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Orie T. Shafer, Ph.D. - Publications

Affiliations: 
Biology University of Michigan, Ann Arbor, Ann Arbor, MI 
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36/45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wani AR, Chowdhury B, Luong J, Chaya GM, Patel K, Isaacman-Beck J, Shafer O, Kayser MS, Syed MH. Stem cell-specific ecdysone signaling regulates the development and function of a sleep homeostat. Biorxiv : the Preprint Server For Biology. PMID 37873323 DOI: 10.1101/2023.09.29.560022  0.384
2022 Shafer OT, Gutierrez GJ, Li K, Mildenhall A, Spira D, Marty J, Lazar AA, Fernandez MP. ---Connectomic analysis of the lateral neuron clock cells reveals the synaptic basis of functional pacemaker classes. Elife. 11. PMID 35766361 DOI: 10.7554/eLife.79139  0.828
2020 Fernandez-Chiappe F, Hermann-Luibl C, Peteranderl A, Reinhard N, Senthilan PR, Hieke M, Selcho M, Yoshii T, Shafer OT, Muraro NI, Helfrich-Förster C. Dopamine signaling in wake promoting clock neurons is not required for the normal regulation of sleep in . The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 33172977 DOI: 10.1523/JNEUROSCI.1488-20.2020  0.337
2020 Fernandez MP, Pettibone HL, Bogart JT, Roell CJ, Davey CE, Pranevicius A, Huynh KV, Lennox SM, Kostadinov BS, Shafer OT. Sites of Circadian Clock Neuron Plasticity Mediate Sensory Integration and Entrainment. Current Biology : Cb. PMID 32386535 DOI: 10.1016/J.Cub.2020.04.025  0.633
2018 Fiorino A, Thompson D, Yadlapalli S, Jiang C, Shafer OT, Reddy P, Meyhofer E. Parallelized, real-time, metabolic-rate measurements from individual Drosophila. Scientific Reports. 8: 14452. PMID 30262912 DOI: 10.1038/S41598-018-32744-0  0.314
2018 Hsu IU, Linsley JW, Varineau JE, Shafer OT, Kuwada JY. Dstac is required for normal circadian activity rhythms in Drosophila. Chronobiology International. 1-11. PMID 29621409 DOI: 10.1080/07420528.2018.1454937  0.529
2018 Yadlapalli S, Jiang C, Bahle A, Reddy P, Meyhofer E, Shafer OT. Circadian clock neurons constantly monitor environmental temperature to set sleep timing. Nature. PMID 29466329 DOI: 10.1038/Nature25740  0.81
2017 Kaneko T, Macara AM, Li R, Hu Y, Iwasaki K, Dunnings Z, Firestone E, Horvatic S, Guntur A, Shafer OT, Yang CH, Zhou J, Ye B. Serotonergic Modulation Enables Pathway-Specific Plasticity in a Developing Sensory Circuit in Drosophila. Neuron. 95: 722. PMID 28772126 DOI: 10.1016/J.Neuron.2017.07.023  0.31
2017 Kaneko T, Macara AM, Li R, Hu Y, Iwasaki K, Dunnings Z, Firestone E, Horvatic S, Guntur A, Shafer OT, Yang CH, Zhou J, Ye B. Serotonergic Modulation Enables Pathway-Specific Plasticity in a Developing Sensory Circuit in Drosophila. Neuron. PMID 28712652 DOI: 10.1016/J.Neuron.2017.06.034  0.415
2017 Yadlapalli S, Shafer OT. How a brain keeps its cool. Elife. 6. PMID 28556778 DOI: 10.7554/Elife.28109  0.483
2017 Abruzzi KC, Zadina A, Luo W, Wiyanto E, Rahman R, Guo F, Shafer O, Rosbash M. RNA-seq analysis of Drosophila clock and non-clock neurons reveals neuron-specific cycling and novel candidate neuropeptides. Plos Genetics. 13: e1006613. PMID 28182648 DOI: 10.1371/Journal.Pgen.1006613  0.618
2017 Jiang C, Yadlapalli S, Bahle A, Reddy P, Meyhofer E, Shafer O. Temperature Sensation and Integration in the Drosophila Circadian Clock Biophysical Journal. 112: 135a. DOI: 10.1016/J.Bpj.2016.11.749  0.808
2016 Yao Z, Bennett AJ, Clem JL, Shafer OT. The Drosophila Clock Neuron Network Features Diverse Coupling Modes and Requires Network-wide Coherence for Robust Circadian Rhythms. Cell Reports. 17: 2873-2881. PMID 27974202 DOI: 10.1016/J.Celrep.2016.11.053  0.855
2016 Schlichting M, Menegazzi P, Lelito KR, Yao Z, Buhl E, Dalla Benetta E, Bahle A, Denike J, Hodge JJ, Helfrich-Förster C, Shafer OT. A Neural Network Underlying Circadian Entrainment and Photoperiodic Adjustment of Sleep and Activity in Drosophila. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 9084-96. PMID 27581451 DOI: 10.1523/Jneurosci.0992-16.2016  0.773
