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Junmin Peng - Publications

Affiliations: 
Biological and Biomedical Sciences Emory University, Atlanta, GA 
Area:
Neuroscience Biology, Pharmacology, Pathology, Molecular Biology
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Year Citation  Score
2024 Shrestha HK, Lee D, Wu Z, Wang Z, Fu Y, Wang X, Serrano GE, Beach TG, Peng J. Profiling Protein-Protein Interactions in the Human Brain by Refined Cofractionation Mass Spectrometry. Journal of Proteome Research. PMID 38507900 DOI: 10.1021/acs.jproteome.3c00685  0.312
2023 Dey KK, Yarbro JM, Liu D, Han X, Wang Z, Jiao Y, Wu Z, Yang S, Lee D, Dasgupta A, Yuan ZF, Wang X, Zhu L, Peng J. Identifying Sex-Specific Serum Patterns of Alzheimer's Mice through Deep TMT Profiling and a Concentration-Dependent Concatenation Strategy. Journal of Proteome Research. PMID 37910662 DOI: 10.1021/acs.jproteome.3c00496  0.315
2023 Zaman M, Fu Y, Chen PC, Sun H, Yang S, Wu Z, Wang Z, Poudel S, Serrano GE, Beach TG, Li L, Wang X, Peng J. Dissecting detergent-insoluble proteome in Alzheimer's disease by TMTc-corrected quantitative mass spectrometry. Molecular & Cellular Proteomics : McP. 100608. PMID 37356496 DOI: 10.1016/j.mcpro.2023.100608  0.343
2022 Johnson ECB, Carter EK, Dammer EB, Duong DM, Gerasimov ES, Liu Y, Liu J, Betarbet R, Ping L, Yin L, Serrano GE, Beach TG, Peng J, De Jager PL, Haroutunian V, et al. Large-scale deep multi-layer analysis of Alzheimer's disease brain reveals strong proteomic disease-related changes not observed at the RNA level. Nature Neuroscience. 25: 213-225. PMID 35115731 DOI: 10.1038/s41593-021-00999-y  0.66
2021 Yu K, Niu M, Wang H, Li Y, Wu Z, Zhang B, Haroutunian V, Peng J. Global Profiling of Lysine Accessibility to Evaluate Protein Structure Changes in Alzheimer's Disease. Journal of the American Society For Mass Spectrometry. PMID 33683887 DOI: 10.1021/jasms.0c00450  0.346
2020 Wang Z, Kavdia K, Dey KK, Pagala VR, Kodali K, Liu D, Lee DG, Sun H, Chepyala SR, Cho JH, Niu M, High AA, Peng J. High-throughput and Deep-proteome Profiling by 16-plex Tandem Mass Tag Labeling Coupled with Two-dimensional Chromatography and Mass Spectrometry. Journal of Visualized Experiments : Jove. PMID 32894271 DOI: 10.3791/61684  0.372
2020 Wang H, Dey KK, Chen PC, Li Y, Niu M, Cho JH, Wang X, Bai B, Jiao Y, Chepyala SR, Haroutunian V, Zhang B, Beach TG, Peng J. Integrated analysis of ultra-deep proteomes in cortex, cerebrospinal fluid and serum reveals a mitochondrial signature in Alzheimer's disease. Molecular Neurodegeneration. 15: 43. PMID 32711556 DOI: 10.1186/S13024-020-00384-6  0.338
2020 Wang X, Cho JH, Poudel S, Li Y, Jones DR, Shaw TI, Tan H, Xie B, Peng J. JUMPm: A Tool for Large-Scale Identification of Metabolites in Untargeted Metabolomics. Metabolites. 10. PMID 32408578 DOI: 10.3390/Metabo10050190  0.309
2020 Ma X, Claus LAN, Leslie ME, Tao K, Wu Z, Liu J, Yu X, Li B, Zhou J, Savatin DV, Peng J, Tyler BM, Heese A, Russinova E, He P, et al. Ligand-induced monoubiquitination of BIK1 regulates plant immunity. Nature. 581: 199-203. PMID 32404997 DOI: 10.1038/S41586-020-2210-3  0.304
2020 Wang Z, Yu K, Tan H, Wu Z, Cho JH, Han X, Sun H, Beach TG, Peng J. 27-plex Tandem Mass Tag Mass Spectrometry for Profiling Brain Proteome in Alzheimer's Disease. Analytical Chemistry. PMID 32343560 DOI: 10.1021/Acs.Analchem.0C00655  0.399
2020 Bai B, Wang X, Li Y, Chen PC, Yu K, Dey KK, Yarbro JM, Han X, Lutz BM, Rao S, Jiao Y, Sifford JM, Han J, Wang M, Tan H, ... ... Peng J, et al. Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression. Neuron. PMID 31926610 DOI: 10.1016/J.Neuron.2019.12.015  0.413
2019 Blennow K, Chen C, Cicognola C, Wildsmith KR, Manser PT, Bohorquez SMS, Zhang Z, Xie B, Peng J, Hansson O, Kvartsberg H, Portelius E, Zetterberg H, Lashley T, Brinkmalm G, et al. Cerebrospinal fluid tau fragment correlates with tau PET: a candidate biomarker for tangle pathology. Brain : a Journal of Neurology. PMID 31834365 DOI: 10.1093/Brain/Awz346  0.303
2019 Shi H, Chapman NM, Wen J, Guy C, Long L, Dhungana Y, Rankin S, Pelletier S, Vogel P, Wang H, Peng J, Guan KL, Chi H. Amino Acids License Kinase mTORC1 Activity and Treg Cell Function via Small G Proteins Rag and Rheb. Immunity. PMID 31668641 DOI: 10.1016/J.Immuni.2019.10.001  0.314
2019 Tian X, Xie B, Zou Z, Jiao Y, Lin LE, Chen CL, Hsu CC, Peng J, Yang Z. Multimodal Imaging of Amyloid Plaques: Fusion of the Single-probe Mass Spectrometry Image and Fluorescence Microscopy Image. Analytical Chemistry. PMID 31536324 DOI: 10.1021/Acs.Analchem.9B02792  0.307
2019 Wang H, Diaz AK, Shaw TI, Li Y, Niu M, Cho JH, Paugh BS, Zhang Y, Sifford J, Bai B, Wu Z, Tan H, Zhou S, Hover LD, Tillman HS, ... ... Peng J, et al. Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genes. Nature Communications. 10: 3718. PMID 31420543 DOI: 10.1038/S41467-019-11661-4  0.359
2019 Hunt LC, Stover J, Haugen B, Shaw TI, Li Y, Pagala VR, Finkelstein D, Barton ER, Fan Y, Labelle M, Peng J, Demontis F. A Key Role for the Ubiquitin Ligase UBR4 in Myofiber Hypertrophy in Drosophila and Mice. Cell Reports. 28: 1268-1281.e6. PMID 31365869 DOI: 10.1016/J.Celrep.2019.06.094  0.374
2019 Ravichandran R, Kodali K, Peng J, Potts PR. Regulation of MAGE-A3/6 by the CRL4-DCAF12 ubiquitin ligase and nutrient availability. Embo Reports. 20: e47352. PMID 31267705 DOI: 10.15252/Embr.201847352  0.32
