, Hajibabaei M. Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier Molecular Ecology Resources. 14: 929-942. DOI: 10.1111/1755-0998.12240  1
2013 Chacón IA, Janzen DH, Hallwachs W, J Bolling Sullivan, Hajibabaei M. Cryptic species within cryptic moths: new species of Dunama Schaus (Notodontidae, Nystaleinae) in Costa Rica. Zookeys. 11-45. PMID 23730176 DOI: 10.3897/Zookeys.264.4440  1
2013 Burns JM, Janzen DH, Hallwachs W, Hajibabaei M. DNA barcodes reveal yet another new species of Venada (Lepidoptera: Hesperiidae) in Northwestern Costa Rica Proceedings of the Entomological Society of Washington. 115: 37-47. DOI: 10.4289/0013-8797.115.1.37  1
2013 Chacón I, Janzen D, Hallwachs W, Sullivan J, Hajibabaei M. Figures 15-22 from: Zookeys. DOI: 10.3897/Zookeys.264.4440.Figures15-22  1
2013 Chacón I, Janzen D, Hallwachs W, Sullivan J, Hajibabaei M. Figures 1-6 from: Zookeys. DOI: 10.3897/Zookeys.264.4440.Figures1-6  1
2013 Chacón I, Janzen D, Hallwachs W, Sullivan J, Hajibabaei M. Figure 86 from Zookeys. DOI: 10.3897/Zookeys.264.4440.Figure86  1
2013 Grishin NV, Burns JM, Janzen DH, Hallwachs W, Hajibabaei M. Oxynetra: Facies and dna barcodes point to a new species from costa rica (Hesperiidae: Pyrginae: Pyrrhopygini) Journal of the Lepidopterists' Society. 67: 1-14. DOI: 10.18473/Lepi.V67I1.A1  1
2012 Hajibabaei M, Spall JL, Shokralla S, van Konynenburg S. Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol. Bmc Ecology. 12: 28. PMID 23259585 DOI: 10.1186/1472-6785-12-28  1
2012 Hajibabaei M. The golden age of DNA metasystematics. Trends in Genetics : Tig. 28: 535-7. PMID 22951138 DOI: 10.1016/J.Tig.2012.08.001  0.01
2012 Hajibabaei M, McKenna C. DNA mini-barcodes. Methods in Molecular Biology (Clifton, N.J.). 858: 339-53. PMID 22684963 DOI: 10.1007/978-1-61779-591-6_15  1
2012 Baird DJ, Hajibabaei M. Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing. Molecular Ecology. 21: 2039-44. PMID 22590728 DOI: 10.1111/J.1365-294X.2012.05519.X  1
2012 Smith MA, Bertrand C, Crosby K, Eveleigh ES, Fernandez-Triana J, Fisher BL, Gibbs J, Hajibabaei M, Hallwachs W, Hind K, Hrcek J, Huang DW, Janda M, Janzen DH, Li Y, et al. Wolbachia and DNA barcoding insects: patterns, potential, and problems. Plos One. 7: e36514. PMID 22567162 DOI: 10.1371/Journal.Pone.0036514  1
2012 Shokralla S, Spall JL, Gibson JF, Hajibabaei M. Next-generation sequencing technologies for environmental DNA research. Molecular Ecology. 21: 1794-805. PMID 22486820 DOI: 10.1111/J.1365-294X.2012.05538.X  1
2012 Taberlet P, Coissac E, Hajibabaei M, Rieseberg LH. Environmental DNA. Molecular Ecology. 21: 1789-93. PMID 22486819 DOI: 10.1111/J.1365-294X.2012.05542.X  1
2012 Janzen DH, Hallwachs W, Harvey DJ, Darrow K, Rougerie R, Hajibabaei M, Smith MA, Bertrand C, Gamboa IC, Espinoza B, Sullivan JB, Decaens T, Herbin D, Chavarria LF, Franco R, et al. What happens to the traditional taxonomy when a well-known tropical saturniid moth fauna is DNA barcoded? Invertebrate Systematics. 26: 478-505. DOI: 10.1071/Is12038  1
2012 Wallace LJ, Boilard SMAL, Eagle SHC, Spall JL, Shokralla S, Hajibabaei M. DNA barcodes for everyday life: Routine authentication of Natural Health Products Food Research International. 49: 446-452. DOI: 10.1016/J.Foodres.2012.07.048  1
2011 Janzen DH, Hallwachs W, Burns JM, Hajibabaei M, Bertrand C, Hebert PD. Reading the complex skipper butterfly fauna of one tropical place. Plos One. 6: e19874. PMID 21857895 DOI: 10.1371/Journal.Pone.0019874  1
2011 Shokralla S, Zhou X, Janzen DH, Hallwachs W, Landry JF, Jacobus LM, Hajibabaei M. Pyrosequencing for mini-barcoding of fresh and old museum specimens. Plos One. 6: e21252. PMID 21818256 DOI: 10.1371/Journal.Pone.0021252  1
