Year |
Citation |
Score |
2020 |
Pegg CL, Phung TK, Caboche CH, Niamsuphap S, Bern M, Howell K, Schulz BL. Quantitative data independent acquisition glycoproteomics of sparkling wine. Molecular & Cellular Proteomics : McP. PMID 32938748 DOI: 10.1074/Mcp.Ra120.002181 |
0.346 |
|
2020 |
Roushan A, Wilson GM, Kletter D, Sen KI, Tang WH, Kil YJ, Carlson E, Bern M. Peak Filtering, Peak Annotation, and Wildcard Search for Glycoproteomics. Molecular & Cellular Proteomics : McP. PMID 32883802 DOI: 10.1074/Mcp.Ra120.002260 |
0.384 |
|
2019 |
van der Laarse SAM, van Gelder CAGH, Bern M, Akeroyd M, Olsthoorn MMA, Heck AJR. Targeting Proline in (Phospho)Proteomics. The Febs Journal. PMID 31863553 DOI: 10.1111/Febs.15190 |
0.369 |
|
2019 |
Kretizberg PA, Bern M, Shu Q, Yang F, Serang O. The alphabet projection of spectra. Journal of Proteome Research. PMID 31318211 DOI: 10.1021/Acs.Jproteome.9B00216 |
0.359 |
|
2019 |
Campuzano IDG, Robinson JH, Hui JO, Shi SD, Netirojjanakul C, Nshanian M, Lippens JL, Bagal D, Egea PF, Loo JA, Bern M. Native and Denaturing MS Protein Deconvolution for Biopharma: Monoclonal Antibodies and Antibody-Drug-Conjugates to Polydisperse Membrane Proteins and Beyond. Analytical Chemistry. PMID 31194911 DOI: 10.1021/Acs.Analchem.9B00062 |
0.379 |
|
2018 |
Yang S, Wu WW, Shen RF, Bern M, Cipollo J. Identification of Sialic Acid Linkages on Intact Glycopeptides via Differential Chemical Modification Using IntactGIG-HILIC. Journal of the American Society For Mass Spectrometry. PMID 29651731 DOI: 10.1007/S13361-018-1931-0 |
0.331 |
|
2018 |
Greer SM, Bern M, Becker C, Brodbelt JS. Extending Proteome Coverage by Combining MS/MS Methods and a Modified Bioinformatics Platform Adapted for Database Searching of Positive and Negative Polarity 193 nm Ultraviolet Photodissociation Mass Spectra. Journal of Proteome Research. PMID 29480007 DOI: 10.1021/Acs.Jproteome.7B00673 |
0.419 |
|
2018 |
Bern M, Caval T, Kil YJ, Tang W, Becker C, Carlson E, Kletter D, Sen KI, Galy N, Hagemans D, Franc V, Heck AJR. Parsimonious Charge Deconvolution for Native Mass Spectrometry. Journal of Proteome Research. PMID 29376659 DOI: 10.1021/Acs.Jproteome.7B00839 |
0.354 |
|
2017 |
Belov AM, Viner R, Santos MR, Horn DM, Bern M, Karger BL, Ivanov AR. Analysis of Proteins, Protein Complexes, and Organellar Proteomes Using Sheathless Capillary Zone Electrophoresis - Native Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 28875426 DOI: 10.1007/S13361-017-1781-1 |
0.36 |
|
2017 |
Schroeter ER, DeHart CJ, Cleland TP, Zheng W, Thomas PM, Kelleher NL, Bern M, Schweitzer MH. Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein. Journal of Proteome Research. PMID 28111950 DOI: 10.1021/Acs.Jproteome.6B00873 |
0.365 |
|
2017 |
Sen KI, Tang WH, Nayak S, Kil YJ, Bern M, Ozoglu B, Ueberheide B, Davis D, Becker C. Automated Antibody De Novo Sequencing and Its Utility in Biopharmaceutical Discovery. Journal of the American Society For Mass Spectrometry. PMID 28105549 DOI: 10.1007/S13361-016-1580-0 |
0.318 |
|
2016 |
Reatini BS, Ensink E, Liau B, Sinha JY, Powers TW, Partyka K, Bern M, Brand RE, Rudd PM, Kletter D, Drake RR, Haab BB. Characterizing Protein Glycosylation through On-Chip Glycan Modification and Probing. Analytical Chemistry. PMID 27809484 DOI: 10.1021/Acs.Analchem.6B02998 |
0.362 |
|
2016 |