2019 Dey KK, Wang H, Niu M, Bai B, Wang X, Li Y, Cho JH, Tan H, Mishra A, High AA, Chen PC, Wu Z, Beach TG, Peng J. Deep undepleted human serum proteome profiling toward biomarker discovery for Alzheimer's disease. Clinical Proteomics. 16: 16. PMID 31019427 DOI: 10.1186/S12014-019-9237-1  0.339
2019 Wang B, Maxwell BA, Joo JH, Gwon Y, Messing J, Mishra A, Shaw TI, Ward AL, Quan H, Sakurada SM, Pruett-Miller SM, Bertorini T, Vogel P, Kim HJ, Peng J, et al. ULK1 and ULK2 Regulate Stress Granule Disassembly Through Phosphorylation and Activation of VCP/p97. Molecular Cell. PMID 30979586 DOI: 10.1016/J.Molcel.2019.03.027  0.311
2019 Chen D, Xia S, Wang M, Lin R, Li Y, Mao H, Aguiar M, Famulare CA, Shih AH, Brennan CW, Gao X, Pan Y, Liu S, Fan J, Jin L, ... ... Peng J, et al. Mutant and wild-type isocitrate dehydrogenase 1 share enhancing mechanisms involving distinct tyrosine kinase cascades in cancer. Cancer Discovery. PMID 30862724 DOI: 10.1158/2159-8290.Cd-18-1040  0.302
2019 Yang X, Xu B, Mulvey B, Evans M, Jordan S, Wang YD, Pagala V, Peng J, Fan Y, Patel A, Peng JC. Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1. Nature Neuroscience. PMID 30718900 DOI: 10.1038/S41593-018-0328-5  0.305
2018 Han KJ, Wu Z, Pearson CG, Peng J, Song K, Liu CW. Deubiquitinase USP9X Maintains Centriolar Satellite Integrity by Stabilizing Pericentriolar Material 1 Protein. Journal of Cell Science. PMID 30584065 DOI: 10.1242/Jcs.221663  0.388
2018 Lutz BM, Peng J. Deep Profiling of the Aggregated Proteome in Alzheimer's Disease: From Pathology to Disease Mechanisms. Proteomes. 6. PMID 30424485 DOI: 10.3390/Proteomes6040046  0.357
2018 Stewart E, McEvoy J, Wang H, Chen X, Honnell V, Ocarz M, Gordon B, Dapper J, Blankenship K, Yang Y, Li Y, Shaw TI, Cho JH, Wang X, Xu B, ... ... Peng J, et al. Identification of Therapeutic Targets in Rhabdomyosarcoma through Integrated Genomic, Epigenomic, and Proteomic Analyses. Cancer Cell. PMID 30146332 DOI: 10.1016/J.Ccell.2018.07.012  0.313
2018 Li J, Zhang Y, Da Silva Sil Dos Santos B, Wang F, Ma Y, Perez C, Yang Y, Peng J, Cohen SM, Chou TF, Hilton ST, Deshaies RJ. Epidithiodiketopiperazines Inhibit Protein Degradation by Targeting Proteasome Deubiquitinase Rpn11. Cell Chemical Biology. PMID 30146242 DOI: 10.1016/J.Chembiol.2018.07.012  0.405
2018 Wang ZH, Wu W, Kang SS, Liu X, Wu Z, Peng J, Yu SP, Manfredsson FP, Sandoval IM, Liu X, Wang JZ, Ye K. BDNF inhibits neurodegenerative disease-associated asparaginyl endopeptidase activity via phosphorylation by AKT. Jci Insight. 3. PMID 30135302 DOI: 10.1172/Jci.Insight.99007  0.338
2018 Shen J, Pagala VR, Breuer AM, Peng J, Ma B, Wang X. Spectral Library Search Improves Assignment of TMT Labeled MS/MS Spectra. Journal of Proteome Research. PMID 30096983 DOI: 10.1021/Acs.Jproteome.8B00594  0.318
2018 Xie B, Wang Y, Jones DR, Dey KK, Wang X, Li Y, Cho JH, Shaw TI, Tan H, Peng J. Isotope Labeling-assisted Evaluation of Hydrophilic and Hydrophobic Liquid Chromatograph-Mass Spectrometry for Metabolomics Profiling. Analytical Chemistry. PMID 29883117 DOI: 10.1021/Acs.Analchem.8B01591  0.3
2018 Du X, Wen J, Wang Y, Karmaus PWF, Khatamian A, Tan H, Li Y, Guy C, Nguyen TM, Dhungana Y, Neale G, Peng J, Yu J, Chi H. Hippo/Mst signalling couples metabolic state and immune function of CD8α dendritic cells. Nature. PMID 29849151 DOI: 10.1038/S41586-018-0177-0  0.305
2018 Kozina E, Sadasivan S, Jiao Y, Dou Y, Ma Z, Tan H, Kodali K, Shaw T, Peng J, Smeyne RJ. Mutant LRRK2 mediates peripheral and central immune responses leading to neurodegeneration in vivo. Brain : a Journal of Neurology. 141: 1753-1769. PMID 29800472 DOI: 10.1093/Brain/Awy077  0.319
2018 Wang X, Jones DR, Shaw TI, Cho JH, Wang Y, Tan H, Xie B, Zhou S, Li Y, Peng J. Target-decoy Based False Discovery Rate Estimation for Large-scale Metabolite Identification. Journal of Proteome Research. PMID 29790753 DOI: 10.1021/Acs.Jproteome.8B00019  0.309
2017 High AA, Tan H, Pagala VR, Niu M, Cho JH, Wang X, Bai B, Peng J. Deep Proteome Profiling by Isobaric Labeling, Extensive Liquid Chromatography, Mass Spectrometry, and Software-assisted Quantification. Journal of Visualized Experiments : Jove. PMID 29286450 DOI: 10.3791/56474  0.349
2017 Scott DC, Hammill JT, Min J, Rhee DY, Connelly M, Sviderskiy VO, Bhasin D, Chen Y, Ong SS, Chai SC, Goktug AN, Huang G, Monda JK, Low J, Kim HS, ... ... Peng J, et al. Blocking an N-terminal acetylation-dependent protein interaction inhibits an E3 ligase. Nature Chemical Biology. PMID 28581483 DOI: 10.1038/Nchembio.2386  0.38
2017 Bai B, Tan H, Peng J. Quantitative Phosphoproteomic Analysis of Brain Tissues. Methods in Molecular Biology (Clifton, N.J.). 1598: 199-211. PMID 28508362 DOI: 10.1007/978-1-4939-6952-4_8  0.408
2017 Tan H, Yang K, Li Y, Shaw TI, Wang Y, Blanco DB, Wang X, Cho JH, Wang H, Rankin S, Guy C, Peng J, Chi H. Integrative Proteomics and Phosphoproteomics Profiling Reveals Dynamic Signaling Networks and Bioenergetics Pathways Underlying T Cell Activation. Immunity. PMID 28285833 DOI: 10.1016/J.Immuni.2017.02.010  0.321
2017 Niu M, Cho JH, Kodali K, Pagala VR, High AA, Wang H, Wu Z, Li Y, Bi W, Zhang H, Wang X, Zou W, Peng J. Extensive Peptide Fractionation and y1 Ion-based Interference Detection Enable Accurate Quantification by Isobaric Labeling and Mass Spectrometry. Analytical Chemistry. PMID 28194965 DOI: 10.1021/Acs.Analchem.6B04415  0.327
2017 Bai B, Tan H, Pagala VR, High AA, Ichhaporia VP, Hendershot L, Peng J. Deep Profiling of Proteome and Phosphoproteome by Isobaric Labeling, Extensive Liquid Chromatography, and Mass Spectrometry. Methods in Enzymology. 585: 377-395. PMID 28109439 DOI: 10.1016/Bs.Mie.2016.10.007  0.369