2014 Shafer OT, Yao Z. Pigment-Dispersing Factor Signaling and Circadian Rhythms in Insect Locomotor Activity. Current Opinion in Insect Science. 1: 73-80. PMID 25386391 DOI: 10.1016/J.Cois.2014.05.002  0.836
2014 Oh Y, Yoon SE, Zhang Q, Chae HS, Daubnerová I, Shafer OT, Choe J, Kim YJ. A homeostatic sleep-stabilizing pathway in Drosophila composed of the sex peptide receptor and its ligand, the myoinhibitory peptide. Plos Biology. 12: e1001974. PMID 25333796 DOI: 10.1371/Journal.Pbio.1001974  0.365
2014 Collins B, Kaplan HS, Cavey M, Lelito KR, Bahle AH, Zhu Z, Macara AM, Roman G, Shafer OT, Blau J. Differentially timed extracellular signals synchronize pacemaker neuron clocks. Plos Biology. 12: e1001959. PMID 25268747 DOI: 10.1371/Journal.Pbio.1001959  0.774
2014 Yao Z, Shafer OT. The Drosophila circadian clock is a variably coupled network of multiple peptidergic units. Science (New York, N.Y.). 343: 1516-20. PMID 24675961 DOI: 10.1126/Science.1251285  0.848
2012 Talsma AD, Christov CP, Terriente-Felix A, Linneweber GA, Perea D, Wayland M, Shafer OT, Miguel-Aliaga I. Remote control of renal physiology by the intestinal neuropeptide pigment-dispersing factor in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 109: 12177-82. PMID 22778427 DOI: 10.1073/Pnas.1200247109  0.444
2012 Yao Z, Macara AM, Lelito KR, Minosyan TY, Shafer OT. Analysis of functional neuronal connectivity in the Drosophila brain. Journal of Neurophysiology. 108: 684-96. PMID 22539819 DOI: 10.1152/Jn.00110.2012  0.774
2012 Lelito KR, Shafer OT. Reciprocal cholinergic and GABAergic modulation of the small ventrolateral pacemaker neurons of Drosophila's circadian clock neuron network. Journal of Neurophysiology. 107: 2096-108. PMID 22279191 DOI: 10.1152/Jn.00931.2011  0.83
2012 Lelito KR, Shafer OT. Imaging cAMP dynamics in the drosophila brain with the genetically encoded sensor epac1-camps Neuromethods. 72: 149-168. DOI: 10.1007/978-1-62703-014-4-9  0.744
2011 Beckwith EJ, Lelito KR, Hsu YW, Medina BM, Shafer O, Ceriani MF, de la Iglesia HO. Functional conservation of clock output signaling between flies and intertidal crabs. Journal of Biological Rhythms. 26: 518-29. PMID 22215610 DOI: 10.1177/0748730411420242  0.808
2009 Shafer OT, Taghert PH. RNA-interference knockdown of Drosophila pigment dispersing factor in neuronal subsets: the anatomical basis of a neuropeptide's circadian functions. Plos One. 4: e8298. PMID 20011537 DOI: 10.1371/Journal.Pone.0008298  0.773
2008 Shafer OT, Kim DJ, Dunbar-Yaffe R, Nikolaev VO, Lohse MJ, Taghert PH. Widespread receptivity to neuropeptide PDF throughout the neuronal circadian clock network of Drosophila revealed by real-time cyclic AMP imaging. Neuron. 58: 223-37. PMID 18439407 DOI: 10.1016/J.Neuron.2008.02.018  0.797
2008 Park D, Shafer OT, Shepherd SP, Suh H, Trigg JS, Taghert PH. The Drosophila basic helix-loop-helix protein DIMMED directly activates PHM, a gene encoding a neuropeptide-amidating enzyme. Molecular and Cellular Biology. 28: 410-21. PMID 17967878 DOI: 10.1128/Mcb.01104-07  0.606
2007 Helfrich-Förster C, Shafer OT, Wülbeck C, Grieshaber E, Rieger D, Taghert P. Development and morphology of the clock-gene-expressing lateral neurons of Drosophila melanogaster. The Journal of Comparative Neurology. 500: 47-70. PMID 17099895 DOI: 10.1002/Cne.21146  0.726
2006 Taghert PH, Shafer OT. Mechanisms of clock output in the Drosophila circadian pacemaker system. Journal of Biological Rhythms. 21: 445-57. PMID 17107935 DOI: 10.1177/0748730406293910  0.771
2006 Shafer OT, Helfrich-Förster C, Renn SC, Taghert PH. Reevaluation of Drosophila melanogaster's neuronal circadian pacemakers reveals new neuronal classes. The Journal of Comparative Neurology. 498: 180-93. PMID 16856134 DOI: 10.1002/Cne.21021  0.847
