Vincent Ossipow, PhD - Related publications

Biochemistry University of Geneva, Geneva, Switzerland 
Molecular biology, NECL, neuroscience
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Cao Y, Ma L. To Splice or to Transcribe: SKIP-Mediated Environmental Fitness and Development in Plants. Frontiers in Plant Science. 10: 1222. PMID 31632433 DOI: 10.3389/fpls.2019.01222   
2019 Hartenian E, Glaunsinger BA. Feedback to the central dogma: cytoplasmic mRNA decay and transcription are interdependent processes. Critical Reviews in Biochemistry and Molecular Biology. 1-14. PMID 31656086 DOI: 10.1080/10409238.2019.1679083   
2019 Zhang X, Wang W, Zhu W, Dong J, Cheng Y, Yin Z, Shen F. Mechanisms and Functions of Long Non-Coding RNAs at Multiple Regulatory Levels. International Journal of Molecular Sciences. 20. PMID 31717266 DOI: 10.3390/ijms20225573   
2019 Barrows JK, Long DT. Cell-free transcription in Xenopus egg extract. The Journal of Biological Chemistry. PMID 31732562 DOI: 10.1074/jbc.RA119.011350   
2019 Gao C, Wang Y. mRNA Metabolism in Cardiac Development and Disease - Life After Transcription. Physiological Reviews. PMID 31751167 DOI: 10.1152/physrev.00007.2019   
2019 Cassidy KC, Lahr RM, Kaminsky JC, Mack S, Fonseca BD, Das SR, Berman AJ, Durrant JD. Capturing the Mechanism Underlying TOP mRNA Binding to LARP1. Structure (London, England : 1993). PMID 31676287 DOI: 10.1016/j.str.2019.10.006   
2019 Li S, Wang Y, Zhao Y, Zhao X, Chen X, Gong Z. Global co-transcriptional splicing in Arabidopsis and the correlation with splicing regulation in mature RNAs. Molecular Plant. PMID 31759129 DOI: 10.1016/j.molp.2019.11.003   
2019 Hasegawa Y, Struhl K. Promoter-specific dynamics of TATA-binding protein association with the human genome. Genome Research. PMID 31732535 DOI: 10.1101/gr.254466.119   
2019 Peng Y, Wang Z, Wang Z, Yu F, Li J, Wong J. SUMOylation down-regulates rDNA transcription by repressing expression of upstream-binding factor and proto-oncogene c-Myc. The Journal of Biological Chemistry. PMID 31694914 DOI: 10.1074/jbc.RA119.010624   
2019 Lv X, Wang W, Han Z, Liu S, Yang W, Li M, Wang L, Song L. The Dicer from oyster Crassostrea gigas functions as an intracellular recognition molecule and effector in anti-viral immunity. Fish & Shellfish Immunology. PMID 31678182 DOI: 10.1016/j.fsi.2019.10.067   
2019 Portz B, Shorter J. Switching Condensates: The CTD Code Goes Liquid. Trends in Biochemical Sciences. PMID 31734037 DOI: 10.1016/j.tibs.2019.10.009   
2019 Hsu PJ, Shi H, Zhu AC, Lu Z, Miller N, Edens BM, Ma YC, He C. The RNA-binding protein FMRP facilitates the nuclear export of -methyladenosine-containing mRNAs. The Journal of Biological Chemistry. PMID 31753916 DOI: 10.1074/jbc.AC119.010078   
2019 Cai H, Zhu C, Chen Z, Maimaiti R, Sun M, McCormick RJ, Lan X, Chen H, Guo W. Angiotensin II Influences Pre-mRNA Splicing Regulation by Enhancing Transcription Through Activation of the MAPK/ELK1 Signaling Pathway. International Journal of Molecular Sciences. 20. PMID 31614708 DOI: 10.3390/ijms20205059   
2019 Zhu D, Mao F, Tian Y, Lin X, Gu L, Gu H, Qu LJ, Wu Y, Wu Z. The features and regulation of co-transcriptional splicing in Arabidopsis. Molecular Plant. PMID 31760161 DOI: 10.1016/j.molp.2019.11.004   