2016 Lee KH, Zhang P, Kim HJ, Mitrea DM, Sarkar M, Freibaum BD, Cika J, Coughlin M, Messing J, Molliex A, Maxwell BA, Kim NC, Temirov J, Moore J, Kolaitis RM, ... ... Peng J, et al. C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell. 167: 774-788.e17. PMID 27768896 DOI: 10.1016/J.Cell.2016.10.002  0.368
2016 Li Y, Wang X, Cho JH, Shaw TI, Wu Z, Bai B, Wang H, Zhou S, Beach TG, Wu G, Zhang J, Peng J. JUMPg: an Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells. Journal of Proteome Research. PMID 27225868 DOI: 10.1021/Acs.Jproteome.6B00344  0.39
2016 Joo JH, Wang B, Frankel E, Ge L, Xu L, Iyengar R, Li-Harms X, Wright C, Shaw TI, Lindsten T, Green DR, Peng J, Hendershot LM, Kilic F, Sze JY, et al. The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis. Molecular Cell. 62: 491-506. PMID 27203176 DOI: 10.1016/J.Molcel.2016.04.020  0.372
2016 Gao Y, Li Y, Zhang C, Zhao M, Deng C, Lan Q, Liu Z, Su N, Wang J, Xu F, Xu Y, Ping L, Chang L, Gao H, Wu J, ... ... Peng J, et al. Enhanced Purification of Ubiquitinated Proteins by Engineered Tandem Hybrid Ubiquitin-binding Domains (ThUBDs). Molecular & Cellular Proteomics : McP. 15: 1381-96. PMID 27037361 DOI: 10.1074/Mcp.O115.051839  0.435
2016 Gao Y, Li Y, Zhang C, Zhao M, Deng C, Lan Q, Liu Z, Su N, Wang J, Xu F, Xu Y, Ping L, Chang L, Gao H, Wu J, ... ... Peng J, et al. Enhanced Purification of Ubiquitinated Proteins by Engineered Tandem Hybrid Ubiquitin-binding Domains (ThUBDs). Molecular & Cellular Proteomics : McP. PMID 26842620 DOI: 10.1074/mcp.O115.051839  0.326
2016 Gillies J, Hickey CM, Su D, Wu Z, Peng J, Hochstrasser M. SUMO Pathway Modulation of Regulatory Protein Binding at the Ribosomal DNA Locus in Saccharomyces cerevisiae. Genetics. PMID 26837752 DOI: 10.1534/Genetics.116.187252  0.434
2016 Wang X, Pandey AK, Mulligan MK, Williams EG, Mozhui K, Li Z, Jovaisaite V, Quarles LD, Xiao Z, Huang J, Capra JA, Chen Z, Taylor WL, Bastarache L, Niu X, ... ... Peng J, et al. Joint mouse-human phenome-wide association to test gene function and disease risk. Nature Communications. 7: 10464. PMID 26833085 DOI: 10.1038/Ncomms10464  0.3
2015 Pierce WK, Grace CR, Lee J, Nourse A, Marzahn MR, Watson ER, High AA, Peng J, Schulman BA, Mittag T. Multiple weak linear motifs enhance recruitment and processivity in SPOP-mediated substrate ubiquitination. Journal of Molecular Biology. PMID 26475525 DOI: 10.1016/J.Jmb.2015.10.002  0.342
2015 Beckley JR, Chen JS, Yang Y, Peng J, Gould KL. A degenerate cohort of yeast membrane trafficking DUBs mediates cell polarity and survival. Molecular & Cellular Proteomics : McP. PMID 26412298 DOI: 10.1074/Mcp.M115.050039  0.366
2015 Joshi A, Iyengar R, Joo JH, Li-Harms XJ, Wright C, Marino R, Winborn BJ, Phillips A, Temirov J, Sciarretta S, Kriwacki R, Peng J, Shelat A, Kundu M. Nuclear ULK1 promotes cell death in response to oxidative stress through PARP1. Cell Death and Differentiation. PMID 26138443 DOI: 10.1038/Cdd.2015.88  0.339
2015 Martinez J, Malireddi RK, Lu Q, Cunha LD, Pelletier S, Gingras S, Orchard R, Guan JL, Tan H, Peng J, Kanneganti TD, Virgin HW, Green DR. Molecular characterization of LC3-associated phagocytosis reveals distinct roles for Rubicon, NOX2 and autophagy proteins. Nature Cell Biology. 17: 893-906. PMID 26098576 DOI: 10.1038/Ncb3192  0.352
2015 Mertz J, Tan H, Pagala V, Bai B, Chen PC, Li Y, Cho JH, Shaw T, Wang X, Peng J. Sequential Elution Interactome Analysis of the Mind Bomb 1 Ubiquitin Ligase Reveals a Novel Role in Dendritic Spine Outgrowth. Molecular & Cellular Proteomics : McP. 14: 1898-910. PMID 25931508 DOI: 10.1074/Mcp.M114.045898  0.419
2015 Pagala VR, High AA, Wang X, Tan H, Kodali K, Mishra A, Kavdia K, Xu Y, Wu Z, Peng J. Quantitative protein analysis by mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1278: 281-305. PMID 25859956 DOI: 10.1007/978-1-4939-2425-7_17  0.399
2015 Liu K, Lyu L, Chin D, Gao J, Sun X, Shang F, Caceres A, Chang ML, Rowan S, Peng J, Mathias R, Kasahara H, Jiang S, Taylor A. Altered ubiquitin causes perturbed calcium homeostasis, hyperactivation of calpain, dysregulated differentiation, and cataract. Proceedings of the National Academy of Sciences of the United States of America. 112: 1071-6. PMID 25583491 DOI: 10.1073/Pnas.1404059112  0.384
2015 Wang H, Yang Y, Li Y, Bai B, Wang X, Tan H, Liu T, Beach TG, Peng J, Wu Z. Systematic optimization of long gradient chromatography mass spectrometry for deep analysis of brain proteome. Journal of Proteome Research. 14: 829-38. PMID 25455107 DOI: 10.1021/Pr500882H  0.35
2015 Tan H, Wu Z, Wang H, Bai B, Li Y, Wang X, Zhai B, Beach TG, Peng J. Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome. Proteomics. 15: 500-7. PMID 25307156 DOI: 10.1002/Pmic.201400171  0.393
2014 Wu Z, Na CH, Tan H, Peng J. Global ubiquitination analysis by SILAC in mammalian cells. Methods in Molecular Biology (Clifton, N.J.). 1188: 149-60. PMID 25059610 DOI: 10.1007/978-1-4939-1142-4_11  0.376
2014 Bai B, Chen PC, Hales CM, Wu Z, Pagala V, High AA, Levey AI, Lah JJ, Peng J. Integrated approaches for analyzing U1-70K cleavage in Alzheimer's disease. Journal of Proteome Research. 13: 4526-34. PMID 24902715 DOI: 10.1021/Pr5003593  0.332
2014 Jacobson AD, MacFadden A, Wu Z, Peng J, Liu CW. Autoregulation of the 26S proteasome by in situ ubiquitination. Molecular Biology of the Cell. 25: 1824-35. PMID 24743594 DOI: 10.1091/Mbc.E13-10-0585  0.37
2014 Havel JJ, Li Z, Cheng D, Peng J, Fu H. Nuclear PRAS40 couples the Akt/mTORC1 signaling axis to the RPL11-HDM2-p53 nucleolar stress response pathway. Oncogene. 34: 1487-98. PMID 24704832 DOI: 10.1038/Onc.2014.91  0.375