2006 Rieger D, Shafer OT, Tomioka K, Helfrich-Förster C. Functional analysis of circadian pacemaker neurons in Drosophila melanogaster. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 26: 2531-43. PMID 16510731 DOI: 10.1523/Jneurosci.1234-05.2006  0.539
2005 Mertens I, Vandingenen A, Johnson EC, Shafer OT, Li W, Trigg JS, De Loof A, Schoofs L, Taghert PH. PDF receptor signaling in Drosophila contributes to both circadian and geotactic behaviors. Neuron. 48: 213-9. PMID 16242402 DOI: 10.1016/J.Neuron.2005.09.009  0.763
2005 Johnson EC, Shafer OT, Trigg JS, Park J, Schooley DA, Dow JA, Taghert PH. A novel diuretic hormone receptor in Drosophila: evidence for conservation of CGRP signaling. The Journal of Experimental Biology. 208: 1239-46. PMID 15781884 DOI: 10.1242/Jeb.01529  0.694
2005 Wülbeck C, Szabo G, Shafer OT, Helfrich-Förster C, Stanewsky R. The novel Drosophila tim(blind) mutation affects behavioral rhythms but not periodic eclosion. Genetics. 169: 751-66. PMID 15520259 DOI: 10.1534/Genetics.104.036244  0.472
2004 Shafer OT, Levine JD, Truman JW, Hall JC. Flies by night: Effects of changing day length on Drosophila's circadian clock. Current Biology : Cb. 14: 424-32. PMID 15028219 DOI: 10.1016/J.Cub.2004.02.038  0.627
2002 Shafer OT, Rosbash M, Truman JW. Sequential nuclear accumulation of the clock proteins period and timeless in the pacemaker neurons of Drosophila melanogaster. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 22: 5946-54. PMID 12122057 DOI: 10.1523/Jneurosci.22-14-05946.2002  0.702
2001 Shafer OT. Blind clocks reveal elusive light input pathway in Drosophila. Trends in Neurosciences. 24: 627-8. PMID 11672787 DOI: 10.1016/S0166-2236(00)01934-2  0.425
Low-probability matches (unlikely to be authored by this person)
2023 Abhilash L, Shafer OT. Parametric effects of light acting via multiple photoreceptors contribute to circadian entrainment in . Proceedings. Biological Sciences. 290: 20230149. PMID 37700655 DOI: 10.1098/rspb.2023.0149  0.29
2022 Persons JL, Abhilash L, Lopatkin AJ, Roelofs A, Bell EV, Fernandez MP, Shafer OT. PHASE: An Open-Source Program for the Analysis of  ase, ctivity, and leep Under ntrainment. Journal of Biological Rhythms. 7487304221093114. PMID 35727044 DOI: 10.1177/07487304221093114  0.251
1998 Shafer OT, Chen A, Kumar SM, Muller KJ, Sahley CL. Injury-induced expression of endothelial nitric oxide synthase by glial and microglial cells in the leech central nervous system within minutes after injury. Proceedings. Biological Sciences / the Royal Society. 265: 2171-5. PMID 9872006 DOI: 10.1098/Rspb.1998.0555  0.243
2021 Shafer OT, Keene AC. The Regulation of Drosophila Sleep. Current Biology : Cb. 31: R38-R49. PMID 33434488 DOI: 10.1016/j.cub.2020.10.082  0.206
2023 Abhilash L, Shafer OT. A two-process model of Drosophila sleep reveals an inter-dependence between circadian clock speed and the rate of sleep pressure decay. Sleep. PMID 37930351 DOI: 10.1093/sleep/zsad277  0.192
2020 Chowdhury B, Shafer OT. Why the young sleep longer. Elife. 9. PMID 32338251 DOI: 10.7554/eLife.56833  0.18
2021 Kostadinov B, Lee Pettibone H, Bell EV, Zhou X, Pranevicius A, Shafer OT, Fernandez MP. Open-source computational framework for studying behavioral phase. Star Protocols. 2: 100285. PMID 33532734 DOI: 10.1016/j.xpro.2020.100285  0.146
2023 Chowdhury B, Abhilash L, Ortega A, Liu S, Shafer O. Homeostatic control of deep sleep and molecular correlates of sleep pressure in . Elife. 12. PMID 37906092 DOI: 10.7554/eLife.91355  0.139
2023 Emery P, Klarsfeld A, Stanewsky R, Shafer OT. Sensitive Timing: A Reappraisal of Chronobiology's Foundational Texts. Journal of Biological Rhythms. 7487304231169080. PMID 37226809 DOI: 10.1177/07487304231169080  0.136
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