2019 Watkins KP, Williams-Carrier R, Chotewutmontri P, Friso G, Teubner M, Belcher S, Ruwe H, Schmitz-Linneweber C, van Wijk KJ, Barkan A. Exploring the proteome associated with the mRNA encoding the D1 reaction center protein of Photosystem II in plant chloroplasts. The Plant Journal : For Cell and Molecular Biology. PMID 31793101 DOI: 10.1111/tpj.14629   
2019 Wang D, Zhang S, Liu B. TAF5L functions as transcriptional coactivator of MITF involved in the immune response of the clam Meretrix petechialis. Fish & Shellfish Immunology. PMID 31743760 DOI: 10.1016/j.fsi.2019.11.039   
2019 Sharma M, Sharma S, Alawada A. Understanding the binding specificities of mRNA targets by the mammalian Quaking protein. Nucleic Acids Research. PMID 31602485 DOI: 10.1093/nar/gkz877   
2019 Tabassum N, Eschen-Lippold L, Athmer B, Baruah Martina Brode M, David Maldonado-Bonilla L, Hoehenwarter W, Hause G, Scheel D, Lee J. Phosphorylation-dependent control of an RNA granule-localized protein that fine-tunes defence gene expression at a post-transcriptional level. The Plant Journal : For Cell and Molecular Biology. PMID 31628867 DOI: 10.1111/tpj.14573   
2019 Wang L, Chen M, Zhu F, Fan T, Zhang J, Lo C. Alternative splicing is a Sorghum bicolor defense response to fungal infection. Planta. 251: 14. PMID 31776670 DOI: 10.1007/s00425-019-03309-w   
2019 Bouillier C, Cosentino G, Léger T, Rincheval V, Richard CA, Desquesnes A, Sitterlin D, Blouquit-Laye S, Eléouët JF, Gault E, Rameix-Welti MA. The Interactome analysis of the Respiratory Syncytial Virus protein M2-1 suggests a new role in viral mRNA metabolism post-transcription. Scientific Reports. 9: 15258. PMID 31649314 DOI: 10.1038/s41598-019-51746-0   
2019 Traubenik S, Reynoso MA, Hobecker KV, Lancia M, Hummel M, Rosen B, Town C, Bailey-Serres J, Blanco FA, Zanetti ME. Reprogramming of root cells during nitrogen-fixing symbiosis involves dynamic polysome association of coding and non-coding RNAs. The Plant Cell. PMID 31748328 DOI: 10.1105/tpc.19.00647   
2019 Eichel CA, Rios-Pérez EB, Liu F, Jameson MB, Jones DK, Knickelbine JJ, Robertson GA. A microtranslatome coordinately regulates sodium and potassium currents in the human heart. Elife. 8. PMID 31670657 DOI: 10.7554/eLife.52654   
2019 Levitsky V, Zemlyanskaya E, Oshchepkov D, Podkolodnaya O, Ignatieva E, Grosse I, Mironova V, Merkulova T. A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package. Nucleic Acids Research. 47: e139. PMID 31750523 DOI: 10.1093/nar/gkz800   
2019 Lau E, Han Y, Williams DR, Thomas CT, Shrestha R, Wu JC, Lam MPY. Splice-Junction-Based Mapping of Alternative Isoforms in the Human Proteome. Cell Reports. 29: 3751-3765.e5. PMID 31825849 DOI: 10.1016/j.celrep.2019.11.026   
2019 Chen SL, Rooney TJ, Hu AR, Beard HS, Garrett WM, Mangalath LM, Powers JJ, Cooper B, Zhang XN. Quantitative Proteomics Reveals a Role for SERINE/ARGININE-Rich 45 in Regulating RNA Metabolism and Modulating Transcriptional Suppression the ASAP Complex in . Frontiers in Plant Science. 10: 1116. PMID 31608083 DOI: 10.3389/fpls.2019.01116   