Lee LY, Moh ES, Parker BL, Bern M, Packer NH, Thaysen-Andersen M. Towards Automated N-Glycopeptide Identification in Glycoproteomics. Journal of Proteome Research. PMID 27519006 DOI: 10.1021/Acs.Jproteome.6B00438 |
0.343 |
|
2016 |
Riley NM, Bern M, Westphall MS, Coon JJ. A full-featured search algorithm for negative electron transfer dissociation. Journal of Proteome Research. PMID 27402189 DOI: 10.1021/Acs.Jproteome.6B00319 |
0.396 |
|
2015 |
Cleland TP, Schroeter ER, Zamdborg L, Zheng W, Lee JE, Tran JC, Bern M, Duncan MB, Lebleu VS, Ahlf DR, Thomas PM, Kalluri R, Kelleher NL, Schweitzer MH. Mass Spectrometry and Antibody-Based Characterization of Blood Vessels from Brachylophosaurus canadensis. Journal of Proteome Research. PMID 26595531 DOI: 10.1021/Acs.Jproteome.5B00675 |
0.337 |
|
2015 |
Brito AE, Kletter D, Singhal M, Bern M. Benchmark study of automatic annotation of MALDI-TOF N-glycan profiles. Journal of Proteomics. 129: 71-7. PMID 26047718 DOI: 10.1016/J.Jprot.2015.05.028 |
0.351 |
|
2015 |
Kletter D, Curnutte B, Maupin KA, Bern M, Haab BB. Exploring the specificities of glycan-binding proteins using glycan array data and the GlycoSearch software. Methods in Molecular Biology (Clifton, N.J.). 1273: 203-14. PMID 25753713 DOI: 10.1007/978-1-4939-2343-4_15 |
0.309 |
|
2015 |
Tang H, Hsueh P, Kletter D, Bern M, Haab B. The detection and discovery of glycan motifs in biological samples using lectins and antibodies: new methods and opportunities. Advances in Cancer Research. 126: 167-202. PMID 25727148 DOI: 10.1016/Bs.Acr.2014.11.003 |
0.31 |
|
2015 |
Singh S, Pal K, Ensink E, Yadav J, Kletter D, Bern M, Mehta A, Melcher K, Haab BB. Abstract B31: Development of fucose based pancreatic cancer biomarkers using modified lectins Cancer Research. 75. DOI: 10.1158/1538-7445.Panca2014-B31 |
0.316 |
|
2014 |
Han X, Wang Y, Aslanian A, Bern M, Lavallée-Adam M, Yates JR. Sheathless capillary electrophoresis-tandem mass spectrometry for top-down characterization of Pyrococcus furiosus proteins on a proteome scale. Analytical Chemistry. 86: 11006-12. PMID 25346219 DOI: 10.1021/Ac503439N |
0.367 |
|
2013 |
Kletter D, Cao Z, Bern M, Haab B. Determining lectin specificity from glycan array data using motif segregation and GlycoSearch software. Current Protocols in Chemical Biology. 5: 157-69. PMID 23839995 DOI: 10.1002/9780470559277.Ch130028 |
0.313 |
|
2013 |
McClintock CS, Parks JM, Bern M, Ghattyvenkatakrishna PK, Hettich RL. Comparative informatics analysis to evaluate site-specific protein oxidation in multidimensional LC-MS/MS data. Journal of Proteome Research. 12: 3307-16. PMID 23827042 DOI: 10.1021/Pr400141P |
0.343 |
|
2013 |
Kletter D, Singh S, Bern M, Haab BB. Global comparisons of lectin-glycan interactions using a database of analyzed glycan array data. Molecular & Cellular Proteomics : McP. 12: 1026-35. PMID 23399549 DOI: 10.1074/Mcp.M112.026641 |
0.332 |
|
2013 |
Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M. Glycoproteomic analysis of the secretome of human endothelial cells. Molecular & Cellular Proteomics : McP. 12: 956-78. PMID 23345538 DOI: 10.1074/Mcp.M112.024018 |
0.34 |
|
2013 |
Bern M, Brito AE, Pang PC, Rekhi A, Dell A, Haslam SM. Polylactosaminoglycan glycomics: enhancing the detection of high-molecular-weight N-glycans in matrix-assisted laser desorption ionization time-of-flight profiles by matched filtering. Molecular & Cellular Proteomics : McP. 12: 996-1004. PMID 23325768 DOI: 10.1074/Mcp.O112.026377 |