2014 Jones DR, Wu Z, Chauhan D, Anderson KC, Peng J. A nano ultra-performance liquid chromatography-high resolution mass spectrometry approach for global metabolomic profiling and case study on drug-resistant multiple myeloma. Analytical Chemistry. 86: 3667-75. PMID 24611431 DOI: 10.1021/Ac500476A  0.308
2014 Long L, Thelen JP, Furgason M, Haj-Yahya M, Brik A, Cheng D, Peng J, Yao T. The U4/U6 recycling factor SART3 has histone chaperone activity and associates with USP15 to regulate H2B deubiquitination. The Journal of Biological Chemistry. 289: 8916-30. PMID 24526689 DOI: 10.1074/Jbc.M114.551754  0.336
2014 Elias A, High AA, Mishra A, Ong SS, Wu J, Peng J, Chen T. Identification and characterization of phosphorylation sites within the pregnane X receptor protein. Biochemical Pharmacology. 87: 360-70. PMID 24184507 DOI: 10.1016/J.Bcp.2013.10.015  0.355
2013 Sá-Moura B, Funakoshi M, Tomko RJ, Dohmen RJ, Wu Z, Peng J, Hochstrasser M. A conserved protein with AN1 zinc finger and ubiquitin-like domains modulates Cdc48 (p97) function in the ubiquitin-proteasome pathway. The Journal of Biological Chemistry. 288: 33682-96. PMID 24121501 DOI: 10.1074/Jbc.M113.521088  0.418
2013 Bai B, Hales CM, Chen PC, Gozal Y, Dammer EB, Fritz JJ, Wang X, Xia Q, Duong DM, Street C, Cantero G, Cheng D, Jones DR, Wu Z, Li Y, ... ... Peng J, et al. U1 small nuclear ribonucleoprotein complex and RNA splicing alterations in Alzheimer's disease. Proceedings of the National Academy of Sciences of the United States of America. 110: 16562-7. PMID 24023061 DOI: 10.1073/Pnas.1310249110  0.696
2013 Shu C, Sankaran B, Chaton CT, Herr AB, Mishra A, Peng J, Li P. Structural insights into the functions of TBK1 in innate antimicrobial immunity. Structure (London, England : 1993). 21: 1137-48. PMID 23746807 DOI: 10.1016/J.Str.2013.04.025  0.307
2013 Zhou J, Jones DR, Duong DM, Levey AI, Lah JJ, Peng J. Proteomic analysis of postsynaptic density in Alzheimer's disease. Clinica Chimica Acta; International Journal of Clinical Chemistry. 420: 62-8. PMID 23537733 DOI: 10.1016/J.Cca.2013.03.016  0.371
2013 Willmund F, del Alamo M, Pechmann S, Chen T, Albanèse V, Dammer EB, Peng J, Frydman J. The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis. Cell. 152: 196-209. PMID 23332755 DOI: 10.1016/J.Cell.2012.12.001  0.612
2012 Yang Y, Duguay D, Bédard N, Rachalski A, Baquiran G, Na CH, Fahrenkrug J, Storch KF, Peng J, Wing SS, Cermakian N. Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2. Biology Open. 1: 789-801. PMID 23213472 DOI: 10.1242/Bio.20121990  0.349
2012 Han KJ, Foster DG, Zhang NY, Kanisha K, Dzieciatkowska M, Sclafani RA, Hansen KC, Peng J, Liu CW. Ubiquitin-specific protease 9x deubiquitinates and stabilizes the spinal muscular atrophy protein-survival motor neuron. The Journal of Biological Chemistry. 287: 43741-52. PMID 23112048 DOI: 10.1074/Jbc.M112.372318  0.371
2012 Lu Y, Li J, Cheng D, Parameswaran B, Zhang S, Jiang Z, Yew PR, Peng J, Ye Q, Hu Y. The F-box protein FBXO44 mediates BRCA1 ubiquitination and degradation. The Journal of Biological Chemistry. 287: 41014-22. PMID 23086937 DOI: 10.1074/Jbc.M112.407106  0.396
2012 Xu P, Tan H, Duong DM, Yang Y, Kupsco J, Moberg KH, Li H, Jin P, Peng J. Stable isotope labeling with amino acids in Drosophila for quantifying proteins and modifications. Journal of Proteome Research. 11: 4403-12. PMID 22830426 DOI: 10.1021/Pr300613C  0.395
2012 Chen PC, Na CH, Peng J. Quantitative proteomics to decipher ubiquitin signaling. Amino Acids. 43: 1049-60. PMID 22821265 DOI: 10.1007/S00726-012-1286-Y  0.429
2012 Xie L, Pi X, Mishra A, Fong G, Peng J, Patterson C. PHD3-dependent hydroxylation of HCLK2 promotes the DNA damage response. The Journal of Clinical Investigation. 122: 2827-36. PMID 22797300 DOI: 10.1172/Jci62374  0.333
2012 Dammer EB, Fallini C, Gozal YM, Duong DM, Rossoll W, Xu P, Lah JJ, Levey AI, Peng J, Bassell GJ, Seyfried NT. Coaggregation of RNA-binding proteins in a model of TDP-43 proteinopathy with selective RGG motif methylation and a role for RRM1 ubiquitination. Plos One. 7: e38658. PMID 22761693 DOI: 10.1371/Journal.Pone.0038658  0.728
2012 Bustos D, Bakalarski CE, Yang Y, Peng J, Kirkpatrick DS. Characterizing ubiquitination sites by peptide-based immunoaffinity enrichment. Molecular & Cellular Proteomics : McP. 11: 1529-40. PMID 22729469 DOI: 10.1074/Mcp.R112.019117  0.365
2012 Herskowitz JH, Gozal YM, Duong DM, Dammer EB, Gearing M, Ye K, Lah JJ, Peng J, Levey AI, Seyfried NT. Asparaginyl endopeptidase cleaves TDP-43 in brain. Proteomics. 12: 2455-63. PMID 22718532 DOI: 10.1002/Pmic.201200006  0.706
2012 Na CH, Peng J. Analysis of ubiquitinated proteome by quantitative mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 893: 417-29. PMID 22665315 DOI: 10.1007/978-1-61779-885-6_26  0.421
2012 Seyfried NT, Gozal YM, Donovan LE, Herskowitz JH, Dammer EB, Xia Q, Ku L, Chang J, Duong DM, Rees HD, Cooper DS, Glass JD, Gearing M, Tansey MG, Lah JJ, ... ... Peng J, et al. Quantitative analysis of the detergent-insoluble brain proteome in frontotemporal lobar degeneration using SILAC internal standards. Journal of Proteome Research. 11: 2721-38. PMID 22416763 DOI: 10.1021/Pr2010814  0.731
2012 Mayor U, Peng J. Deciphering tissue-specific ubiquitylation by mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 832: 65-80. PMID 22350876 DOI: 10.1007/978-1-61779-474-2_3  0.364