2019 Berges N, Nawaz MS, Børresdatter Dahl T, Hagen L, Bjørås M, Laerdahl JK, Alseth I. Complex alternative splicing of human Endonuclease V mRNA, but evidence for only a single protein isoform. Plos One. 14: e0225081. PMID 31703097 DOI: 10.1371/journal.pone.0225081   
2019 Belloni E, Di Matteo A, Pradella D, Vacca M, Wyatt CDR, Alfieri R, Maffia A, Sabbioneda S, Ghigna C. Gene Expression Profiles Controlled by the Alternative Splicing Factor Nova2 in Endothelial Cells. Cells. 8. PMID 31771184 DOI: 10.3390/cells8121498   
2019 Sechi S, Frappaolo A, Karimpour-Ghahnavieh A, Gottardo M, Burla R, Di Francesco L, Szafer-Glusman E, Schininà E, Fuller MT, Saggio I, Riparbelli MG, Callaini G, Giansanti MG. doublefault protein coordinates multiple events during male meiosis by controlling mRNA translation. Development (Cambridge, England). PMID 31645358 DOI: 10.1242/dev.183053   
2019 Mussbacher M, Stessel H, Pirker T, Gorren ACF, Mayer B, Schrammel A. S-nitrosoglutathione inhibits adipogenesis in 3T3-L1 preadipocytes by S-nitrosation of CCAAT/enhancer-binding protein β. Scientific Reports. 9: 15403. PMID 31659183 DOI: 10.1038/s41598-019-51579-x   
2019 Mao Y, Dong L, Liu XM, Guo J, Ma H, Shen B, Qian SB. mA in mRNA coding regions promotes translation via the RNA helicase-containing YTHDC2. Nature Communications. 10: 5332. PMID 31767846 DOI: 10.1038/s41467-019-13317-9   
2019 Kumar N, Kulkarni RV. Constraining the complexity of promoter dynamics using fluctuations in gene expression. Physical Biology. PMID 31618721 DOI: 10.1088/1478-3975/ab4e57   
2019 Zhao JC, Chai Z, Guo SM, Liu ZH. [Analysis of SOX2 gene promoter activity in porcine early embryonic development]. Yi Chuan = Hereditas. 41: 950-961. PMID 31624057 DOI: 10.16288/j.yczz.19-045   
2019 Parenteau J, Abou Elela S. Introns: Good Day Junk Is Bad Day Treasure. Trends in Genetics : Tig. 35: 923-934. PMID 31668856 DOI: 10.1016/j.tig.2019.09.010   
2019 Li C, Shi L, Wang Y, Li W, Chen B, Zhu L, Fu Y. Arabidopsis ECAP is a New Adaptor Protein that Connects JAZ Repressors with TPR2 Co-repressor to Suppress Jasmonate-Responsive Anthocyanin Accumulation. Molecular Plant. PMID 31706031 DOI: 10.1016/j.molp.2019.10.014   
2019 Ule J, Blencowe BJ. Alternative Splicing Regulatory Networks: Functions, Mechanisms, and Evolution. Molecular Cell. 76: 329-345. PMID 31626751 DOI: 10.1016/j.molcel.2019.09.017   
2019 Poganik JR, Long MJC, Disare MT, Liu X, Chang SH, Hla T, Aye Y. Post-transcriptional regulation of Nrf2-mRNA by the mRNA-binding proteins HuR and AUF1. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201901930R. PMID 31665914 DOI: 10.1096/fj.201901930R   
2019 Chen G, Feng Y, Sun Z, Gao Y, Wu C, Zhang H, Cao J, Chen Z, Cao J, Zhu Y, Zhang S. mRNA and lncRNA Expression Profiling of Radiation-Induced Gastric Injury Reveals Potential Radiation-Responsive Transcription Factors. Dose-Response : a Publication of International Hormesis Society. 17: 1559325819886766. PMID 31762715 DOI: 10.1177/1559325819886766   
2019 A P S, Mohan N, Francis N, Laishram RS, Anderson RA. Star-PAP controlled alternative polyadenylation coupled poly(A) tail length regulates protein expression in hypertrophic heart. Nucleic Acids Research. PMID 31598705 DOI: 10.1093/nar/gkz875   