2011 Wilson JJ, Rougerie R, Schonfeld J, Janzen DH, Hallwachs W, Hajibabaei M, Kitching IJ, Haxaire J, Hebert PD. When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths. Bmc Ecology. 11: 18. PMID 21806794 DOI: 10.1186/1472-6785-11-18  1
2011 Hajibabaei M, Shokralla S, Zhou X, Singer GA, Baird DJ. Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos. Plos One. 6: e17497. PMID 21533287 DOI: 10.1371/Journal.Pone.0017497  1
2011 Baird DJ, Baker CJ, Brua RB, Hajibabaei M, McNicol K, Pascoe TJ, de Zwart D. Toward a knowledge infrastructure for traits-based ecological risk assessment. Integrated Environmental Assessment and Management. 7: 209-15. PMID 21442733 DOI: 10.1002/Ieam.129  1
2011 Albu M, Nikbakht H, Hajibabaei M, Hickey DA. The DNA Barcode Linker. Molecular Ecology Resources. 11: 84-8. PMID 21429103 DOI: 10.1111/J.1755-0998.2010.02901.X  1
2011 Kesanakurti PR, Fazekas AJ, Burgess KS, Percy DM, Newmaster SG, Graham SW, Barrett SC, Hajibabaei M, Husband BC. Spatial patterns of plant diversity below-ground as revealed by DNA barcoding. Molecular Ecology. 20: 1289-302. PMID 21255172 DOI: 10.1111/J.1365-294X.2010.04989.X  1
2011 Baird DJ, Pascoe TJ, Zhou X, Hajibabaei M. Building freshwater macroinvertebrate DNA-barcode libraries from reference collection material: formalin preservation vs specimen age Journal of the North American Benthological Society. 30: 125-130. DOI: 10.1899/10-013.1  1
2011 Janzen DH, Hallwachs W, Burns JM, Hajibabaei M, Bertrand C, Hebert PDN. An example of indistinguishable adult ACG skippers (Figure 4) that are distinguishable by caterpillar facies, barcodes (Figure S1), or food plants. Plos One. DOI: 10.1371/Journal.Pone.0019874.G005  1
2011 Burgess KS, Fazekas AJ, Kesanakurti PR, Graham SW, Husband BC, Newmaster SG, Percy DM, Hajibabaei M, Barrett SCH. Discriminating plant species in a local temperate flora using the rbcL+matK DNA barcode Methods in Ecology and Evolution. 2: 333-340. DOI: 10.1111/J.2041-210X.2011.00092.X  1
2010 Shokralla S, Singer GA, Hajibabaei M. Direct PCR amplification and sequencing of specimens' DNA from preservative ethanol. Biotechniques. 48: 233-4. PMID 20359306 DOI: 10.2144/000113362  1
2010 Wilson JJ, Landry JF, Janzen DH, Hallwachs W, Nazari V, Hajibabaei M, Hebert PDN. Identity of the ailanthus webworm moth (Lepidoptera, Yponomeutidae), a complex of two species: Evidence from DNA barcoding, morphology and ecology Zookeys. 46: 41-60. DOI: 10.3897/Zookeys.46.406  1
2010 Burns JM, Janzen DH, Hallwachs W, Hajibabaei M, Hebert PDN. Genitalia, DNA barcodes, larval facies, and foodplants place the mimetic species neoxeniades molion in rhinthon (Hesperiidae: Hesperiinae) Journal of the Lepidopterists' Society. 64: 69-78. DOI: 10.18473/Lepi.V64I2.A2  1
2009 Fazekas AJ, Kesanakurti PR, Burgess KS, Percy DM, Graham SW, Barrett SC, Newmaster SG, Hajibabaei M, Husband BC. Are plant species inherently harder to discriminate than animal species using DNA barcoding markers? Molecular Ecology Resources. 9: 130-9. PMID 21564972 DOI: 10.1111/J.1755-0998.2009.02652.X  1
2009 Janzen DH, Hallwachs W, Blandin P, Burns JM, Cadiou JM, Chacon I, Dapkey T, Deans AR, Epstein ME, Espinoza B, Franclemont JG, Haber WA, Hajibabaei M, Hall JP, Hebert PD, et al. Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity. Molecular Ecology Resources. 9: 1-26. PMID 21564960 DOI: 10.1111/J.1755-0998.2009.02628.X  1
2009 Hajibabaei M, Singer GA. Googling DNA sequences on the World Wide Web. Bmc Bioinformatics. 10: S4. PMID 19900300 DOI: 10.1186/1471-2105-10-S14-S4  1