2012 Felberbaum R, Wilson NR, Cheng D, Peng J, Hochstrasser M. Desumoylation of the endoplasmic reticulum membrane VAP family protein Scs2 by Ulp1 and SUMO regulation of the inositol synthesis pathway. Molecular and Cellular Biology. 32: 64-75. PMID 22025676 DOI: 10.1128/Mcb.05878-11  0.41
2011 Go YM, Duong DM, Peng J, Jones DP. Protein Cysteines Map to Functional Networks According to Steady-state Level of Oxidation. Journal of Proteomics & Bioinformatics. 4: 196-209. PMID 22605892 DOI: 10.4172/Jpb.1000190  0.369
2011 Gozal YM, Seyfried NT, Gearing M, Glass JD, Heilman CJ, Wuu J, Duong DM, Cheng D, Xia Q, Rees HD, Fritz JJ, Cooper DS, Peng J, Levey AI, Lah JJ. Aberrant septin 11 is associated with sporadic frontotemporal lobar degeneration. Molecular Neurodegeneration. 6: 82. PMID 22126117 DOI: 10.1186/1750-1326-6-82  0.627
2011 Scaglione KM, Zavodszky E, Todi SV, Patury S, Xu P, Rodríguez-Lebrón E, Fischer S, Konen J, Djarmati A, Peng J, Gestwicki JE, Paulson HL. Ube2w and ataxin-3 coordinately regulate the ubiquitin ligase CHIP. Molecular Cell. 43: 599-612. PMID 21855799 DOI: 10.1016/J.Molcel.2011.05.036  0.369
2011 Qurashi A, Li W, Zhou JY, Peng J, Jin P. Nuclear accumulation of stress response mRNAs contributes to the neurodegeneration caused by Fragile X premutation rCGG repeats. Plos Genetics. 7: e1002102. PMID 21655086 DOI: 10.1371/Journal.Pgen.1002102  0.348
2011 Gozal YM, Dammer EB, Duong DM, Cheng D, Gearing M, Rees HD, Peng J, Lah JJ, Levey AI. Proteomic analysis of hippocampal dentate granule cells in frontotemporal lobar degeneration: application of laser capture technology. Frontiers in Neurology. 2: 24. PMID 21577247 DOI: 10.3389/Fneur.2011.00024  0.66
2011 Dammer EB, Na CH, Xu P, Seyfried NT, Duong DM, Cheng D, Gearing M, Rees H, Lah JJ, Levey AI, Rush J, Peng J. Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of Alzheimer disease. The Journal of Biological Chemistry. 286: 10457-65. PMID 21278249 DOI: 10.1074/Jbc.M110.149633  0.695
2011 Herskowitz JH, Seyfried NT, Gearing M, Kahn RA, Peng J, Levey AI, Lah JJ. Rho kinase II phosphorylation of the lipoprotein receptor LR11/SORLA alters amyloid-beta production. The Journal of Biological Chemistry. 286: 6117-27. PMID 21147781 DOI: 10.1074/Jbc.M110.167239  0.602
2011 Sephton CF, Cenik C, Kucukural A, Dammer EB, Cenik B, Han Y, Dewey CM, Roth FP, Herz J, Peng J, Moore MJ, Yu G. Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes. The Journal of Biological Chemistry. 286: 1204-15. PMID 21051541 DOI: 10.1074/Jbc.M110.190884  0.605
2011 Franco M, Seyfried NT, Brand AH, Peng J, Mayor U. A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development. Molecular & Cellular Proteomics : McP. 10: M110.002188. PMID 20861518 DOI: 10.1074/Mcp.M110.002188  0.586
2010 Dammer E, Peng J. At the crossroads of ubiquitin signaling and mass spectrometry. Expert Review of Proteomics. 7: 643-5. PMID 20973637 DOI: 10.1586/Epr.10.90  0.613
2010 Herskowitz JH, Seyfried NT, Duong DM, Xia Q, Rees HD, Gearing M, Peng J, Lah JJ, Levey AI. Phosphoproteomic analysis reveals site-specific changes in GFAP and NDRG2 phosphorylation in frontotemporal lobar degeneration. Journal of Proteome Research. 9: 6368-79. PMID 20886841 DOI: 10.1021/Pr100666C  0.63
2010 Zhou JY, Afjehi-Sadat L, Asress S, Duong DM, Cudkowicz M, Glass JD, Peng J. Galectin-3 is a candidate biomarker for amyotrophic lateral sclerosis: discovery by a proteomics approach. Journal of Proteome Research. 9: 5133-41. PMID 20698585 DOI: 10.1021/Pr100409R  0.347
2010 Bingol B, Wang CF, Arnott D, Cheng D, Peng J, Sheng M. Autophosphorylated CaMKIIalpha acts as a scaffold to recruit proteasomes to dendritic spines. Cell. 140: 567-78. PMID 20178748 DOI: 10.1016/J.Cell.2010.01.024  0.359
2010 Liu C, van Dyk D, Xu P, Choe V, Pan H, Peng J, Andrews B, Rao H. Ubiquitin chain elongation enzyme Ufd2 regulates a subset of Doa10 substrates. The Journal of Biological Chemistry. 285: 10265-72. PMID 20159987 DOI: 10.1074/Jbc.M110.110551  0.38
2010 Seyfried NT, Gozal YM, Dammer EB, Xia Q, Duong DM, Cheng D, Lah JJ, Levey AI, Peng J. Multiplex SILAC analysis of a cellular TDP-43 proteinopathy model reveals protein inclusions associated with SUMOylation and diverse polyubiquitin chains. Molecular & Cellular Proteomics : McP. 9: 705-18. PMID 20047951 DOI: 10.1074/Mcp.M800390-Mcp200  0.732
2009 Jacobson AD, Zhang NY, Xu P, Han KJ, Noone S, Peng J, Liu CW. The lysine 48 and lysine 63 ubiquitin conjugates are processed differently by the 26 s proteasome. The Journal of Biological Chemistry. 284: 35485-94. PMID 19858201 DOI: 10.1074/Jbc.M109.052928  0.338
2009 Gozal YM, Duong DM, Gearing M, Cheng D, Hanfelt JJ, Funderburk C, Peng J, Lah JJ, Levey AI. Proteomics analysis reveals novel components in the detergent-insoluble subproteome in Alzheimer's disease. Journal of Proteome Research. 8: 5069-79. PMID 19746990 DOI: 10.1021/Pr900474T  0.435
2009 Xu P, Duong DM, Peng J. Systematical optimization of reverse-phase chromatography for shotgun proteomics. Journal of Proteome Research. 8: 3944-50. PMID 19566079 DOI: 10.1021/Pr900251D  0.328
2009 Xu P, Duong DM, Seyfried NT, Cheng D, Xie Y, Robert J, Rush J, Hochstrasser M, Finley D, Peng J. Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell. 137: 133-45. PMID 19345192 DOI: 10.1016/J.Cell.2009.01.041  0.537
2009 Edbauer D, Cheng D, Batterton MN, Wang CF, Duong DM, Yaffe MB, Peng J, Sheng M. Identification and characterization of neuronal mitogen-activated protein kinase substrates using a specific phosphomotif antibody. Molecular & Cellular Proteomics : McP. 8: 681-95. PMID 19054758 DOI: 10.1074/Mcp.M800233-Mcp200  0.363