2019 Liu B, Marucha KK, Clayton C. The zinc finger proteins ZC3H20 and ZC3H21 stabilise mRNAs encoding membrane proteins and mitochondrial proteins in insect-form Trypanosoma brucei. Molecular Microbiology. PMID 31743541 DOI: 10.1111/mmi.14429   
2019 Aliouat A, Hatin I, Bertin P, François P, Stierlé V, Namy O, Salhi S, Jean-Jean O. Divergent effects of translation termination factor eRF3A and nonsense-mediated mRNA decay factor UPF1 on the expression of uORF carrying mRNAs and ribosome protein genes. Rna Biology. 1-13. PMID 31619139 DOI: 10.1080/15476286.2019.1674595   
2019 Dash S, Brastrom LK, Patel SD, Scott CA, Slusarski DC, Lachke SA. The master transcription factor SOX2, mutated in anophthalmia/microphthalmia, is post-transcriptionally regulated by the conserved RNA-binding protein RBM24 in vertebrate eye development. Human Molecular Genetics. PMID 31814023 DOI: 10.1093/hmg/ddz278   
2019 Borišek J, Saltalamacchia A, Gallì A, Palermo G, Molteni E, Malcovati L, Magistrato A. Disclosing the Impact of Carcinogenic SF3b Mutations on Pre-mRNA Recognition Via All-Atom Simulations. Biomolecules. 9. PMID 31640290 DOI: 10.3390/biom9100633   
2019 Bianco C, Thompson L, Mohr I. Repression of eEF2K transcription by NF-κB tunes translation elongation to inflammation and dsDNA-sensing. Proceedings of the National Academy of Sciences of the United States of America. PMID 31636182 DOI: 10.1073/pnas.1909143116   
2019 Lee M, Joo M, Sim M, Sim SH, Kim HL, Lee J, Ryu M, Yeom JH, Hahn Y, Ha NC, Cho JC, Lee K. The coordinated action of RNase III and RNase G controls enolase expression in response to oxygen availability in Escherichia coli. Scientific Reports. 9: 17257. PMID 31754158 DOI: 10.1038/s41598-019-53883-y   
2019 Torres-Fernández LA, Jux B, Bille M, Port Y, Schneider K, Geyer M, Mayer G, Kolanus W. The mRNA repressor TRIM71 cooperates with Nonsense-Mediated Decay factors to destabilize the mRNA of CDKN1A/p21. Nucleic Acids Research. PMID 31732746 DOI: 10.1093/nar/gkz1057   
2019 Lopez Soto EJ, Gandal MJ, Gonatopoulos-Pournatzis T, Heller EA, Luo D, Zheng S. Mechanisms of Neuronal Alternative Splicing and Strategies for Therapeutic Interventions. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 39: 8193-8199. PMID 31619487 DOI: 10.1523/JNEUROSCI.1149-19.2019   
2019 Wei Y, Resetca D, Li Z, Johansson-Åkhe I, Ahlner A, Helander S, Wallenhammar A, Morad V, Raught B, Wallner B, Kokubo T, Tong Y, Penn LZ, Sunnerhagen M. Multiple direct interactions of TBP with the MYC oncoprotein. Nature Structural & Molecular Biology. PMID 31686052 DOI: 10.1038/s41594-019-0321-z   
2019 Wan R, Bai R, Zhan X, Shi Y. How Is Precursor Messenger RNA Spliced by the Spliceosome? Annual Review of Biochemistry. PMID 31815536 DOI: 10.1146/annurev-biochem-013118-111024   
2019 Katsafanas GC, Moss B. Specific Anchoring and Local Translation of Poxviral ATI mRNA at Cytoplasmic Inclusion Bodies. Journal of Virology. PMID 31776279 DOI: 10.1128/JVI.01671-19   
2019 Morinaga A, Ito J, Niimi T, Maturana AD. RBM20 Regulates CaV1.2 Surface Expression by Promoting Exon 9* Inclusion of in Neonatal Rat Cardiomyocytes. International Journal of Molecular Sciences. 20. PMID 31717392 DOI: 10.3390/ijms20225591