2009 Hollingsworth PM, Forrest LL, Spouge JL, Hajibabaei M, Ratnasingham S, van der Bank M, Chase MW, Cowan RS, Erickson DL, Fazekas AJ, Graham SW, James KE, Kim KJ, John Kress W, Schneider H, et al. A DNA barcode for land plants Proceedings of the National Academy of Sciences of the United States of America. 106: 12794-12797. PMID 19666622 DOI: 10.1073/Pnas.0905845106  1
2009 Singer GA, Hajibabaei M. web-based molecular biodiversity analysis. Bmc Bioinformatics. 10: S14. PMID 19534739 DOI: 10.1186/1471-2105-10-S6-S14  1
2008 Zimmermann J, Hajibabaei M, Blackburn DC, Hanken J, Cantin E, Posfai J, Evans TC. DNA damage in preserved specimens and tissue samples: a molecular assessment. Frontiers in Zoology. 5: 18. PMID 18947416 DOI: 10.1186/1742-9994-5-18  1
2008 Fazekas AJ, Burgess KS, Kesanakurti PR, Graham SW, Newmaster SG, Husband BC, Percy DM, Hajibabaei M, Barrett SC. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. Plos One. 3: e2802. PMID 18665273 DOI: 10.1371/Journal.Pone.0002802  1
2008 deWaard JR, Ivanova NV, Hajibabaei M, Hebert PD. Assembling DNA barcodes. Analytical protocols. Methods in Molecular Biology (Clifton, N.J.). 410: 275-93. PMID 18642605 DOI: 10.1007/978-1-59745-548-0_15  1
2008 Meusnier I, Singer GA, Landry JF, Hickey DA, Hebert PD, Hajibabaei M. A universal DNA mini-barcode for biodiversity analysis. Bmc Genomics. 9: 214. PMID 18474098 DOI: 10.1186/1471-2164-9-214  1
2008 Burns JM, Janzen DH, Hajibabaei M, Hallwachs W, Hebert PD. DNA barcodes and cryptic species of skipper butterflies in the genus Perichares in Area de Conservacion Guanacaste, Costa Rica. Proceedings of the National Academy of Sciences of the United States of America. 105: 6350-5. PMID 18436645 DOI: 10.1073/Pnas.0712181105  1
2007 Hajibabaei M, Singer GA, Clare EL, Hebert PD. Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring. Bmc Biology. 5: 24. PMID 17567898 DOI: 10.1186/1741-7007-5-24  1
2007 Hajibabaei M, Singer GA, Hebert PD, Hickey DA. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics : Tig. 23: 167-72. PMID 17316886 DOI: 10.1016/J.Tig.2007.02.001  1
2007 Costa FO, DeWaard JR, Boutillier J, Ratnasingham S, Dooh RT, Hajibabaei M, Hebert PDN. Biological identifications through DNA barcodes: The case of the Crustacea Canadian Journal of Fisheries and Aquatic Sciences. 64: 272-295. DOI: 10.1139/F07-008  1
2006 Hajibabaei M, Singer GA, Hickey DA. Benchmarking DNA barcodes: An assessment using available primate sequences. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 49: 851-4. PMID 16936793 DOI: 10.1139/G06-025  1
2006 Hajibabaei M, Xia J, Drouin G. Seed plant phylogeny: gnetophytes are derived conifers and a sister group to Pinaceae. Molecular Phylogenetics and Evolution. 40: 208-17. PMID 16621615 DOI: 10.1016/J.Ympev.2006.03.006  1
2006 Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PD. DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences of the United States of America. 103: 968-71. PMID 16418261 DOI: 10.1073/Pnas.0510466103  1
2006 Hajibabaei M, Smith MA, Janzen DH, Rodriguez JJ, Whitfield JB, Hebert PDN. A minimalist barcode can identify a specimen whose DNA is degraded Molecular Ecology Notes. 6: 959-964. DOI: 10.1111/J.1471-8286.2006.01470.X  1
2005 Hajibabaei M, deWaard JR, Ivanova NV, Ratnasingham S, Dooh RT, Kirk SL, Mackie PM, Hebert PD. Critical factors for assembling a high volume of DNA barcodes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 360: 1959-67. PMID 16214753 DOI: 10.1098/Rstb.2005.1727  1
2005 Janzen DH, Hajibabaei M, Burns JM, Hallwachs W, Remigio E, Hebert PD. Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 360: 1835-45. PMID 16214742 DOI: 10.1098/Rstb.2005.1715  1
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