2009 Liu Z, Oh SM, Okada M, Liu X, Cheng D, Peng J, Brat DJ, Sun SY, Zhou W, Gu W, Ye K. Human BRE1 is an E3 ubiquitin ligase for Ebp1 tumor suppressor. Molecular Biology of the Cell. 20: 757-68. PMID 19037095 DOI: 10.1091/Mbc.E08-09-0983  0.354
2009 Lu Y, Adegoke OA, Nepveu A, Nakayama KI, Bedard N, Cheng D, Peng J, Wing SS. USP19 deubiquitinating enzyme supports cell proliferation by stabilizing KPC1, a ubiquitin ligase for p27Kip1. Molecular and Cellular Biology. 29: 547-58. PMID 19015242 DOI: 10.1128/Mcb.00329-08  0.324
2008 Dodson SE, Andersen OM, Karmali V, Fritz JJ, Cheng D, Peng J, Levey AI, Willnow TE, Lah JJ. Loss of LR11/SORLA enhances early pathology in a mouse model of amyloidosis: evidence for a proximal role in Alzheimer's disease. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 12877-86. PMID 19036982 DOI: 10.1523/Jneurosci.4582-08.2008  0.341
2008 Qi HH, Ongusaha PP, Myllyharju J, Cheng D, Pakkanen O, Shi Y, Lee SW, Peng J, Shi Y. Prolyl 4-hydroxylation regulates Argonaute 2 stability. Nature. 455: 421-4. PMID 18690212 DOI: 10.1038/Nature07186  0.332
2008 Sheng G, Xu X, Lin YF, Wang CE, Rong J, Cheng D, Peng J, Jiang X, Li SH, Li XJ. Huntingtin-associated protein 1 interacts with Ahi1 to regulate cerebellar and brainstem development in mice. The Journal of Clinical Investigation. 118: 2785-95. PMID 18636121 DOI: 10.1172/Jci35339  0.349
2008 Winborn BJ, Travis SM, Todi SV, Scaglione KM, Xu P, Williams AJ, Cohen RE, Peng J, Paulson HL. The deubiquitinating enzyme ataxin-3, a polyglutamine disease protein, edits Lys63 linkages in mixed linkage ubiquitin chains. The Journal of Biological Chemistry. 283: 26436-43. PMID 18599482 DOI: 10.1074/Jbc.M803692200  0.331
2008 Varghese B, Barriere H, Carbone CJ, Banerjee A, Swaminathan G, Plotnikov A, Xu P, Peng J, Goffin V, Lukacs GL, Fuchs SY. Polyubiquitination of prolactin receptor stimulates its internalization, postinternalization sorting, and degradation via the lysosomal pathway. Molecular and Cellular Biology. 28: 5275-87. PMID 18573876 DOI: 10.1128/Mcb.00350-08  0.323
2008 Xia Q, Cheng D, Duong DM, Gearing M, Lah JJ, Levey AI, Peng J. Phosphoproteomic analysis of human brain by calcium phosphate precipitation and mass spectrometry. Journal of Proteome Research. 7: 2845-51. PMID 18510355 DOI: 10.1021/Pr8000496  0.388
2008 Xia Q, Liao L, Cheng D, Duong DM, Gearing M, Lah JJ, Levey AI, Peng J. Proteomic identification of novel proteins associated with Lewy bodies. Frontiers in Bioscience : a Journal and Virtual Library. 13: 3850-6. PMID 18508479 DOI: 10.2741/2973  0.408
2008 Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J. Systematic approach for validating the ubiquitinated proteome. Analytical Chemistry. 80: 4161-9. PMID 18433149 DOI: 10.1021/Ac702516A  0.604
2008 Peng J. Evaluation of proteomic strategies for analyzing ubiquitinated proteins. Bmb Reports. 41: 177-83. PMID 18377720  0.344
2008 Sprung R, Chen Y, Zhang K, Cheng D, Zhang T, Peng J, Zhao Y. Identification and validation of eukaryotic aspartate and glutamate methylation in proteins. Journal of Proteome Research. 7: 1001-6. PMID 18220335 DOI: 10.1021/Pr0705338  0.342
2007 Zhou JY, Hanfelt J, Peng J. Clinical proteomics in neurodegenerative diseases. Proteomics. Clinical Applications. 1: 1342-50. PMID 21136634 DOI: 10.1002/Prca.200700378  0.367
2007 Kumar KG, Barriere H, Carbone CJ, Liu J, Swaminathan G, Xu P, Li Y, Baker DP, Peng J, Lukacs GL, Fuchs SY. Site-specific ubiquitination exposes a linear motif to promote interferon-alpha receptor endocytosis. The Journal of Cell Biology. 179: 935-50. PMID 18056411 DOI: 10.1083/Jcb.200706034  0.33
2007 Choe EA, Liao L, Zhou JY, Cheng D, Duong DM, Jin P, Tsai LH, Peng J. Neuronal morphogenesis is regulated by the interplay between cyclin-dependent kinase 5 and the ubiquitin ligase mind bomb 1. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 9503-12. PMID 17728463 DOI: 10.1523/Jneurosci.1408-07.2007  0.403
2007 Bowzard JB, Cheng D, Peng J, Kahn RA. ELMOD2 is an Arl2 GTPase-activating protein that also acts on Arfs. The Journal of Biological Chemistry. 282: 17568-80. PMID 17452337 DOI: 10.1074/Jbc.M701347200  0.379
2007 Chen Y, Sprung R, Tang Y, Ball H, Sangras B, Kim SC, Falck JR, Peng J, Gu W, Zhao Y. Lysine propionylation and butyrylation are novel post-translational modifications in histones. Molecular & Cellular Proteomics : McP. 6: 812-9. PMID 17267393 DOI: 10.1074/Mcp.M700021-Mcp200  0.396
2006 Xu P, Peng J. Dissecting the ubiquitin pathway by mass spectrometry. Biochimica Et Biophysica Acta. 1764: 1940-7. PMID 17055348 DOI: 10.1016/j.bbapap.2006.09.004  0.337
2006 Gozal YM, Cheng D, Duong DM, Lah JJ, Levey AI, Peng J. Merger of laser capture microdissection and mass spectrometry: a window into the amyloid plaque proteome. Methods in Enzymology. 412: 77-93. PMID 17046653 DOI: 10.1016/S0076-6879(06)12006-6  0.416
2006 Ahn JY, Liu X, Liu Z, Pereira L, Cheng D, Peng J, Wade PA, Hamburger AW, Ye K. Nuclear Akt associates with PKC-phosphorylated Ebp1, preventing DNA fragmentation by inhibition of caspase-activated DNase. The Embo Journal. 25: 2083-95. PMID 16642037 DOI: 10.1038/Sj.Emboj.7601111  0.302
2006 Wang M, Cheng D, Peng J, Pickart CM. Molecular determinants of polyubiquitin linkage selection by an HECT ubiquitin ligase Embo Journal. 25: 1710-1719. PMID 16601690 DOI: 10.1038/Sj.Emboj.7601061  0.318