0.361 |
|
2012 |
Bern M, Kil YJ, Becker C. Byonic: advanced peptide and protein identification software. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit13.20. PMID 23255153 DOI: 10.1002/0471250953.Bi1320S40 |
0.346 |
|
2012 |
Bhatia S, Kil YJ, Ueberheide B, Chait BT, Tayo L, Cruz L, Lu B, Yates JR, Bern M. Constrained de novo sequencing of conotoxins. Journal of Proteome Research. 11: 4191-200. PMID 22709442 DOI: 10.1021/Pr300312H |
0.592 |
|
2011 |
Kil YJ, Becker C, Sandoval W, Goldberg D, Bern M. Preview: a program for surveying shotgun proteomics tandem mass spectrometry data. Analytical Chemistry. 83: 5259-67. PMID 21619057 DOI: 10.1021/Ac200609A |
0.358 |
|
2011 |
Becker CH, Bern M. Recent developments in quantitative proteomics. Mutation Research. 722: 171-82. PMID 20620221 DOI: 10.1016/J.Mrgentox.2010.06.016 |
0.388 |
|
2011 |
Bhatia S, Kil YJ, Ueberheide B, Chait B, Tayo LL, Cruz LJ, Lu B, Yates JR, Bern M. Constrained de novo sequencing of peptides with application to conotoxins Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6577: 16-30. DOI: 10.1007/978-3-642-20036-6_2 |
0.552 |
|
2010 |
Chen X, Drogaris P, Bern M. Identification of tandem mass spectra of mixtures of isomeric peptides. Journal of Proteome Research. 9: 3270-9. PMID 20329787 DOI: 10.1021/Pr100205K |
0.374 |
|
2010 |
Bern M, Finney G, Hoopmann MR, Merrihew G, Toth MJ, MacCoss MJ. Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry. Analytical Chemistry. 82: 833-41. PMID 20039681 DOI: 10.1021/Ac901801B |
0.381 |
|
2009 |
Zhu Y, Guo T, Park JE, Li X, Meng W, Datta A, Bern M, Lim SK, Sze SK. Elucidating in vivo structural dynamics in integral membrane protein by hydroxyl radical footprinting. Molecular & Cellular Proteomics : McP. 8: 1999-2010. PMID 19473960 DOI: 10.1074/Mcp.M900081-Mcp200 |
0.316 |
|
2009 |
Goldberg D, Bern M, North SJ, Haslam SM, Dell A. Glycan family analysis for deducing N-glycan topology from single MS. Bioinformatics (Oxford, England). 25: 365-71. PMID 19073587 DOI: 10.1093/Bioinformatics/Btn636 |
0.336 |
|
2007 |
Goldberg D, Bern M, Parry S, Sutton-Smith M, Panico M, Morris HR, Dell A. Automated N-glycopeptide identification using a combination of single- and tandem-MS. Journal of Proteome Research. 6: 3995-4005. PMID 17727280 DOI: 10.1021/Pr070239F |
0.353 |
|
2007 |
Bern M, Cai Y, Goldberg D. Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry. Analytical Chemistry. 79: 1393-400. PMID 17243770 DOI: 10.1021/Ac0617013 |
0.411 |
|
2006 |
Bern M, Goldberg D, Lyashenko E. Data mining for proteins characteristic of clades. Nucleic Acids Research. 34: 4342-53. PMID 16936320 DOI: 10.1093/Nar/Gkl440 |
0.306 |
|
2006 |
Goldberg D, Bern M, Li B, Lebrilla CB. Automatic determination of O-glycan structure from fragmentation spectra. Journal of Proteome Research. 5: 1429-34. PMID 16739994 DOI: 10.1021/Pr060035J |
0.347 |
|
1995 |
Bern M, Michell S, Ruppert J. Linear-size nonobtuse triangulation of polygons Discrete & Computational Geometry. 14: 411-428. DOI: 10.1007/Bf02570715 |
0.311 |
|
1987 |
Bern M, Lawler E, Wong A. Linear-time computation of optimal subgraphs of decomposable graphs Journal of Algorithms. 8: 216-235. DOI: 10.1016/0196-6774(87)90039-3 |
0.606 |
|
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