2006 Cheng D, Hoogenraad CC, Rush J, Ramm E, Schlager MA, Duong DM, Xu P, Wijayawardana SR, Hanfelt J, Nakagawa T, Sheng M, Peng J. Relative and absolute quantification of postsynaptic density proteome isolated from rat forebrain and cerebellum. Molecular & Cellular Proteomics : McP. 5: 1158-70. PMID 16507876 DOI: 10.1074/Mcp.D500009-Mcp200  0.423
2006 Yin L, Russell NS, Cheng D, Peng J, Wilkinson KD. Specificity of Ubiquitin-Binding Proteins: Recognition of Different Faces of Ubiquitin Israel Journal of Chemistry. 46: 159-169. DOI: 10.1560/46F8-Edwb-6Qxp-Cb14  0.403
2005 Peng J, Cheng D. Proteomic analysis of ubiquitin conjugates in yeast. Methods in Enzymology. 399: 367-81. PMID 16338369 DOI: 10.1016/S0076-6879(05)99025-3  0.426
2005 Li Q, Price JP, Byers SA, Cheng D, Peng J, Price DH. Analysis of the large inactive P-TEFb complex indicates that it contains one 7SK molecule, a dimer of HEXIM1 or HEXIM2, and two P-TEFb molecules containing Cdk9 phosphorylated at threonine 186. The Journal of Biological Chemistry. 280: 28819-26. PMID 15965233 DOI: 10.1074/Jbc.M502712200  0.355
2004 Liao L, Cheng D, Wang J, Duong DM, Losik TG, Gearing M, Rees HD, Lah JJ, Levey AI, Peng J. Proteomic characterization of postmortem amyloid plaques isolated by laser capture microdissection. The Journal of Biological Chemistry. 279: 37061-8. PMID 15220353 DOI: 10.1074/Jbc.M403672200  0.399
2004 Peng J, Kim MJ, Cheng D, Duong DM, Gygi SP, Sheng M. Semiquantitative proteomic analysis of rat forebrain postsynaptic density fractions by mass spectrometry. The Journal of Biological Chemistry. 279: 21003-11. PMID 15020595 DOI: 10.1074/Jbc.M400103200  0.39
2003 Peng J, Schwartz D, Elias JE, Thoreen CC, Cheng D, Marsischky G, Roelofs J, Finley D, Gygi SP. A proteomics approach to understanding protein ubiquitination. Nature Biotechnology. 21: 921-6. PMID 12872131 DOI: 10.1038/Nbt849  0.429
2003 Gong X, Tang X, Wiedmann M, Wang X, Peng J, Zheng D, Blair LA, Marshall J, Mao Z. Cdk5-mediated inhibition of the protective effects of transcription factor MEF2 in neurotoxicity-induced apoptosis. Neuron. 38: 33-46. PMID 12691662 DOI: 10.1016/S0896-6273(03)00191-0  0.308
2003 Peng J, Elias JE, Thoreen CC, Licklider LJ, Gygi SP. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. Journal of Proteome Research. 2: 43-50. PMID 12643542 DOI: 10.1021/Pr025556V  0.359
2002 Licklider LJ, Thoreen CC, Peng J, Gygi SP. Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented column. Analytical Chemistry. 74: 3076-83. PMID 12141667 DOI: 10.1021/Ac025529O  0.302
2002 Peng J, Gygi SP. Proteomics: the move to mixtures. Journal of Mass Spectrometry : Jms. 36: 1083-91. PMID 11747101 DOI: 10.1002/Jms.229  0.392
2000 Niethammer M, Smith DS, Ayala R, Peng J, Ko J, Lee MS, Morabito M, Tsai LH. NUDEL is a novel Cdk5 substrate that associates with LIS1 and cytoplasmic dynein. Neuron. 28: 697-711. PMID 11163260 DOI: 10.1016/S0896-6273(00)00147-1  0.341
2000 Zhou M, Halanski MA, Radonovich MF, Kashanchi F, Peng J, Price DH, Brady JN. Tat modifies the activity of CDK9 to phosphorylate serine 5 of the RNA polymerase II carboxyl-terminal domain during human immunodeficiency virus type 1 transcription. Molecular and Cellular Biology. 20: 5077-86. PMID 10866664 DOI: 10.1128/Mcb.20.14.5077-5086.2000  0.308
2000 Fu TJ, Peng J, Lee G, Price DH, Flores O. Cyclin K functions as a CDK9 regulatory subunit and participates in RNA polymerase II transcription. The Journal of Biological Chemistry. 274: 34527-30. PMID 10574912 DOI: 10.1074/Jbc.274.49.34527  0.336
1999 Ye M, Duus KM, Peng J, Price DH, Grose C. Varicella-Zoster Virus Fc Receptor Component gI Is Phosphorylated on Its Endodomain by a Cyclin-Dependent Kinase Journal of Virology. 73: 1320-1330. DOI: 10.1128/Jvi.73.2.1320-1330.1999  0.349
1998 Fujinaga K, Cujec TP, Peng J, Garriga J, Price DH, Graña X, Peterlin BM. The ability of positive transcription elongation factor B to transactivate human immunodeficiency virus transcription depends on a functional kinase domain, cyclin T1, and Tat. Journal of Virology. 72: 7154-7159. PMID 9696809 DOI: 10.1128/Jvi.72.9.7154-7159.1998  0.339
1998 Peng J, Marshall NF, Price DH. Identification of a cyclin subunit required for the function of Drosophila P-TEFb. Journal of Biological Chemistry. 273: 13855-13860. PMID 9593731 DOI: 10.1074/Jbc.273.22.13855  0.315
1997 Mancebo HS, Lee G, Flygare J, Tomassini J, Luu P, Zhu Y, Peng J, Blau C, Hazuda D, Price D, Flores O. P-TEFb kinase is required for HIV Tat transcriptional activation in vivo and in vitro. Genes & Development. 11: 2633-44. PMID 9334326 DOI: 10.1101/Gad.11.20.2633  0.317
1997 Zhu Y, Pe'ery T, Peng J, Ramanathan Y, Marshall N, Marshall T, Amendt B, Mathews MB, Price DH. Transcription elongation factor P-TEFb is required for HIV-1 Tat transactivation in vitro Genes and Development. 11: 2622-2632. PMID 9334325 DOI: 10.1101/Gad.11.20.2622  0.345
Low-probability matches (unlikely to be authored by this person)
1998 Garriga J, Peng J, Parreño M, Price DH, Henderson EE, Graña X. Upregulation of cyclin T1/CDK9 complexes during T cell activation Oncogene. 17: 3093-3102. PMID 9872325 DOI: 10.1038/Sj.Onc.1202548  0.299
2018 Wen J, Hübner J, Orisme W, Wu G, Tang B, Jia S, Easton J, Haupfear K, Freibaum BD, Kim HJ, High A, Peng J, Tatevossian RG, Taylor JP, Pfister SM, et al. Abstract PR08: Overexpression and mutations of CXorf67 in “infant-type” posterior fossa type-A ependymomas Cancer Research. 78. DOI: 10.1158/1538-7445.Pedca17-Pr08  0.298
2012 Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Journal of Proteome Research. 11: 4722-32. PMID 22871113 DOI: 10.1021/Pr300536K  0.298
2015 Xie L, Pi X, Townley-Tilson WH, Li N, Wehrens XH, Entman ML, Taffet GE, Mishra A, Peng J, Schisler JC, Meissner G, Patterson C. PHD2/3-dependent hydroxylation tunes cardiac response to β-adrenergic stress via phospholamban. The Journal of Clinical Investigation. 125: 2759-71. PMID 26075818 DOI: 10.1172/Jci80369  0.298
2010 Fang R, Barbera AJ, Xu Y, Rutenberg M, Leonor T, Bi Q, Lan F, Mei P, Yuan GC, Lian C, Peng J, Cheng D, Sui G, Kaiser UB, Shi Y, et al. Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation. Molecular Cell. 39: 222-33. PMID 20670891 DOI: 10.1016/J.Molcel.2010.07.008  0.297
2008 Wooten MW, Geetha T, Babu JR, Seibenhener ML, Peng J, Cox N, Diaz-Meco MT, Moscat J. Essential role of sequestosome 1/p62 in regulating accumulation of Lys63-ubiquitinated proteins. The Journal of Biological Chemistry. 283: 6783-9. PMID 18174161 DOI: 10.1074/Jbc.M709496200  0.297
2001 Tarricone C, Dhavan R, Peng J, Areces LB, Tsai LH, Musacchio A. Structure and regulation of the CDK5-p25(nck5a) complex. Molecular Cell. 8: 657-69. PMID 11583627 DOI: 10.1016/S1097-2765(01)00343-4  0.295
2011 Kalinina J, Peng J, Ritchie JC, Van Meir EG. Proteomics of gliomas: initial biomarker discovery and evolution of technology. Neuro-Oncology. 13: 926-42. PMID 21852429 DOI: 10.1093/Neuonc/Nor078  0.295
2020 Wijaya J, Vo BT, Liu J, Xu B, Wu G, Wang Y, Peng J, Zhang J, Janke LJ, Orr BA, Yu J, Roussel MF, Schuetz JD. An ABC transporter drives medulloblastoma pathogenesis by regulating Sonic Hedgehog signaling. Cancer Research. PMID 31948942 DOI: 10.1158/0008-5472.Can-19-2054  0.295
2017 Yang J, Milasta S, Hu D, AlTahan A, Interiano R, Zhou J, Davidson J, Low J, Lin W, Bao J, Goh P, Nathwani A, Wang R, Wang Y, Ong SS, ... ... Peng J, et al. Targeting histone demethylases in MYC-driven neuroblastomas with ciclopirox. Cancer Research. PMID 28684529 DOI: 10.1158/0008-5472.Can-16-0826  0.294
2021 Bai B, Vanderwall D, Li Y, Wang X, Poudel S, Wang H, Dey KK, Chen PC, Yang K, Peng J. Proteomic landscape of Alzheimer's Disease: novel insights into pathogenesis and biomarker discovery. Molecular Neurodegeneration. 16: 55. PMID 34384464 DOI: 10.1186/s13024-021-00474-z  0.294
2020 Yang SW, Li L, Connelly JP, Porter SN, Kodali K, Gan H, Park JM, Tacer KF, Tillman H, Peng J, Pruett-Miller SM, Li W, Potts PR. A Cancer-Specific Ubiquitin Ligase Drives mRNA Alternative Polyadenylation by Ubiquitinating the mRNA 3' End Processing Complex. Molecular Cell. PMID 31980388 DOI: 10.1016/J.Molcel.2019.12.022  0.294
2014 Wang X, Li Y, Wu Z, Wang H, Tan H, Peng J. JUMP: a tag-based database search tool for peptide identification with high sensitivity and accuracy. Molecular & Cellular Proteomics : McP. 13: 3663-73. PMID 25202125 DOI: 10.1074/Mcp.O114.039586  0.293
2008 Subramanian K, Jia D, Kapoor-Vazirani P, Powell DR, Collins RE, Sharma D, Peng J, Cheng X, Vertino PM. Regulation of estrogen receptor alpha by the SET7 lysine methyltransferase. Molecular Cell. 30: 336-47. PMID 18471979 DOI: 10.1016/J.Molcel.2008.03.022  0.292
2019 Wang Z, Cai M, Tay LWR, Zhang F, Wu P, Huynh A, Cao X, Di Paolo G, Peng J, Milewicz DM, Du G. Phosphatidic acid generated by PLD2 promotes the plasma membrane recruitment of IQGAP1 and neointima formation. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. fj201800390RR. PMID 30811216 DOI: 10.1096/Fj.201800390Rr  0.291
2022 Sun X, Sun H, Han X, Chen PC, Jiao Y, Wu Z, Zhang X, Wang Z, Niu M, Yu K, Liu D, Dey KK, Mancieri A, Fu Y, Cho JH, ... ... Peng J, et al. Deep Single-Cell-Type Proteome Profiling of Mouse Brain by Nonsurgical AAV-Mediated Proximity Labeling. Analytical Chemistry. PMID 35315655 DOI: 10.1021/acs.analchem.1c05212  0.29
2009 Lu Y, Adegoke OAJ, Nepveu A, Nakayama KI, Bedard N, Cheng D, Peng J, Wing SS. USP19 deubiquitinating enzyme supports cell proliferation by stabilizing KPC1, a ubiquitin ligase for p27Kip1 (Molecular and Cellular Biology (2009) 29, 2, (547-558)) Molecular and Cellular Biology. 29. DOI: 10.1128/Mcb.00437-09  0.289
2020 Brewer CT, Kodali K, Wu J, Shaw TI, Peng J, Chen T. Toxicoproteomic Profiling of Transgenic Mice Treated with Rifampicin and Isoniazid. Cells. 9. PMID 32660103 DOI: 10.3390/Cells9071654  0.289
2018 Chang Y, Woessner DW, Lin W, Chen T, Xu B, Fan Y, Tan H, Peng J, Kasper L, Churchman ML, Gerhard DS, Loh ML, Hunger SP, Seth A, Gascoigne K, et al. Abstract IA12: Modeling and targeting CREBBP mutations in relapsed acute lymphoblastic leukemia Cancer Research. 78. DOI: 10.1158/1538-7445.Pedca17-Ia12  0.288
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2014 Xu Y, Gao XD, Lee JH, Huang H, Tan H, Ahn J, Reinke LM, Peter ME, Feng Y, Gius D, Siziopikou KP, Peng J, Xiao X, Cheng C. Cell type-restricted activity of hnRNPM promotes breast cancer metastasis via regulating alternative splicing. Genes & Development. 28: 1191-203. PMID 24840202 DOI: 10.1101/Gad.241968.114  0.286
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2010 Lai Y, Peng J, Cheng J, Moreno CS. Abstract 3912: Comprehensive Characterization of SOX4 Protein Complexes in Prostate Cancer Cells Cellular and Molecular Biology. 70: 3912-3912. DOI: 10.1158/1538-7445.Am10-3912  0.282
2008 Liu Z, Jang SW, Liu X, Cheng D, Peng J, Yepes M, Li XJ, Matthews S, Watts C, Asano M, Hara-Nishimura I, Luo HR, Ye K. Neuroprotective actions of PIKE-L by inhibition of SET proteolytic degradation by asparagine endopeptidase. Molecular Cell. 29: 665-78. PMID 18374643 DOI: 10.1016/J.Molcel.2008.02.017  0.282
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